Wall clock time and date at job start Sat Apr 11 2020 04:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36210 * 116.99721 * 2 1 4 4 C 1.34083 * 122.49916 * 0.02562 * 3 2 1 5 5 S 1.70603 * 110.97243 * 180.02562 * 4 3 2 6 6 C 1.75812 * 91.62172 * 0.02562 * 5 4 3 7 7 C 1.46546 * 125.42642 * 180.02562 * 6 5 4 8 8 O 1.21715 * 119.99917 * 180.02562 * 7 6 5 9 9 N 1.34780 * 120.00236 * 0.02562 * 7 6 5 10 10 C 1.46496 * 119.99975 * 180.02562 * 9 7 6 11 11 H 1.08996 * 112.88664 * 23.65838 * 10 9 7 12 12 C 1.53952 * 113.65979 * 252.18769 * 10 9 7 13 13 C 1.53954 * 87.29718 * 270.26260 * 12 10 9 14 14 H 1.09002 * 113.74607 * 89.75069 * 13 12 10 15 15 N 1.46498 * 113.66167 * 220.79713 * 13 12 10 16 16 C 1.36943 * 119.99752 * 251.90877 * 15 13 12 17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 13 18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 13 19 19 N 1.31624 * 119.99698 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00072 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47159 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47290 * 120.00044 * 20 18 16 23 23 H 1.48503 * 109.47163 * 240.00049 * 20 18 16 24 24 C 1.52909 * 86.78194 * 335.27068 * 13 12 10 25 25 C 1.52916 * 121.13545 * 259.17990 * 24 13 12 26 26 C 1.53946 * 86.78012 * 209.37995 * 25 24 13 27 27 C 1.52903 * 121.13947 * 150.62172 * 24 13 12 28 28 C 1.36735 * 109.14788 * 0.26543 * 6 5 4 29 29 H 1.09006 * 109.46793 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47416 * 299.99811 * 1 2 3 31 31 H 1.08993 * 109.47117 * 60.00542 * 1 2 3 32 32 H 1.07993 * 124.51522 * 0.04467 * 4 3 2 33 33 H 0.97002 * 119.99472 * 0.02562 * 9 7 6 34 34 H 1.09000 * 113.57696 * 155.66400 * 12 10 9 35 35 H 1.08997 * 113.58404 * 24.86925 * 12 10 9 36 36 H 0.97001 * 120.00384 * 72.19233 * 15 13 12 37 37 H 0.96999 * 119.99739 * 180.02562 * 19 18 16 38 38 H 1.09003 * 113.66006 * 323.85283 * 25 24 13 39 39 H 1.09000 * 113.66434 * 94.90668 * 25 24 13 40 40 H 1.09000 * 113.58290 * 270.12662 * 26 25 24 41 41 H 1.09003 * 113.64862 * 139.35099 * 26 25 24 42 42 H 1.09002 * 113.66292 * 265.08700 * 27 24 13 43 43 H 1.09002 * 113.66630 * 36.13814 * 27 24 13 44 44 H 1.08002 * 123.37779 * 179.71090 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2137 0.0000 4 6 1.3668 2.3689 0.0005 5 16 2.4293 3.7036 -0.0004 6 6 3.8352 2.6480 -0.0022 7 6 5.2316 3.0928 -0.0032 8 8 6.1314 2.2732 -0.0049 9 7 5.5194 4.4095 -0.0021 10 6 6.9152 4.8542 -0.0036 11 1 7.5977 4.1069 -0.4084 12 6 7.3749 5.4512 1.3390 13 6 6.9018 6.8174 0.8102 14 1 5.8596 7.0398 1.0394 15 7 7.8062 7.9213 1.1414 16 6 7.4401 8.8479 2.0809 17 1 6.4866 8.7623 2.5809 18 6 8.2945 9.8971 2.3906 19 7 9.4563 10.0017 1.7809 20 14 7.7956 11.1607 3.6727 21 1 6.4526 10.8200 4.2070 22 1 8.7839 11.1582 4.7811 23 1 7.7538 12.5081 3.0498 24 6 7.1138 6.2506 -0.5941 25 6 8.3630 6.5955 -1.4057 26 6 7.4925 6.4096 -2.6617 27 6 6.2753 6.7353 -1.7773 28 6 3.4183 1.3457 -0.0081 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 0.2895 2.4445 0.0016 33 1 4.8022 5.0627 -0.0003 34 1 8.4521 5.3936 1.4957 35 1 6.8025 5.0927 2.1944 36 1 8.6625 7.9982 0.6923 37 1 10.0535 10.7346 1.9976 38 1 8.7098 7.6187 -1.2612 39 1 9.1615 5.8592 -1.3139 40 1 7.4924 5.3893 -3.0451 41 1 7.6794 7.1526 -3.4371 42 1 5.4059 6.1106 -1.9824 43 1 6.0352 7.7978 -1.7373 44 1 4.0960 0.5049 -0.0148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078695921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:37:37 Heat of formation + Delta-G solvation = 22.217377 kcal Electronic energy + Delta-G solvation = -26388.575261 eV Core-core repulsion = 22628.119154 eV Total energy + Delta-G solvation = -3760.456107 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.129 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.72729 -40.15291 -38.91329 -36.08517 -35.06944 -34.12097 -32.39604 -30.17156 -29.36398 -28.26704 -25.52903 -25.30948 -24.35349 -23.92662 -22.41952 -21.38713 -20.29432 -19.80998 -18.92157 -17.81856 -17.43562 -17.19705 -16.29751 -16.19259 -15.82467 -15.33935 -14.99679 -14.81245 -14.72459 -14.50069 -13.88007 -13.48699 -13.35471 -13.14240 -13.04273 -12.68999 -12.47979 -12.12393 -12.05378 -11.86308 -11.66624 -11.39444 -11.32447 -11.28791 -10.95619 -10.84287 -10.68130 -10.22263 -10.15767 -10.07377 -9.87395 -9.68749 -9.38274 -9.23847 -8.85057 -8.79459 -8.34658 -6.97465 -5.81040 -3.09341 0.18670 1.13622 1.56675 2.12336 2.78855 3.07768 3.22359 3.40683 3.46697 3.48739 4.50632 4.55950 4.61296 4.71010 4.75926 4.76285 4.92892 4.95958 5.03652 5.07636 5.20195 5.23606 5.36754 5.43189 5.62684 5.64065 5.74000 5.83173 5.91446 6.00881 6.04788 6.10787 6.18839 6.21570 6.35574 6.40836 6.46134 6.62103 6.77343 6.85230 6.92202 7.02824 7.46489 7.67501 8.10767 8.37798 9.49450 10.07116 10.41981 11.41318 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.016255 B = 0.002682 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.099663 B =10437.636853 C =11304.336231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.305 6.305 3 C 0.103 3.897 4 C -0.343 4.343 5 S 0.232 5.768 6 C -0.234 4.234 7 C 0.591 3.409 8 O -0.526 6.526 9 N -0.697 5.697 10 C 0.143 3.857 11 H 0.100 0.900 12 C -0.175 4.175 13 C 0.180 3.820 14 H 0.074 0.926 15 N -0.707 5.707 16 C -0.242 4.242 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.931 5.931 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.126 4.126 25 C -0.104 4.104 26 C -0.140 4.140 27 C -0.124 4.124 28 C -0.070 4.070 29 H 0.101 0.899 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.171 0.829 33 H 0.398 0.602 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.387 0.613 37 H 0.255 0.745 38 H 0.098 0.902 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.086 0.914 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.421 -15.879 -7.671 24.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.220 6.220 3 C 0.046 3.954 4 C -0.481 4.481 5 S 0.498 5.502 6 C -0.354 4.354 7 C 0.376 3.624 8 O -0.404 6.404 9 N -0.346 5.346 10 C 0.038 3.962 11 H 0.118 0.882 12 C -0.217 4.217 13 C 0.067 3.933 14 H 0.092 0.908 15 N -0.346 5.346 16 C -0.374 4.374 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.579 5.579 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.129 4.129 25 C -0.141 4.141 26 C -0.177 4.177 27 C -0.161 4.161 28 C -0.105 4.105 29 H 0.119 0.881 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.188 0.812 33 H 0.233 0.767 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.222 0.778 37 H 0.065 0.935 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.105 0.895 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -16.987 -14.914 -7.524 23.824 hybrid contribution -0.606 -0.443 0.661 1.000 sum -17.593 -15.357 -6.863 24.340 Atomic orbital electron populations 1.23050 0.78199 1.04032 1.01303 1.86124 1.21276 1.25127 1.89440 1.17551 0.91542 0.84768 1.01537 1.25072 1.05792 0.97509 1.19707 1.83027 0.92713 1.06201 1.68247 1.24497 0.97851 0.97510 1.15591 1.16796 0.86093 0.82764 0.76741 1.90843 1.46630 1.52952 1.49948 1.45462 1.09042 1.05956 1.74164 1.21579 0.81282 0.94720 0.98645 0.88202 1.24311 1.01953 1.00094 0.95321 1.21394 0.94493 0.86958 0.90417 0.90770 1.42372 1.19057 1.26705 1.46428 1.19330 1.01519 1.02775 1.13735 0.91120 1.24750 0.96667 0.99154 1.00262 1.69665 1.09778 1.33334 1.45137 0.86136 0.77567 0.81490 0.81094 1.20566 1.21876 1.21894 1.23459 0.98709 0.94824 0.95897 1.22462 0.94967 1.02831 0.93885 1.22823 0.97253 1.00901 0.96762 1.22643 0.96301 1.01390 0.95792 1.19948 0.92858 0.96955 1.00746 0.88092 0.92707 0.92730 0.81162 0.76706 0.89349 0.92168 0.77761 0.93501 0.88369 0.91782 0.90946 0.91854 0.92354 0.89524 0.81978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.93 101.05 1.00 1.17 16 2 O -0.31 -2.97 10.56 -20.41 -0.22 -3.18 16 3 C 0.10 1.06 6.61 -41.23 -0.27 0.79 16 4 C -0.34 -2.96 9.81 29.27 0.29 -2.67 16 5 S 0.23 2.08 22.15 -107.50 -2.38 -0.30 16 6 C -0.23 -2.78 6.45 -36.78 -0.24 -3.02 16 7 C 0.59 8.51 7.78 -12.91 -0.10 8.41 16 8 O -0.53 -9.30 16.44 5.18 0.09 -9.21 16 9 N -0.70 -9.37 4.80 -54.72 -0.26 -9.63 16 10 C 0.14 2.18 4.12 -67.48 -0.28 1.90 16 11 H 0.10 1.62 7.46 -51.93 -0.39 1.23 16 12 C -0.17 -3.06 7.68 -25.75 -0.20 -3.26 16 13 C 0.18 3.38 4.27 -67.48 -0.29 3.09 16 14 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 15 N -0.71 -16.86 5.30 -52.99 -0.28 -17.14 16 16 C -0.24 -6.49 9.97 -15.06 -0.15 -6.64 16 17 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -27.40 13.06 55.49 0.72 -26.67 16 20 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 24 C -0.13 -1.97 0.92 -154.71 -0.14 -2.11 16 25 C -0.10 -1.62 7.15 -26.28 -0.19 -1.81 16 26 C -0.14 -1.87 8.08 -25.76 -0.21 -2.08 16 27 C -0.12 -1.71 7.62 -26.29 -0.20 -1.91 16 28 C -0.07 -0.82 10.00 -40.31 -0.40 -1.22 16 29 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.25 7.84 -51.93 -0.41 -0.15 16 31 H 0.05 0.25 7.84 -51.93 -0.41 -0.16 16 32 H 0.17 1.05 6.96 -52.49 -0.37 0.69 16 33 H 0.40 4.65 7.53 -40.82 -0.31 4.34 16 34 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.39 9.77 6.23 -40.82 -0.25 9.51 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.10 1.76 7.03 -51.93 -0.36 1.40 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.71 7.58 -51.93 -0.39 0.32 16 43 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 44 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 376.85 15.07 5.68 5.68 Total: -1.00 -31.56 376.85 -9.38 -40.94 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -6.24 Total: 12.39 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -1.47 Total: -9.81 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.18 Total: -53.44 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -0.13 Total: -12.39 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -2.38 Total: -0.30 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.56 -9.38 -40.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078695921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.160 kcal (2) G-P(sol) polarization free energy of solvation -31.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds