Wall clock time and date at job start Sat Apr 11 2020 04:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86806 * 119.99787 * 2 1 4 4 H 1.48497 * 109.47381 * 270.00296 * 3 2 1 5 5 H 1.48499 * 109.47128 * 30.00619 * 3 2 1 6 6 H 1.48502 * 109.46498 * 150.00415 * 3 2 1 7 7 C 1.38805 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00392 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00063 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00341 * 174.96570 * 9 7 2 11 11 C 1.52999 * 115.54867 * 65.63513 * 10 9 7 12 12 N 1.46499 * 109.47370 * 30.46504 * 11 10 9 13 13 C 1.34778 * 120.00476 * 185.22181 * 12 11 10 14 14 O 1.21280 * 119.99940 * 359.97438 * 13 12 11 15 15 C 1.50694 * 120.00085 * 180.02562 * 13 12 11 16 16 H 1.09001 * 115.55199 * 34.32672 * 15 13 12 17 17 C 1.53001 * 117.50146 * 248.61843 * 15 13 12 18 18 C 1.52999 * 60.00242 * 252.51088 * 17 15 13 19 19 H 1.09001 * 117.49775 * 252.50903 * 18 17 15 20 20 C 1.50705 * 117.49935 * 107.48599 * 18 17 15 21 21 C 1.38200 * 119.99761 * 351.10226 * 20 18 17 22 22 C 1.38430 * 119.99688 * 179.81783 * 21 20 18 23 23 F 1.35102 * 120.00050 * 180.21353 * 22 21 20 24 24 C 1.38474 * 119.99947 * 0.40911 * 22 21 20 25 25 C 1.38162 * 120.00072 * 359.84521 * 24 22 21 26 26 C 1.38421 * 119.99663 * 171.37916 * 20 18 17 27 27 F 1.35096 * 120.00639 * 359.95350 * 26 20 18 28 28 C 1.52994 * 117.52167 * 211.33366 * 10 9 7 29 29 C 1.52998 * 117.49999 * 279.96618 * 10 9 7 30 30 H 0.97003 * 119.99493 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99754 * 354.96566 * 9 7 2 32 32 H 1.08996 * 109.47507 * 150.46985 * 11 10 9 33 33 H 1.09001 * 109.47240 * 270.46822 * 11 10 9 34 34 H 0.97008 * 120.00109 * 5.22361 * 12 11 10 35 35 H 1.09004 * 117.49322 * 0.02562 * 17 15 13 36 36 H 1.08995 * 117.50253 * 145.01977 * 17 15 13 37 37 H 1.07997 * 120.00581 * 359.97438 * 21 20 18 38 38 H 1.08001 * 119.99842 * 179.81394 * 24 22 21 39 39 H 1.07997 * 119.99963 * 179.97438 * 25 24 22 40 40 H 1.09003 * 117.50065 * 214.97243 * 28 10 9 41 41 H 1.09002 * 117.49836 * 359.97438 * 28 10 9 42 42 H 1.08998 * 117.50087 * 359.97438 * 29 10 9 43 43 H 1.09009 * 117.49836 * 144.97436 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0538 -3.6543 -0.1124 11 6 2.9701 -3.9948 1.0646 12 7 2.4182 -3.4219 2.2948 13 6 3.1124 -3.5041 3.4471 14 8 4.1938 -4.0528 3.4658 15 6 2.5443 -2.9153 4.7126 16 1 1.4606 -2.9745 4.8136 17 6 3.2422 -1.6843 5.2944 18 6 3.3805 -3.0411 5.9878 19 1 2.8469 -3.1827 6.9277 20 6 4.7092 -3.7444 5.8820 21 6 5.6834 -3.2565 5.0318 22 6 6.9052 -3.9004 4.9374 23 9 7.8592 -3.4211 4.1095 24 6 7.1482 -5.0380 5.6886 25 6 6.1723 -5.5287 6.5346 26 6 4.9516 -4.8822 6.6321 27 9 3.9976 -5.3617 7.4598 28 6 1.3496 -4.8148 -0.8181 29 6 2.5059 -4.0883 -1.5082 30 1 -0.4849 0.8401 0.0004 31 1 0.3585 -2.3896 0.0736 32 1 3.0415 -5.0774 1.1681 33 1 3.9622 -3.5808 0.8844 34 1 1.5530 -2.9833 2.2801 35 1 4.1120 -1.3001 4.7615 36 1 2.6176 -0.9332 5.7781 37 1 5.4925 -2.3716 4.4428 38 1 8.1004 -5.5420 5.6127 39 1 6.3617 -6.4162 7.1202 40 1 1.5391 -5.8209 -0.4439 41 1 0.3440 -4.6364 -1.1990 42 1 2.2612 -3.4319 -2.3433 43 1 3.4563 -4.6161 -1.5879 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754534310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:36:33 Heat of formation + Delta-G solvation = -25.307753 kcal Electronic energy + Delta-G solvation = -29189.500518 eV Core-core repulsion = 24873.143180 eV Total energy + Delta-G solvation = -4316.357338 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.139 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.88910 -48.76722 -40.31113 -38.56357 -37.55917 -36.15500 -33.61435 -33.15762 -30.95470 -29.89026 -29.75629 -27.11187 -24.52036 -24.00247 -23.43999 -22.51365 -21.86398 -20.95893 -19.72992 -19.02475 -18.05650 -17.30738 -17.17438 -16.98971 -16.29956 -16.03280 -15.76827 -15.24639 -15.00383 -14.85170 -14.50509 -14.35964 -14.28970 -14.14065 -13.65563 -13.51272 -13.21376 -13.17304 -12.73259 -12.55278 -12.47359 -12.10222 -11.89314 -11.67237 -11.08270 -11.04456 -10.96666 -10.92620 -10.80218 -10.53046 -10.38743 -10.31032 -9.80942 -9.67280 -9.37546 -8.95596 -8.57282 -8.38046 -8.31372 -7.17861 -5.92336 -3.24076 1.00324 1.14522 2.77392 3.34448 3.38955 3.41619 3.41973 3.57006 3.93602 4.22059 4.23983 4.36059 4.45211 4.51038 4.55256 4.81612 4.83880 4.97624 5.09728 5.19243 5.20525 5.24778 5.31583 5.47522 5.53636 5.62233 5.69344 5.76378 5.88404 5.90936 5.99024 6.09545 6.10576 6.13403 6.18223 6.26718 6.31646 6.42732 6.57914 6.76206 6.86332 6.99385 7.63619 8.07735 8.25433 8.67356 9.37153 9.88589 10.24758 11.29019 Molecular weight = 336.14amu Principal moments of inertia in cm(-1) A = 0.012029 B = 0.003561 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.079260 B = 7861.282673 C = 8309.268459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.007 4.007 3 Si 0.905 3.095 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.688 5.688 10 C 0.126 3.874 11 C 0.153 3.847 12 N -0.691 5.691 13 C 0.533 3.467 14 O -0.547 6.547 15 C -0.169 4.169 16 H 0.130 0.870 17 C -0.140 4.140 18 C -0.094 4.094 19 H 0.126 0.874 20 C -0.045 4.045 21 C -0.053 4.053 22 C 0.081 3.919 23 F -0.140 7.140 24 C -0.128 4.128 25 C -0.137 4.137 26 C 0.092 3.908 27 F -0.139 7.139 28 C -0.185 4.185 29 C -0.191 4.191 30 H 0.257 0.743 31 H 0.388 0.612 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.411 0.589 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.620 -9.370 12.559 17.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.736 3.264 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.329 5.329 10 C 0.032 3.968 11 C 0.027 3.973 12 N -0.341 5.341 13 C 0.319 3.681 14 O -0.427 6.427 15 C -0.190 4.190 16 H 0.148 0.852 17 C -0.177 4.177 18 C -0.113 4.113 19 H 0.144 0.856 20 C -0.046 4.046 21 C -0.072 4.072 22 C 0.062 3.938 23 F -0.119 7.119 24 C -0.147 4.147 25 C -0.156 4.156 26 C 0.073 3.927 27 F -0.118 7.118 28 C -0.223 4.223 29 C -0.231 4.231 30 H 0.067 0.933 31 H 0.223 0.777 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.249 0.751 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.442 -9.573 12.526 17.883 hybrid contribution -0.442 1.120 -0.386 1.265 sum 8.000 -8.453 12.139 16.817 Atomic orbital electron populations 1.69655 1.05056 1.25923 1.57148 1.24735 0.95461 0.97637 1.02456 0.86229 0.78765 0.83752 0.77689 1.21623 1.21712 1.20673 1.19123 0.91031 0.83300 1.43207 0.91147 1.41810 1.05763 0.98588 1.86711 1.20235 0.97397 0.88245 0.90877 1.21046 0.96861 0.96252 0.83147 1.45798 1.23618 1.57414 1.07269 1.19537 0.84804 0.79624 0.84161 1.90696 1.21111 1.45146 1.85773 1.22325 0.99997 1.04114 0.92589 0.85247 1.23144 1.02789 0.90207 1.01540 1.20937 0.94143 0.99715 0.96483 0.85616 1.18632 0.94710 0.94535 0.96687 1.20644 0.90268 1.00409 0.95874 1.17510 0.87075 0.95713 0.93520 1.91493 1.62636 1.87731 1.70019 1.20832 1.00540 0.95891 0.97444 1.20746 0.92089 1.01364 1.01427 1.17329 0.87028 0.94800 0.93563 1.91462 1.63001 1.87574 1.69768 1.23191 0.97831 0.95865 1.05407 1.23352 0.97334 1.03682 0.98731 0.93347 0.77662 0.92425 0.91738 0.75103 0.87701 0.86851 0.84526 0.84410 0.84318 0.89450 0.89072 0.88669 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.92 13.06 55.49 0.72 -25.20 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 3 Si 0.90 21.35 29.55 -169.99 -5.02 16.33 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.24 -5.97 9.77 -15.06 -0.15 -6.12 16 8 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 9 N -0.69 -15.41 4.29 -47.24 -0.20 -15.61 16 10 C 0.13 2.34 2.52 -131.82 -0.33 2.01 16 11 C 0.15 2.71 5.73 -4.04 -0.02 2.68 16 12 N -0.69 -11.88 5.35 -60.30 -0.32 -12.21 16 13 C 0.53 8.80 7.46 -10.99 -0.08 8.72 16 14 O -0.55 -10.01 11.67 5.56 0.06 -9.94 16 15 C -0.17 -2.24 6.19 -91.77 -0.57 -2.81 16 16 H 0.13 1.49 8.14 -51.93 -0.42 1.06 16 17 C -0.14 -1.64 9.57 -26.73 -0.26 -1.90 16 18 C -0.09 -1.14 5.80 -91.77 -0.53 -1.67 16 19 H 0.13 1.30 7.86 -51.93 -0.41 0.89 16 20 C -0.04 -0.61 4.38 -104.57 -0.46 -1.06 16 21 C -0.05 -0.77 6.14 -39.52 -0.24 -1.01 16 22 C 0.08 1.14 7.30 -39.42 -0.29 0.86 16 23 F -0.14 -2.09 17.27 2.25 0.04 -2.06 16 24 C -0.13 -1.50 10.02 -39.52 -0.40 -1.90 16 25 C -0.14 -1.56 10.02 -39.52 -0.40 -1.96 16 26 C 0.09 1.20 7.24 -39.43 -0.29 0.91 16 27 F -0.14 -1.80 16.61 2.25 0.04 -1.76 16 28 C -0.19 -2.94 10.10 -26.73 -0.27 -3.21 16 29 C -0.19 -3.26 10.18 -26.73 -0.27 -3.54 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.39 9.27 8.04 -40.82 -0.33 8.94 16 32 H 0.06 0.95 7.88 -51.93 -0.41 0.54 16 33 H 0.06 1.24 8.13 -51.93 -0.42 0.81 16 34 H 0.41 7.30 7.61 -40.82 -0.31 6.99 16 35 H 0.10 1.32 6.19 -51.93 -0.32 1.00 16 36 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.14 2.03 5.76 -52.49 -0.30 1.73 16 38 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 39 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.09 1.21 8.03 -51.93 -0.42 0.79 16 41 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 42 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 43 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 LS Contribution 369.53 15.07 5.57 5.57 Total: -1.00 -28.76 369.53 -9.18 -37.95 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -5.42 Total: 17.20 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -4.64 Total: -10.27 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 0.20 Total: -53.01 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.06 Total: -9.94 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.08 Total: -3.82 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.76 -9.18 -37.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754534310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.638 kcal (2) G-P(sol) polarization free energy of solvation -28.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds