Wall clock time and date at job start Sat Apr 11 2020 04:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47227 * 2 1 4 4 C 1.46499 * 119.99877 * 270.00201 * 3 2 1 5 5 C 1.53002 * 109.47122 * 269.99654 * 4 3 2 6 6 C 1.34779 * 120.00095 * 89.99519 * 3 2 1 7 7 O 1.21284 * 119.99578 * 0.02562 * 6 3 2 8 8 C 1.50697 * 119.99948 * 180.02562 * 6 3 2 9 9 N 1.46492 * 109.47008 * 180.02562 * 8 6 3 10 10 C 1.34784 * 120.00217 * 180.02562 * 9 8 6 11 11 O 1.21552 * 119.99611 * 359.97438 * 10 9 8 12 12 C 1.47865 * 120.00304 * 179.97438 * 10 9 8 13 13 C 1.39665 * 120.09843 * 359.97438 * 12 10 9 14 14 C 1.38047 * 120.03832 * 180.02562 * 13 12 10 15 15 C 1.38176 * 120.23812 * 359.67600 * 14 13 12 16 16 C 1.39179 * 120.20540 * 0.60009 * 15 14 13 17 17 S 1.76194 * 120.02163 * 179.69520 * 16 15 14 18 18 C 1.76196 * 100.00182 * 265.25136 * 17 16 15 19 19 H 1.08000 * 120.00393 * 5.12593 * 18 17 16 20 20 C 1.38736 * 120.00006 * 185.12109 * 18 17 16 21 21 N 1.31616 * 119.99932 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99686 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46950 * 90.00202 * 22 20 18 24 24 H 1.48495 * 109.46650 * 209.99961 * 22 20 18 25 25 H 1.48498 * 109.47335 * 329.99842 * 22 20 18 26 26 C 1.38875 * 119.95687 * 359.42658 * 16 15 14 27 27 H 1.08999 * 109.46831 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47170 * 300.00174 * 1 2 3 29 29 H 1.08999 * 109.47327 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47170 * 239.99826 * 2 1 3 31 31 H 1.09007 * 109.47087 * 119.99632 * 2 1 3 32 32 H 1.09003 * 109.47170 * 29.99473 * 4 3 2 33 33 H 1.08995 * 109.47269 * 149.99690 * 4 3 2 34 34 H 1.09003 * 109.46794 * 60.00004 * 5 4 3 35 35 H 1.08993 * 109.47158 * 179.97438 * 5 4 3 36 36 H 1.08996 * 109.47014 * 300.00361 * 5 4 3 37 37 H 1.09005 * 109.46791 * 60.00292 * 8 6 3 38 38 H 1.09002 * 109.47038 * 300.00217 * 8 6 3 39 39 H 0.96996 * 120.00373 * 359.97438 * 9 8 6 40 40 H 1.08002 * 119.98607 * 0.02562 * 13 12 10 41 41 H 1.07993 * 119.87788 * 179.97438 * 14 13 12 42 42 H 1.08004 * 119.89897 * 180.29644 * 15 14 13 43 43 H 0.97004 * 119.99833 * 179.97438 * 21 20 18 44 44 H 1.08000 * 120.12505 * 180.25503 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8314 -1.7104 6 6 2.2429 2.0166 1.1672 7 8 2.0411 1.4447 2.2175 8 6 2.7447 3.4376 1.1672 9 7 2.9081 3.8978 2.5483 10 6 3.3490 5.1474 2.7946 11 8 3.6115 5.8924 1.8707 12 6 3.5134 5.6121 4.1887 13 6 3.2118 4.7580 5.2519 14 6 3.3652 5.1933 6.5529 15 6 3.8233 6.4714 6.8096 16 6 4.1213 7.3328 5.7578 17 16 4.6975 8.9643 6.0907 18 6 3.1749 9.8478 6.0157 19 1 2.2456 9.3125 5.8889 20 6 3.1698 11.2313 6.1198 21 7 4.3023 11.8837 6.2751 22 14 1.5554 12.1678 6.0410 23 1 0.9989 12.3110 7.4103 24 1 1.7919 13.5136 5.4596 25 1 0.5923 11.4235 5.1905 26 6 3.9696 6.9038 4.4457 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 1.5817 1.6876 -2.0284 33 1 2.0955 3.1410 -1.1384 34 1 3.8745 0.7622 -1.8407 35 1 3.8890 2.3448 -2.6546 36 1 4.3883 2.2155 -0.9508 37 1 2.0264 4.0765 0.6535 38 1 3.7048 3.4838 0.6532 39 1 2.6983 3.3035 3.2856 40 1 2.8585 3.7564 5.0561 41 1 3.1309 4.5309 7.3730 42 1 3.9459 6.8047 7.8296 43 1 4.2988 12.8510 6.3475 44 1 4.2040 7.5686 3.6275 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079536708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:36:05 Heat of formation + Delta-G solvation = -73.033238 kcal Electronic energy + Delta-G solvation = -25523.860994 eV Core-core repulsion = 21759.274510 eV Total energy + Delta-G solvation = -3764.586484 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.66152 -40.80521 -39.15850 -37.41645 -35.78977 -34.64933 -33.25250 -32.37841 -31.93213 -30.71380 -28.73419 -27.73639 -25.03309 -24.51683 -23.92998 -23.40654 -21.73058 -20.51231 -19.87714 -19.11421 -18.12986 -17.71983 -17.16001 -17.10164 -16.92938 -16.73105 -16.41427 -15.90251 -15.63762 -15.27943 -14.90619 -14.85858 -14.71899 -14.62452 -14.47333 -14.10821 -13.82048 -13.54247 -13.42418 -13.24849 -13.08709 -12.96320 -12.95061 -12.67424 -12.59045 -12.39808 -12.06042 -11.93726 -11.75467 -11.31345 -11.19696 -11.07403 -10.77410 -10.43427 -9.95335 -9.83014 -9.71639 -8.80128 -8.38845 -6.18740 -0.22330 0.23605 1.29628 1.35327 1.37754 1.45873 1.55022 1.65480 1.75693 2.18245 2.25118 2.77083 2.94154 3.24833 3.41954 3.60314 3.92141 3.97737 4.00273 4.13224 4.14247 4.20588 4.24170 4.35258 4.43644 4.45786 4.50425 4.57917 4.64717 4.72796 4.87421 4.90771 4.96511 5.01795 5.10693 5.19224 5.27466 5.30928 5.35463 5.38981 5.47907 5.51882 5.82940 6.16373 6.18056 6.31184 6.90253 7.00013 7.01568 8.68239 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.017786 B = 0.002228 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.934084 B =12565.749617 C =12972.281331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.108 3.892 3 N -0.602 5.602 4 C 0.093 3.907 5 C -0.172 4.172 6 C 0.513 3.487 7 O -0.568 6.568 8 C 0.099 3.901 9 N -0.706 5.706 10 C 0.569 3.431 11 O -0.571 6.571 12 C -0.158 4.158 13 C -0.066 4.066 14 C -0.121 4.121 15 C -0.060 4.060 16 C -0.129 4.129 17 S -0.090 6.090 18 C -0.536 4.536 19 H 0.067 0.933 20 C 0.020 3.980 21 N -0.906 5.906 22 Si 0.992 3.008 23 H -0.263 1.263 24 H -0.272 1.272 25 H -0.269 1.269 26 C -0.039 4.039 27 H 0.080 0.920 28 H 0.034 0.966 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.045 0.955 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.417 0.583 40 H 0.162 0.838 41 H 0.173 0.827 42 H 0.138 0.862 43 H 0.274 0.726 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.808 -26.839 -14.475 31.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.014 4.014 3 N -0.334 5.334 4 C -0.029 4.029 5 C -0.230 4.230 6 C 0.300 3.700 7 O -0.448 6.448 8 C -0.028 4.028 9 N -0.362 5.362 10 C 0.358 3.642 11 O -0.451 6.451 12 C -0.162 4.162 13 C -0.085 4.085 14 C -0.141 4.141 15 C -0.080 4.080 16 C -0.241 4.241 17 S 0.144 5.856 18 C -0.683 4.683 19 H 0.085 0.915 20 C -0.186 4.186 21 N -0.542 5.542 22 Si 0.814 3.186 23 H -0.188 1.188 24 H -0.196 1.196 25 H -0.193 1.193 26 C -0.061 4.061 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.124 0.876 31 H 0.086 0.914 32 H 0.126 0.874 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.064 0.936 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.257 0.743 40 H 0.179 0.821 41 H 0.191 0.809 42 H 0.155 0.845 43 H 0.083 0.917 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.563 -26.047 -14.387 30.271 hybrid contribution -1.735 0.402 -0.004 1.781 sum -7.298 -25.644 -14.391 30.298 Atomic orbital electron populations 1.22090 0.95272 1.03095 1.01691 1.21598 0.94791 0.81117 1.03894 1.48086 1.64481 1.14946 1.05923 1.21941 0.98188 0.98239 0.84510 1.22206 0.95582 1.02914 1.02265 1.20502 0.77229 0.88114 0.84121 1.90678 1.53765 1.68145 1.32172 1.21283 1.04145 0.92698 0.84670 1.45498 1.67503 1.13963 1.09235 1.18259 0.76113 0.81329 0.88538 1.90755 1.52050 1.55806 1.46527 1.19872 1.07635 0.95522 0.93217 1.21674 0.95727 0.99358 0.91707 1.21522 0.99421 0.95394 0.97715 1.22083 0.93460 0.93652 0.98853 1.22518 1.05229 1.00769 0.95535 1.83476 1.15391 0.94827 1.91884 1.23062 0.92640 0.94419 1.58210 0.91490 1.26006 1.01535 0.97336 0.93699 1.70105 1.27786 1.09131 1.47160 0.85044 0.77152 0.77310 0.79096 1.18765 1.19643 1.19343 1.21637 0.93931 0.94592 0.95972 0.90088 0.94632 0.91437 0.87553 0.91376 0.87371 0.89524 0.91735 0.89716 0.93614 0.87422 0.87344 0.74324 0.82052 0.80928 0.84463 0.91685 0.87305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 10.24 71.98 0.74 -0.82 16 2 C 0.11 1.08 6.13 86.38 0.53 1.61 16 3 N -0.60 -7.32 2.47 -821.80 -2.03 -9.35 16 4 C 0.09 0.63 5.93 86.38 0.51 1.14 16 5 C -0.17 -1.14 10.24 71.98 0.74 -0.41 16 6 C 0.51 9.47 7.74 87.66 0.68 10.15 16 7 O -0.57 -13.94 15.25 -3.04 -0.05 -13.99 16 8 C 0.10 1.90 4.71 85.63 0.40 2.30 16 9 N -0.71 -17.19 5.48 -469.69 -2.57 -19.76 16 10 C 0.57 18.56 7.77 86.79 0.67 19.24 16 11 O -0.57 -22.55 16.34 -3.88 -0.06 -22.61 16 12 C -0.16 -5.41 5.87 -20.11 -0.12 -5.53 16 13 C -0.07 -1.74 9.54 22.57 0.22 -1.53 16 14 C -0.12 -3.22 10.02 22.21 0.22 -3.00 16 15 C -0.06 -2.14 9.79 22.48 0.22 -1.92 16 16 C -0.13 -5.81 5.45 22.65 0.12 -5.69 16 17 S -0.09 -4.98 21.40 -56.49 -1.21 -6.19 16 18 C -0.54 -31.69 9.46 67.94 0.64 -31.05 16 19 H 0.07 3.93 7.79 -2.91 -0.02 3.90 16 20 C 0.02 1.13 5.49 84.84 0.47 1.59 16 21 N -0.91 -54.83 13.22 21.64 0.29 -54.54 16 22 Si 0.99 44.92 29.55 68.60 2.03 46.94 16 23 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 C -0.04 -1.70 9.34 22.70 0.21 -1.49 16 27 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.11 0.48 8.07 -2.39 -0.02 0.46 16 31 H 0.07 0.95 7.42 -2.38 -0.02 0.93 16 32 H 0.11 0.27 8.07 -2.39 -0.02 0.25 16 33 H 0.09 0.59 6.44 -2.39 -0.02 0.57 16 34 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.04 0.46 7.22 -2.39 -0.02 0.44 16 37 H 0.11 1.92 7.40 -2.38 -0.02 1.90 16 38 H 0.11 1.93 7.19 -2.39 -0.02 1.91 16 39 H 0.42 9.09 5.47 -92.71 -0.51 8.59 16 40 H 0.16 2.96 6.40 -2.91 -0.02 2.94 16 41 H 0.17 3.03 8.06 -2.91 -0.02 3.00 16 42 H 0.14 4.69 8.06 -2.91 -0.02 4.66 16 43 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 44 H 0.11 5.25 7.65 -2.91 -0.02 5.22 16 Total: -1.00 -79.30 387.02 3.16 -76.15 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.51 Total: 18.76 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: 6.26 Total: -15.41 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -4.32 Total: -83.65 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -0.11 Total: -36.60 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: -4.98 SS G_CDS: -1.21 Total: -6.19 kcal Total: -79.30 3.16 -76.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079536708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.113 kcal (2) G-P(sol) polarization free energy of solvation -79.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds