Wall clock time and date at job start Sat Apr 11 2020 04:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42094 * 109.47044 * 2 1 4 4 C 1.81401 * 103.00049 * 243.60907 * 2 1 3 5 5 C 1.50694 * 109.47127 * 180.02562 * 4 2 1 6 6 C 1.38140 * 120.03937 * 270.32569 * 5 4 2 7 7 C 1.38258 * 120.06805 * 180.30138 * 6 5 4 8 8 C 1.38300 * 120.14500 * 359.67321 * 7 6 5 9 9 C 1.38093 * 120.06653 * 0.02562 * 8 7 6 10 10 C 1.38848 * 120.03509 * 90.00096 * 5 4 2 11 11 N 1.39942 * 120.06966 * 0.02562 * 10 5 4 12 12 C 1.34777 * 120.00638 * 148.56214 * 11 10 5 13 13 O 1.21592 * 119.99157 * 4.59119 * 12 11 10 14 14 N 1.34774 * 120.00417 * 184.59396 * 12 11 10 15 15 C 1.46503 * 119.99963 * 179.72410 * 14 12 11 16 16 C 1.53001 * 109.47124 * 175.60839 * 15 14 12 17 17 C 1.50703 * 115.54435 * 56.47366 * 16 15 14 18 18 H 1.08002 * 119.99614 * 267.81245 * 17 16 15 19 19 C 1.37878 * 120.00318 * 87.82309 * 17 16 15 20 20 N 1.31513 * 119.99840 * 2.91421 * 19 17 16 21 21 Si 1.86796 * 120.00106 * 182.91153 * 19 17 16 22 22 H 1.48506 * 109.46737 * 90.00151 * 21 19 17 23 23 H 1.48502 * 109.47248 * 209.99832 * 21 19 17 24 24 H 1.48501 * 109.47176 * 330.00129 * 21 19 17 25 25 C 1.52996 * 117.50125 * 270.80183 * 16 15 14 26 26 C 1.52994 * 117.49841 * 202.14114 * 16 15 14 27 27 H 1.08997 * 109.47336 * 176.38336 * 1 2 3 28 28 H 1.09002 * 109.47201 * 296.39295 * 1 2 3 29 29 H 1.09004 * 109.47082 * 56.38853 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00476 * 4 2 1 31 31 H 1.09000 * 109.47381 * 300.00867 * 4 2 1 32 32 H 1.08000 * 119.96515 * 359.96993 * 6 5 4 33 33 H 1.07999 * 119.92612 * 179.70058 * 7 6 5 34 34 H 1.07995 * 119.96504 * 180.02562 * 8 7 6 35 35 H 1.08005 * 120.03174 * 180.02562 * 9 8 7 36 36 H 0.97006 * 119.99833 * 328.56097 * 11 10 5 37 37 H 0.96998 * 119.99812 * 359.97438 * 14 12 11 38 38 H 1.09003 * 109.47192 * 295.61664 * 15 14 12 39 39 H 1.09004 * 109.46787 * 55.61032 * 15 14 12 40 40 H 0.96996 * 120.00396 * 185.01674 * 20 19 17 41 41 H 1.09001 * 117.49662 * 359.97438 * 25 16 15 42 42 H 1.09000 * 117.49843 * 145.01911 * 25 16 15 43 43 H 1.09003 * 117.49909 * 214.98441 * 26 16 15 44 44 H 1.09003 * 117.50133 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2221 -0.7856 -1.5833 5 6 3.7194 -0.8617 -1.7352 6 6 4.4078 0.1777 -2.3302 7 6 5.7809 0.1058 -2.4755 8 6 6.4704 -1.0031 -2.0198 9 6 5.7887 -2.0427 -1.4184 10 6 4.4095 -1.9736 -1.2710 11 7 3.7158 -3.0255 -0.6621 12 6 4.1710 -4.2889 -0.7770 13 8 5.2277 -4.5055 -1.3380 14 7 3.4548 -5.3119 -0.2701 15 6 3.9467 -6.6857 -0.4004 16 6 3.0103 -7.6359 0.3487 17 6 1.5642 -7.5896 -0.0730 18 1 0.8738 -6.9340 0.4369 19 6 1.1225 -8.3844 -1.1095 20 7 1.9495 -9.2245 -1.6924 21 14 -0.6505 -8.2678 -1.6858 22 1 -0.7569 -7.2430 -2.7554 23 1 -1.0860 -9.5845 -2.2168 24 1 -1.5180 -7.8830 -0.5436 25 6 3.3073 -7.9017 1.8259 26 6 3.5766 -8.9892 0.7829 27 1 -0.3634 -1.0256 -0.0648 28 1 -0.3634 0.4568 0.9206 29 1 -0.3633 0.5689 -0.8559 30 1 1.8032 -0.1971 -2.3995 31 1 1.8031 -1.7916 -1.6085 32 1 3.8723 1.0449 -2.6872 33 1 6.3162 0.9175 -2.9454 34 1 7.5429 -1.0561 -2.1343 35 1 6.3278 -2.9083 -1.0624 36 1 2.9073 -2.8453 -0.1572 37 1 2.6120 -5.1390 0.1777 38 1 3.9779 -6.9621 -1.4543 39 1 4.9488 -6.7545 0.0230 40 1 1.6603 -9.7305 -2.4677 41 1 4.1701 -7.3999 2.2639 42 1 2.4568 -8.0435 2.4926 43 1 2.9032 -9.8461 0.7640 44 1 4.6163 -9.2029 0.5345 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432416708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:36:49 Heat of formation + Delta-G solvation = -10.707926 kcal Electronic energy + Delta-G solvation = -26544.769041 eV Core-core repulsion = 22782.885186 eV Total energy + Delta-G solvation = -3761.883856 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.51645 -38.65338 -36.80847 -35.91084 -34.62017 -33.48569 -32.67550 -32.02203 -29.61520 -29.26545 -27.13368 -26.18603 -25.20356 -22.83813 -21.49177 -21.16436 -20.37280 -19.48143 -18.09058 -17.75613 -17.43673 -16.22495 -15.93068 -15.73189 -15.38161 -15.03092 -14.88965 -14.69298 -14.44619 -14.23220 -13.99495 -13.74816 -13.43622 -13.20876 -12.96559 -12.90983 -12.72868 -12.63114 -12.08441 -11.95256 -11.65338 -11.49107 -11.32494 -11.08488 -10.98846 -10.61565 -10.58880 -10.28503 -10.26671 -9.70442 -9.50589 -9.12354 -8.93629 -8.57453 -8.44507 -8.36049 -8.16577 -7.81341 -6.14906 -4.25018 0.91755 1.44988 1.64949 2.34142 2.91436 3.19535 3.27992 3.28805 3.46883 3.52436 3.93515 4.28267 4.49576 4.58874 4.66648 4.83279 4.97059 5.08180 5.13655 5.14812 5.29548 5.34302 5.46206 5.63568 5.64910 5.74513 5.96052 6.06905 6.28723 6.32516 6.39675 6.45017 6.49115 6.57236 6.65256 6.67975 6.76772 7.08479 7.13989 7.16048 7.26069 7.35179 7.53172 7.72842 8.26324 8.41251 8.76779 8.93906 9.42964 10.92784 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.011306 B = 0.003430 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.008683 B = 8160.420609 C = 9465.440481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.494 4.494 2 S 1.236 4.764 3 O -0.841 6.841 4 C -0.403 4.403 5 C -0.107 4.107 6 C -0.091 4.091 7 C -0.142 4.142 8 C -0.100 4.100 9 C -0.123 4.123 10 C 0.186 3.814 11 N -0.690 5.690 12 C 0.696 3.304 13 O -0.583 6.583 14 N -0.710 5.710 15 C 0.180 3.820 16 C 0.022 3.978 17 C -0.501 4.501 18 H 0.060 0.940 19 C 0.075 3.925 20 N -0.872 5.872 21 Si 0.888 3.112 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.273 1.273 25 C -0.211 4.211 26 C -0.140 4.140 27 H 0.116 0.884 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.125 0.875 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.153 0.847 36 H 0.403 0.597 37 H 0.401 0.599 38 H 0.065 0.935 39 H 0.041 0.959 40 H 0.262 0.738 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.768 14.895 3.707 15.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 1.435 4.565 3 O -0.836 6.836 4 C -0.539 4.539 5 C -0.111 4.111 6 C -0.111 4.111 7 C -0.161 4.161 8 C -0.119 4.119 9 C -0.143 4.143 10 C 0.088 3.912 11 N -0.337 5.337 12 C 0.397 3.603 13 O -0.461 6.461 14 N -0.362 5.362 15 C 0.057 3.943 16 C 0.021 3.979 17 C -0.538 4.538 18 H 0.078 0.922 19 C -0.129 4.129 20 N -0.508 5.508 21 Si 0.715 3.285 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.198 1.198 25 C -0.248 4.248 26 C -0.178 4.178 27 H 0.135 0.865 28 H 0.125 0.875 29 H 0.099 0.901 30 H 0.117 0.883 31 H 0.144 0.856 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.170 0.830 36 H 0.238 0.762 37 H 0.235 0.765 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.245 14.712 3.814 15.364 hybrid contribution -2.804 1.230 -1.943 3.627 sum -0.559 15.943 1.870 16.062 Atomic orbital electron populations 1.27699 1.21720 1.08462 1.07283 1.70719 0.86435 0.99701 0.99676 1.93143 1.73324 1.36190 1.80945 1.26602 0.98258 1.10859 1.18152 1.18714 0.92158 0.96294 1.03956 1.20759 0.94517 0.97299 0.98508 1.21026 0.94054 0.98752 1.02303 1.21104 0.99962 0.93160 0.97661 1.21541 0.92401 0.99825 1.00559 1.17308 0.91113 0.86858 0.95913 1.42707 1.30008 1.05049 1.55962 1.16033 0.84263 0.80011 0.80029 1.90857 1.23121 1.83424 1.48713 1.45184 1.24957 1.06166 1.59914 1.20897 0.94724 0.77627 1.01060 1.19038 0.94930 0.93960 0.89993 1.20321 0.91615 1.24032 1.17855 0.92165 1.24976 0.97207 0.94078 0.96667 1.69989 1.35678 1.24594 1.20564 0.86671 0.85244 0.77523 0.79033 1.20699 1.21244 1.19791 1.23064 1.01198 1.06408 0.94141 1.22449 0.99053 0.94042 1.02247 0.86514 0.87502 0.90112 0.88310 0.85640 0.86332 0.86235 0.85799 0.82978 0.76208 0.76472 0.91673 0.94026 0.92834 0.91658 0.90400 0.89419 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -3.29 10.74 101.05 1.09 -2.21 16 2 S 1.24 10.17 13.78 -107.50 -1.48 8.69 16 3 O -0.84 -12.16 18.14 -35.23 -0.64 -12.80 16 4 C -0.40 -3.78 5.50 36.00 0.20 -3.58 16 5 C -0.11 -1.31 5.16 -104.44 -0.54 -1.85 16 6 C -0.09 -1.14 9.70 -39.61 -0.38 -1.52 16 7 C -0.14 -1.68 10.04 -39.55 -0.40 -2.08 16 8 C -0.10 -1.23 10.04 -39.61 -0.40 -1.63 16 9 C -0.12 -1.77 8.73 -39.39 -0.34 -2.11 16 10 C 0.19 2.51 6.35 -83.69 -0.53 1.98 16 11 N -0.69 -8.77 4.83 -14.22 -0.07 -8.84 16 12 C 0.70 11.74 8.43 -86.92 -0.73 11.01 16 13 O -0.58 -11.85 13.54 5.28 0.07 -11.78 16 14 N -0.71 -12.15 5.43 -65.22 -0.35 -12.50 16 15 C 0.18 3.72 5.55 -4.04 -0.02 3.70 16 16 C 0.02 0.47 1.63 -155.66 -0.25 0.21 16 17 C -0.50 -11.81 8.19 -34.44 -0.28 -12.09 16 18 H 0.06 1.36 7.82 -52.49 -0.41 0.95 16 19 C 0.08 1.87 5.42 -17.82 -0.10 1.77 16 20 N -0.87 -23.03 12.50 55.43 0.69 -22.34 16 21 Si 0.89 19.32 29.54 -169.99 -5.02 14.30 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 25 C -0.21 -4.07 9.93 -26.70 -0.27 -4.33 16 26 C -0.14 -3.02 9.06 -26.70 -0.24 -3.26 16 27 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.11 0.65 8.14 -51.92 -0.42 0.23 16 29 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 30 H 0.10 0.92 8.09 -51.92 -0.42 0.50 16 31 H 0.13 0.98 7.11 -51.92 -0.37 0.61 16 32 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 33 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 35 H 0.15 2.43 5.92 -52.48 -0.31 2.12 16 36 H 0.40 3.50 7.71 -40.82 -0.31 3.18 16 37 H 0.40 6.00 8.04 -40.82 -0.33 5.67 16 38 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.04 0.84 8.10 -51.93 -0.42 0.42 16 40 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.09 2.06 8.08 -51.93 -0.42 1.64 16 44 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 383.89 15.07 5.79 5.79 Total: -1.00 -33.71 383.89 -10.58 -44.28 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -6.36 Total: 11.21 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -3.20 Total: -16.00 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.27 Total: -43.67 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.57 Total: -24.58 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Atomic # 16 Polarization: 10.17 SS G_CDS: -1.48 Total: 8.69 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.71 -10.58 -44.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432416708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.575 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds