Wall clock time and date at job start Sat Apr 11 2020 04:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36205 * 117.00240 * 2 1 4 4 C 1.34078 * 122.50002 * 359.97438 * 3 2 1 5 5 S 1.70603 * 110.97723 * 180.02562 * 4 3 2 6 6 C 1.75817 * 91.61998 * 359.97438 * 5 4 3 7 7 C 1.46540 * 125.42590 * 179.97438 * 6 5 4 8 8 O 1.21718 * 119.99713 * 180.02562 * 7 6 5 9 9 N 1.34775 * 120.00528 * 0.02877 * 7 6 5 10 10 C 1.46493 * 120.00529 * 179.72309 * 9 7 6 11 11 C 1.54326 * 111.69382 * 298.98680 * 10 9 7 12 12 C 1.55052 * 103.93630 * 262.78577 * 11 10 9 13 13 C 1.55047 * 102.11322 * 319.94550 * 12 11 10 14 14 C 1.54320 * 103.93764 * 40.05450 * 13 12 11 15 15 H 1.08997 * 111.02082 * 96.81222 * 14 13 12 16 16 C 1.53780 * 109.79330 * 221.69229 * 14 13 12 17 17 N 1.47213 * 106.37974 * 95.21705 * 16 14 13 18 18 C 1.36935 * 126.70383 * 211.28878 * 17 16 14 19 19 H 1.08001 * 120.00063 * 162.12676 * 18 17 16 20 20 C 1.38813 * 119.99979 * 342.12012 * 18 17 16 21 21 N 1.31621 * 120.00022 * 159.77286 * 20 18 17 22 22 Si 1.86800 * 119.99923 * 339.77249 * 20 18 17 23 23 H 1.48500 * 109.46998 * 84.68363 * 22 20 18 24 24 H 1.48497 * 109.47178 * 204.68032 * 22 20 18 25 25 H 1.48500 * 109.47265 * 324.68298 * 22 20 18 26 26 C 1.48673 * 107.09175 * 30.74182 * 17 16 14 27 27 C 1.36744 * 109.14333 * 0.23205 * 6 5 4 28 28 H 1.08994 * 109.47190 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47202 * 300.00511 * 1 2 3 30 30 H 1.08999 * 109.47315 * 59.99622 * 1 2 3 31 31 H 1.08003 * 124.51656 * 359.97438 * 4 3 2 32 32 H 0.97003 * 119.99593 * 359.97438 * 9 7 6 33 33 H 1.09006 * 110.53125 * 21.40041 * 11 10 9 34 34 H 1.08999 * 110.53786 * 144.17029 * 11 10 9 35 35 H 1.09006 * 110.89946 * 78.14855 * 12 11 10 36 36 H 1.09001 * 110.90283 * 201.74064 * 12 11 10 37 37 H 1.08996 * 110.54018 * 158.67536 * 13 12 11 38 38 H 1.09005 * 110.53501 * 281.44523 * 13 12 11 39 39 H 1.08995 * 110.07580 * 214.44756 * 16 14 13 40 40 H 1.09001 * 110.07488 * 335.93656 * 16 14 13 41 41 H 0.97002 * 120.00026 * 179.97438 * 21 20 18 42 42 H 1.09001 * 110.91006 * 210.52736 * 26 17 16 43 43 H 1.09004 * 109.94403 * 88.52532 * 26 17 16 44 44 H 1.07995 * 123.36562 * 179.76949 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2136 0.0000 4 6 1.3670 2.3689 -0.0005 5 16 2.4296 3.7035 -0.0011 6 6 3.8355 2.6478 0.0002 7 6 5.2317 3.0925 -0.0001 8 8 6.1315 2.2728 0.0003 9 7 5.5197 4.4092 -0.0009 10 6 6.9155 4.8538 0.0048 11 6 7.6641 4.3669 1.2635 12 6 7.6028 5.5800 2.2271 13 6 7.8371 6.7725 1.2643 14 6 7.0266 6.3986 0.0054 15 1 6.0461 6.8746 0.0161 16 6 7.8335 6.7480 -1.2562 17 7 8.5296 5.5148 -1.6585 18 6 9.7446 5.4277 -2.2840 19 1 10.2908 4.4960 -2.2757 20 6 10.2744 6.5369 -2.9290 21 7 11.5653 6.5991 -3.1783 22 14 9.1551 7.9414 -3.4430 23 1 8.9648 8.8673 -2.2977 24 1 9.7718 8.6763 -4.5765 25 1 7.8390 7.3970 -3.8635 26 6 7.6706 4.3737 -1.2458 27 6 3.4183 1.3455 -0.0043 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8899 31 1 0.2896 2.4445 -0.0013 32 1 4.8026 5.0624 -0.0017 33 1 7.1581 3.5057 1.7000 34 1 8.6985 4.1219 1.0224 35 1 6.6243 5.6502 2.7023 36 1 8.3936 5.5228 2.9751 37 1 7.4598 7.6969 1.7015 38 1 8.8960 6.8669 1.0232 39 1 7.1628 7.0752 -2.0506 40 1 8.5578 7.5312 -1.0321 41 1 11.9354 7.3740 -3.6293 42 1 8.2749 3.4990 -1.0052 43 1 6.9641 4.1337 -2.0404 44 1 4.0961 0.5047 -0.0081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098972740.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:36:16 Heat of formation + Delta-G solvation = -2.833158 kcal Electronic energy + Delta-G solvation = -27210.263869 eV Core-core repulsion = 23448.721489 eV Total energy + Delta-G solvation = -3761.542380 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.53694 -40.04385 -38.38526 -36.01564 -34.58609 -33.63272 -31.70285 -30.24762 -29.42321 -28.37994 -27.98238 -25.22036 -24.93199 -23.82500 -21.84975 -20.82642 -20.58034 -19.59142 -19.03509 -18.55409 -17.43188 -17.12384 -16.17928 -16.08423 -15.94548 -15.22223 -14.93161 -14.82420 -14.49777 -14.10551 -13.89399 -13.57888 -13.43479 -13.35013 -13.03197 -13.02345 -12.91173 -12.05541 -12.03658 -11.59590 -11.39777 -11.30349 -11.29928 -11.09562 -10.94713 -10.78646 -10.72768 -10.45846 -10.39825 -10.12082 -9.92029 -9.80650 -9.39451 -9.20461 -8.96022 -8.66185 -8.33372 -7.05166 -5.89909 -3.21086 0.22029 1.15135 1.57535 2.16144 2.82748 3.16685 3.26906 3.33457 3.49010 3.50898 4.50789 4.55942 4.60841 4.62440 4.76629 4.81963 4.89767 4.94546 5.03941 5.08646 5.11599 5.40673 5.44108 5.59121 5.64367 5.66704 5.69120 5.79113 5.82098 5.88423 5.94286 6.10443 6.16298 6.30017 6.43635 6.51824 6.57067 6.67276 6.71402 6.74220 6.87370 6.91631 7.51973 7.67814 8.20734 8.34520 8.85031 9.71013 10.20416 11.26317 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.019064 B = 0.003041 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.375392 B = 9206.521685 C = 9475.889024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.305 6.305 3 C 0.105 3.895 4 C -0.344 4.344 5 S 0.221 5.779 6 C -0.228 4.228 7 C 0.587 3.413 8 O -0.512 6.512 9 N -0.706 5.706 10 C 0.161 3.839 11 C -0.114 4.114 12 C -0.123 4.123 13 C -0.114 4.114 14 C -0.104 4.104 15 H 0.078 0.922 16 C 0.115 3.885 17 N -0.603 5.603 18 C -0.234 4.234 19 H 0.095 0.905 20 C 0.019 3.981 21 N -0.912 5.912 22 Si 0.883 3.117 23 H -0.286 1.286 24 H -0.303 1.303 25 H -0.275 1.275 26 C 0.139 3.861 27 C -0.071 4.071 28 H 0.101 0.899 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.170 0.830 32 H 0.394 0.606 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.024 0.976 40 H 0.069 0.931 41 H 0.263 0.737 42 H 0.066 0.934 43 H 0.025 0.975 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.137 -5.563 10.912 27.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.219 6.219 3 C 0.048 3.952 4 C -0.482 4.482 5 S 0.487 5.513 6 C -0.349 4.349 7 C 0.372 3.628 8 O -0.388 6.388 9 N -0.357 5.357 10 C 0.074 3.926 11 C -0.152 4.152 12 C -0.161 4.161 13 C -0.152 4.152 14 C -0.124 4.124 15 H 0.097 0.903 16 C -0.011 4.011 17 N -0.328 5.328 18 C -0.360 4.360 19 H 0.112 0.888 20 C -0.179 4.179 21 N -0.556 5.556 22 Si 0.713 3.287 23 H -0.213 1.213 24 H -0.231 1.231 25 H -0.201 1.201 26 C 0.013 3.987 27 C -0.105 4.105 28 H 0.119 0.881 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.188 0.812 32 H 0.228 0.772 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.042 0.958 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.042 0.958 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -23.373 -4.694 10.758 26.154 hybrid contribution -1.385 -0.270 -0.512 1.501 sum -24.757 -4.964 10.246 27.250 Atomic orbital electron populations 1.23044 0.78241 1.04032 1.01245 1.86130 1.21240 1.25131 1.89385 1.17562 0.91571 0.84756 1.01315 1.25018 1.05645 0.97431 1.20087 1.82878 0.93001 1.06644 1.68827 1.24564 0.97860 0.97383 1.15120 1.16794 0.86013 0.82911 0.77061 1.90876 1.46299 1.52814 1.48835 1.45911 1.08695 1.06028 1.75041 1.21785 0.79263 0.93917 0.97592 1.22707 1.01257 0.97416 0.93867 1.22583 1.00768 0.95328 0.97416 1.22492 1.01336 0.97322 0.94043 1.22793 0.99082 0.93124 0.97443 0.90339 1.21798 0.94871 0.91787 0.92646 1.45074 1.19987 0.99387 1.68396 1.18687 0.90661 0.99776 1.26925 0.88772 1.24952 0.95752 0.97588 0.99621 1.69817 1.10134 1.30492 1.45159 0.86993 0.81074 0.82737 0.77863 1.21303 1.23126 1.20088 1.21851 0.92905 0.91920 0.92065 1.19976 0.92851 0.97050 1.00668 0.88085 0.92778 0.92734 0.81249 0.77210 0.91265 0.89715 0.92199 0.91601 0.91984 0.90107 0.95804 0.91311 0.92761 0.91565 0.95757 0.81866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.93 101.05 1.00 1.17 16 2 O -0.30 -3.06 10.56 -20.39 -0.22 -3.28 16 3 C 0.11 1.12 6.61 -41.23 -0.27 0.84 16 4 C -0.34 -3.01 9.81 29.27 0.29 -2.72 16 5 S 0.22 1.97 22.15 -107.50 -2.38 -0.41 16 6 C -0.23 -2.81 6.45 -36.78 -0.24 -3.05 16 7 C 0.59 8.83 7.06 -12.92 -0.09 8.74 16 8 O -0.51 -9.41 14.76 5.17 0.08 -9.33 16 9 N -0.71 -9.94 5.19 -47.01 -0.24 -10.18 16 10 C 0.16 2.70 0.93 -129.73 -0.12 2.58 16 11 C -0.11 -1.85 5.50 -24.95 -0.14 -1.98 16 12 C -0.12 -1.67 6.92 -24.56 -0.17 -1.84 16 13 C -0.11 -1.71 6.25 -24.96 -0.16 -1.86 16 14 C -0.10 -1.70 3.63 -88.53 -0.32 -2.02 16 15 H 0.08 1.05 7.71 -51.93 -0.40 0.65 16 16 C 0.11 2.44 4.13 -3.25 -0.01 2.43 16 17 N -0.60 -14.68 3.24 -169.93 -0.55 -15.23 16 18 C -0.23 -6.68 10.66 -15.06 -0.16 -6.84 16 19 H 0.09 2.88 8.06 -52.49 -0.42 2.45 16 20 C 0.02 0.55 5.45 -17.43 -0.09 0.45 16 21 N -0.91 -28.28 13.97 55.49 0.78 -27.50 16 22 Si 0.88 22.58 24.36 -169.99 -4.14 18.44 16 23 H -0.29 -6.93 6.36 56.52 0.36 -6.57 16 24 H -0.30 -7.90 7.11 56.52 0.40 -7.49 16 25 H -0.28 -6.96 6.49 56.52 0.37 -6.60 16 26 C 0.14 2.95 5.35 -2.44 -0.01 2.94 16 27 C -0.07 -0.86 10.00 -40.31 -0.40 -1.26 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.25 7.84 -51.93 -0.41 -0.16 16 30 H 0.05 0.26 7.84 -51.93 -0.41 -0.14 16 31 H 0.17 1.05 6.96 -52.48 -0.37 0.69 16 32 H 0.39 4.44 7.40 -40.82 -0.30 4.14 16 33 H 0.07 1.12 6.65 -51.93 -0.35 0.78 16 34 H 0.08 1.55 7.57 -51.93 -0.39 1.16 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.41 7.61 -51.93 -0.40 1.01 16 39 H 0.02 0.53 6.16 -51.93 -0.32 0.21 16 40 H 0.07 1.56 5.26 -51.93 -0.27 1.29 16 41 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 42 H 0.07 1.49 7.52 -51.93 -0.39 1.10 16 43 H 0.02 0.54 8.05 -51.93 -0.42 0.12 16 44 H 0.16 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 356.44 15.07 5.37 5.37 Total: -1.00 -33.51 356.44 -8.38 -41.89 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.17 Total: 2.66 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -0.90 Total: -2.42 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -0.02 Total: -52.91 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.14 Total: -12.61 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.14 Total: 18.44 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.38 Total: -0.41 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.51 -8.38 -41.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098972740.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.057 kcal (2) G-P(sol) polarization free energy of solvation -33.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds