Wall clock time and date at job start Sat Apr 11 2020 04:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00152 * 2 1 4 4 H 1.48503 * 109.47257 * 274.78607 * 3 2 1 5 5 H 1.48505 * 109.47515 * 34.78365 * 3 2 1 6 6 H 1.48505 * 109.47506 * 154.78380 * 3 2 1 7 7 C 1.37877 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00190 * 4.98445 * 7 2 1 9 9 C 1.50701 * 119.99922 * 184.97969 * 7 2 1 10 10 N 1.46505 * 109.47065 * 185.20600 * 9 7 2 11 11 C 1.46503 * 119.99810 * 95.68933 * 10 9 7 12 12 C 1.50701 * 109.46714 * 260.56478 * 11 10 9 13 13 C 1.38229 * 119.61875 * 214.13851 * 12 11 10 14 14 C 1.38627 * 119.16137 * 179.79320 * 13 12 11 15 15 C 1.38676 * 118.42036 * 0.47583 * 14 13 12 16 16 C 1.38174 * 119.16256 * 359.50618 * 15 14 13 17 17 N 1.31854 * 119.61955 * 34.16749 * 12 11 10 18 18 C 1.34777 * 120.00119 * 275.69160 * 10 9 7 19 19 O 1.21652 * 119.99817 * 343.40149 * 18 10 9 20 20 C 1.47049 * 119.99783 * 163.40784 * 18 10 9 21 21 C 1.37594 * 119.93247 * 311.10849 * 20 18 10 22 22 C 1.39949 * 120.01282 * 179.97438 * 21 20 18 23 23 C 1.36214 * 119.92085 * 0.02562 * 22 21 20 24 24 C 1.40918 * 119.79664 * 359.97438 * 23 22 21 25 25 N 1.32581 * 132.18675 * 179.97438 * 24 23 22 26 26 C 1.33236 * 109.14163 * 180.02562 * 25 24 23 27 27 C 1.35456 * 108.57635 * 359.97438 * 26 25 24 28 28 N 1.36254 * 107.17561 * 359.76683 * 27 26 25 29 29 H 0.96996 * 119.99826 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46951 * 65.20978 * 9 7 2 31 31 H 1.08994 * 109.47280 * 305.20665 * 9 7 2 32 32 H 1.08999 * 109.46964 * 140.57273 * 11 10 9 33 33 H 1.09000 * 109.47197 * 20.56487 * 11 10 9 34 34 H 1.08003 * 120.41513 * 0.02562 * 13 12 11 35 35 H 1.08002 * 120.78560 * 180.23530 * 14 13 12 36 36 H 1.07999 * 120.41263 * 179.77827 * 15 14 13 37 37 H 1.08002 * 119.61610 * 180.25274 * 16 15 14 38 38 H 1.07990 * 119.99469 * 0.02562 * 21 20 18 39 39 H 1.08004 * 120.03622 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.09884 * 180.02562 * 23 22 21 41 41 H 1.07994 * 125.71044 * 180.02562 * 26 25 24 42 42 H 1.07998 * 126.40838 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.3955 2.1048 -1.3952 5 1 1.5009 2.6214 0.7987 6 1 3.5937 1.4131 0.5965 7 6 2.0045 -1.1941 0.0005 8 1 1.4676 -2.1277 -0.0803 9 6 3.5073 -1.1965 0.1138 10 7 4.0059 -2.5662 -0.0334 11 6 4.4674 -3.0411 -1.3402 12 6 3.3779 -3.8519 -1.9934 13 6 3.7132 -4.9313 -2.7892 14 6 2.7032 -5.6731 -3.3819 15 6 1.3880 -5.2939 -3.1591 16 6 1.1294 -4.2033 -2.3511 17 7 2.1157 -3.5232 -1.7996 18 6 4.0400 -3.3892 1.0333 19 8 3.9518 -2.9322 2.1572 20 6 4.1839 -4.8396 0.8385 21 6 3.3787 -5.4943 -0.0651 22 6 3.5147 -6.8745 -0.2522 23 6 4.4444 -7.5686 0.4614 24 6 5.2660 -6.8925 1.3853 25 7 6.2295 -7.3121 2.1936 26 6 6.7080 -6.2743 2.8785 27 6 6.0358 -5.1608 2.5004 28 7 5.1293 -5.5392 1.5562 29 1 -0.4850 0.8400 -0.0004 30 1 3.7987 -0.8066 1.0891 31 1 3.9317 -0.5691 -0.6699 32 1 5.3534 -3.6623 -1.2088 33 1 4.7128 -2.1870 -1.9714 34 1 4.7489 -5.1955 -2.9441 35 1 2.9353 -6.5238 -4.0055 36 1 0.5761 -5.8468 -3.6079 37 1 0.1077 -3.9040 -2.1693 38 1 2.6423 -4.9427 -0.6305 39 1 2.8825 -7.3888 -0.9611 40 1 4.5520 -8.6337 0.3190 41 1 7.4999 -6.3142 3.6117 42 1 6.1917 -4.1598 2.8747 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770418708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:35:30 Heat of formation + Delta-G solvation = 141.107200 kcal Electronic energy + Delta-G solvation = -29645.045141 eV Core-core repulsion = 25786.593283 eV Total energy + Delta-G solvation = -3858.451858 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.133 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.77514 -40.70852 -39.06630 -36.93315 -35.51975 -33.52954 -32.70654 -32.26816 -31.50238 -30.28313 -28.99828 -28.13692 -26.37165 -24.58861 -23.35738 -22.87135 -22.47219 -22.04361 -21.49251 -19.13152 -17.77469 -17.28044 -17.10324 -16.60151 -16.42450 -16.20793 -15.75311 -15.59516 -15.36068 -15.13787 -14.41180 -14.30901 -13.99803 -13.67540 -13.41409 -13.26584 -13.07061 -12.93427 -12.47014 -12.25960 -12.16512 -11.89193 -11.72438 -11.70280 -11.50332 -11.04968 -10.94099 -10.60203 -10.22525 -10.21181 -9.70067 -9.63924 -9.50857 -8.98785 -8.76861 -8.57176 -8.49483 -7.97157 -7.76611 -5.99454 -3.93829 0.49235 1.13933 1.31867 1.46541 2.38069 2.77295 3.15702 3.27568 3.36313 3.37572 3.54690 3.56420 3.92747 4.23993 4.39641 4.44474 4.46978 4.65030 4.81890 4.89096 4.97068 5.02450 5.09813 5.19573 5.31456 5.36352 5.44748 5.47691 5.52419 5.58911 5.69549 5.82821 5.86013 6.00683 6.09959 6.14973 6.24426 6.39942 6.54324 6.65865 6.79031 6.90389 7.02463 7.12068 7.63043 7.87458 7.88670 8.30133 8.44233 8.62439 9.22309 9.61044 11.13769 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.011578 B = 0.005345 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.737940 B = 5237.105995 C = 6969.565097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.863 3.137 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.509 4.509 8 H 0.101 0.899 9 C 0.220 3.780 10 N -0.568 5.568 11 C 0.159 3.841 12 C 0.109 3.891 13 C -0.174 4.174 14 C -0.078 4.078 15 C -0.183 4.183 16 C 0.107 3.893 17 N -0.425 5.425 18 C 0.566 3.434 19 O -0.516 6.516 20 C 0.048 3.952 21 C -0.112 4.112 22 C -0.104 4.104 23 C -0.067 4.067 24 C 0.208 3.792 25 N -0.492 5.492 26 C 0.024 3.976 27 C -0.078 4.078 28 N -0.335 5.335 29 H 0.261 0.739 30 H 0.040 0.960 31 H 0.028 0.972 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.158 0.842 38 H 0.172 0.828 39 H 0.142 0.858 40 H 0.151 0.849 41 H 0.181 0.819 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.942 -13.862 -7.564 18.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.690 3.310 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.548 4.548 8 H 0.118 0.882 9 C 0.101 3.899 10 N -0.298 5.298 11 C 0.034 3.966 12 C -0.029 4.029 13 C -0.195 4.195 14 C -0.104 4.104 15 C -0.203 4.203 16 C -0.050 4.050 17 N -0.134 5.134 18 C 0.350 3.650 19 O -0.392 6.392 20 C -0.058 4.058 21 C -0.133 4.133 22 C -0.128 4.128 23 C -0.087 4.087 24 C -0.034 4.034 25 N -0.212 5.212 26 C -0.129 4.129 27 C -0.212 4.212 28 N -0.007 5.007 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.100 0.900 33 H 0.125 0.875 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.176 0.824 38 H 0.188 0.812 39 H 0.160 0.840 40 H 0.168 0.832 41 H 0.198 0.802 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 8.852 -13.446 -6.324 17.296 hybrid contribution 0.085 1.093 -0.787 1.350 sum 8.938 -12.353 -7.111 16.824 Atomic orbital electron populations 1.69877 1.05973 1.26392 1.51518 1.24781 0.94652 0.98219 0.95305 0.87079 0.80696 0.85086 0.78129 1.20509 1.21164 1.19150 1.21504 0.88711 0.95886 1.48688 0.88167 1.19880 0.96593 0.75913 0.97507 1.47628 1.61565 1.14591 1.05987 1.20517 0.92411 0.98448 0.85188 1.21798 0.93728 0.93231 0.94150 1.21872 1.00602 0.97056 0.99962 1.21443 0.92630 0.98712 0.97610 1.22210 0.97419 0.99576 1.01094 1.23080 0.99421 0.90717 0.91794 1.68099 0.98792 1.26880 1.19583 1.17379 0.78306 0.83771 0.85557 1.90826 1.49056 1.76259 1.23054 1.20584 0.94535 0.93995 0.96705 1.22309 0.99659 0.95522 0.95848 1.20930 0.98419 0.93352 1.00085 1.20317 0.94017 1.00574 0.93778 1.20952 1.00110 0.80425 1.01930 1.70623 1.10762 1.29993 1.09870 1.22479 1.01503 0.87591 1.01277 1.22837 0.97244 1.02628 0.98469 1.42677 1.22774 1.09318 1.25964 0.92932 0.94211 0.95382 0.90048 0.87542 0.85213 0.85143 0.85070 0.82441 0.81158 0.83984 0.83181 0.80194 0.80062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.78 13.96 55.43 0.77 -26.01 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.86 20.85 27.42 -169.99 -4.66 16.19 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.21 6.66 56.52 0.38 -5.83 16 7 C -0.51 -13.73 9.06 -34.44 -0.31 -14.04 16 8 H 0.10 2.91 6.52 -52.48 -0.34 2.56 16 9 C 0.22 5.12 4.28 -5.19 -0.02 5.09 16 10 N -0.57 -11.15 2.19 -177.84 -0.39 -11.53 16 11 C 0.16 2.38 5.56 -5.19 -0.03 2.35 16 12 C 0.11 1.58 3.50 -82.59 -0.29 1.29 16 13 C -0.17 -1.88 7.77 -39.44 -0.31 -2.19 16 14 C -0.08 -0.73 10.17 -39.28 -0.40 -1.13 16 15 C -0.18 -1.92 10.11 -39.44 -0.40 -2.32 16 16 C 0.11 1.55 10.50 -17.55 -0.18 1.37 16 17 N -0.42 -7.39 6.34 -9.47 -0.06 -7.45 16 18 C 0.57 11.67 6.78 -12.69 -0.09 11.58 16 19 O -0.52 -12.52 16.17 5.23 0.08 -12.43 16 20 C 0.05 0.84 5.68 -81.86 -0.47 0.38 16 21 C -0.11 -1.69 6.41 -39.18 -0.25 -1.94 16 22 C -0.10 -1.23 9.65 -39.67 -0.38 -1.61 16 23 C -0.07 -0.82 10.09 -39.30 -0.40 -1.22 16 24 C 0.21 3.24 7.80 -156.02 -1.22 2.02 16 25 N -0.49 -7.82 11.31 -12.76 -0.14 -7.96 16 26 C 0.02 0.34 11.83 -17.94 -0.21 0.12 16 27 C -0.08 -1.23 11.04 -16.58 -0.18 -1.41 16 28 N -0.34 -5.62 2.97 -58.75 -0.17 -5.79 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.04 1.00 7.07 -51.93 -0.37 0.64 16 31 H 0.03 0.61 6.74 -51.93 -0.35 0.26 16 32 H 0.08 1.01 7.61 -51.93 -0.40 0.61 16 33 H 0.11 1.45 7.74 -51.93 -0.40 1.05 16 34 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 35 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.16 2.27 8.06 -52.49 -0.42 1.85 16 38 H 0.17 2.72 3.10 -52.49 -0.16 2.56 16 39 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 40 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 41 H 0.18 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.18 2.72 7.84 -52.49 -0.41 2.31 16 LS Contribution 348.26 15.07 5.25 5.25 Total: -1.00 -35.19 348.26 -9.11 -44.29 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -4.55 Total: 5.18 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -5.23 Total: 0.27 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.01 Total: -58.75 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.08 Total: -12.43 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.66 Total: 16.19 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.19 -9.11 -44.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770418708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.398 kcal (2) G-P(sol) polarization free energy of solvation -35.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds