Wall clock time and date at job start Sat Apr 11 2020 04:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00152 * 2 1 4 4 H 1.48503 * 109.47257 * 274.78607 * 3 2 1 5 5 H 1.48505 * 109.47515 * 34.78365 * 3 2 1 6 6 H 1.48505 * 109.47506 * 154.78380 * 3 2 1 7 7 C 1.37877 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00190 * 4.98445 * 7 2 1 9 9 C 1.50701 * 119.99922 * 184.97969 * 7 2 1 10 10 N 1.46505 * 109.47065 * 185.20600 * 9 7 2 11 11 C 1.46503 * 119.99810 * 95.68933 * 10 9 7 12 12 C 1.50701 * 109.46714 * 260.56478 * 11 10 9 13 13 C 1.38229 * 119.61875 * 214.13851 * 12 11 10 14 14 C 1.38627 * 119.16137 * 179.79320 * 13 12 11 15 15 C 1.38676 * 118.42036 * 0.47583 * 14 13 12 16 16 C 1.38174 * 119.16256 * 359.50618 * 15 14 13 17 17 N 1.31854 * 119.61955 * 34.16749 * 12 11 10 18 18 C 1.34777 * 120.00119 * 275.69160 * 10 9 7 19 19 O 1.21652 * 119.99817 * 343.40149 * 18 10 9 20 20 C 1.47049 * 119.99783 * 163.40784 * 18 10 9 21 21 C 1.37594 * 119.93247 * 311.10849 * 20 18 10 22 22 C 1.39949 * 120.01282 * 179.97438 * 21 20 18 23 23 C 1.36214 * 119.92085 * 0.02562 * 22 21 20 24 24 C 1.40918 * 119.79664 * 359.97438 * 23 22 21 25 25 N 1.32581 * 132.18675 * 179.97438 * 24 23 22 26 26 C 1.33236 * 109.14163 * 180.02562 * 25 24 23 27 27 C 1.35456 * 108.57635 * 359.97438 * 26 25 24 28 28 N 1.36254 * 107.17561 * 359.76683 * 27 26 25 29 29 H 0.96996 * 119.99826 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46951 * 65.20978 * 9 7 2 31 31 H 1.08994 * 109.47280 * 305.20665 * 9 7 2 32 32 H 1.08999 * 109.46964 * 140.57273 * 11 10 9 33 33 H 1.09000 * 109.47197 * 20.56487 * 11 10 9 34 34 H 1.08003 * 120.41513 * 0.02562 * 13 12 11 35 35 H 1.08002 * 120.78560 * 180.23530 * 14 13 12 36 36 H 1.07999 * 120.41263 * 179.77827 * 15 14 13 37 37 H 1.08002 * 119.61610 * 180.25274 * 16 15 14 38 38 H 1.07990 * 119.99469 * 0.02562 * 21 20 18 39 39 H 1.08004 * 120.03622 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.09884 * 180.02562 * 23 22 21 41 41 H 1.07994 * 125.71044 * 180.02562 * 26 25 24 42 42 H 1.07998 * 126.40838 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.3955 2.1048 -1.3952 5 1 1.5009 2.6214 0.7987 6 1 3.5937 1.4131 0.5965 7 6 2.0045 -1.1941 0.0005 8 1 1.4676 -2.1277 -0.0803 9 6 3.5073 -1.1965 0.1138 10 7 4.0059 -2.5662 -0.0334 11 6 4.4674 -3.0411 -1.3402 12 6 3.3779 -3.8519 -1.9934 13 6 3.7132 -4.9313 -2.7892 14 6 2.7032 -5.6731 -3.3819 15 6 1.3880 -5.2939 -3.1591 16 6 1.1294 -4.2033 -2.3511 17 7 2.1157 -3.5232 -1.7996 18 6 4.0400 -3.3892 1.0333 19 8 3.9518 -2.9322 2.1572 20 6 4.1839 -4.8396 0.8385 21 6 3.3787 -5.4943 -0.0651 22 6 3.5147 -6.8745 -0.2522 23 6 4.4444 -7.5686 0.4614 24 6 5.2660 -6.8925 1.3853 25 7 6.2295 -7.3121 2.1936 26 6 6.7080 -6.2743 2.8785 27 6 6.0358 -5.1608 2.5004 28 7 5.1293 -5.5392 1.5562 29 1 -0.4850 0.8400 -0.0004 30 1 3.7987 -0.8066 1.0891 31 1 3.9317 -0.5691 -0.6699 32 1 5.3534 -3.6623 -1.2088 33 1 4.7128 -2.1870 -1.9714 34 1 4.7489 -5.1955 -2.9441 35 1 2.9353 -6.5238 -4.0055 36 1 0.5761 -5.8468 -3.6079 37 1 0.1077 -3.9040 -2.1693 38 1 2.6423 -4.9427 -0.6305 39 1 2.8825 -7.3888 -0.9611 40 1 4.5520 -8.6337 0.3190 41 1 7.4999 -6.3142 3.6117 42 1 6.1917 -4.1598 2.8747 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770418708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:35:29 Heat of formation + Delta-G solvation = 118.927448 kcal Electronic energy + Delta-G solvation = -29646.006927 eV Core-core repulsion = 25786.593283 eV Total energy + Delta-G solvation = -3859.413644 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.133 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.92370 -41.81111 -40.46624 -38.08233 -37.04020 -34.79741 -34.53581 -33.21199 -32.78530 -31.48278 -30.39433 -29.59081 -27.61464 -25.98964 -24.31630 -24.27477 -23.70318 -23.18147 -22.75033 -20.54742 -19.11091 -18.85761 -18.47019 -17.78083 -17.72033 -17.50158 -16.83757 -16.76824 -16.51625 -16.30839 -16.01709 -15.58665 -15.38021 -14.89591 -14.78703 -14.47084 -14.26615 -14.24372 -13.82899 -13.69573 -13.42989 -13.33761 -12.95392 -12.86974 -12.73399 -12.56924 -12.40612 -12.09021 -12.08592 -11.60640 -11.46431 -11.07119 -10.66456 -10.60501 -10.05711 -9.96152 -9.66433 -9.50297 -8.92126 -8.16373 -6.14646 -0.65236 0.16845 0.29541 0.57824 1.11334 1.32639 1.36157 1.44707 1.49937 1.87626 2.15620 2.39082 2.44230 2.91561 3.14226 3.18108 3.29130 3.38962 3.55661 3.84470 3.89679 4.01633 4.12708 4.23297 4.32398 4.34369 4.38265 4.42417 4.48127 4.54325 4.66535 4.80839 4.83454 4.95032 4.96803 4.97982 5.06392 5.32001 5.36525 5.39867 5.46350 5.56708 5.58484 5.88223 5.91558 6.33918 6.43445 6.74221 6.91296 7.02195 7.34340 7.43742 8.99448 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.011578 B = 0.005345 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.737940 B = 5237.105995 C = 6969.565097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.011 3.989 3 Si 0.927 3.073 4 H -0.264 1.264 5 H -0.290 1.290 6 H -0.254 1.254 7 C -0.501 4.501 8 H 0.070 0.930 9 C 0.228 3.772 10 N -0.568 5.568 11 C 0.152 3.848 12 C 0.086 3.914 13 C -0.159 4.159 14 C -0.063 4.063 15 C -0.162 4.162 16 C 0.074 3.926 17 N -0.483 5.483 18 C 0.560 3.440 19 O -0.573 6.573 20 C 0.015 3.985 21 C -0.094 4.094 22 C -0.096 4.096 23 C -0.049 4.049 24 C 0.192 3.808 25 N -0.508 5.508 26 C 0.034 3.966 27 C -0.107 4.107 28 N -0.342 5.342 29 H 0.260 0.740 30 H 0.016 0.984 31 H 0.048 0.952 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.160 0.840 35 H 0.178 0.822 36 H 0.163 0.837 37 H 0.135 0.865 38 H 0.165 0.835 39 H 0.185 0.815 40 H 0.189 0.811 41 H 0.214 0.786 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.830 -17.117 -10.223 22.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.185 4.185 3 Si 0.752 3.248 4 H -0.189 1.189 5 H -0.217 1.217 6 H -0.178 1.178 7 C -0.540 4.540 8 H 0.088 0.912 9 C 0.107 3.893 10 N -0.296 5.296 11 C 0.028 3.972 12 C -0.051 4.051 13 C -0.179 4.179 14 C -0.089 4.089 15 C -0.182 4.182 16 C -0.083 4.083 17 N -0.193 5.193 18 C 0.347 3.653 19 O -0.453 6.453 20 C -0.091 4.091 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.069 4.069 24 C -0.050 4.050 25 N -0.229 5.229 26 C -0.118 4.118 27 C -0.240 4.240 28 N -0.014 5.014 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.066 0.934 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.178 0.822 35 H 0.196 0.804 36 H 0.180 0.820 37 H 0.153 0.847 38 H 0.181 0.819 39 H 0.202 0.798 40 H 0.207 0.793 41 H 0.230 0.770 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 10.766 -16.726 -9.036 21.847 hybrid contribution -0.542 1.949 -0.007 2.023 sum 10.224 -14.777 -9.043 20.116 Atomic orbital electron populations 1.70038 1.07775 1.27184 1.53786 1.25597 0.95421 1.02079 0.95431 0.86029 0.79693 0.80294 0.78774 1.18888 1.21653 1.17814 1.21683 0.90661 0.94790 1.46865 0.91178 1.19509 0.94383 0.78681 0.96717 1.47535 1.60798 1.13299 1.07979 1.20871 0.93810 0.99549 0.82932 1.21674 0.92400 0.94991 0.96082 1.22148 1.02621 0.95160 0.97984 1.21934 0.91167 0.99127 0.96631 1.22440 0.99365 0.97524 0.98842 1.22959 0.98194 0.92955 0.94151 1.67829 1.00502 1.29291 1.21675 1.17922 0.77065 0.85479 0.84831 1.90770 1.51773 1.77678 1.25099 1.20110 0.97292 0.92106 0.99569 1.22488 0.97877 0.97126 0.94033 1.21276 0.98613 0.91470 1.00600 1.20855 0.92216 1.02202 0.91586 1.21651 1.00632 0.80088 1.02598 1.70655 1.11364 1.30352 1.10507 1.22994 1.01376 0.86500 1.00933 1.22995 0.98383 1.03120 0.99548 1.42733 1.22751 1.09837 1.26080 0.93094 0.96613 0.93400 0.87375 0.86828 0.82226 0.80438 0.81960 0.84735 0.81873 0.79778 0.79349 0.76965 0.80893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.26 13.96 21.45 0.30 -58.96 16 2 C 0.01 0.64 5.47 84.65 0.46 1.11 16 3 Si 0.93 44.32 27.42 68.60 1.88 46.20 16 4 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 6 H -0.25 -11.51 6.66 99.48 0.66 -10.84 16 7 C -0.50 -28.46 9.06 25.60 0.23 -28.23 16 8 H 0.07 4.36 6.52 -2.91 -0.02 4.34 16 9 C 0.23 11.02 4.28 85.63 0.37 11.39 16 10 N -0.57 -23.10 2.19 -834.79 -1.82 -24.92 16 11 C 0.15 4.46 5.56 85.63 0.48 4.93 16 12 C 0.09 2.40 3.50 42.55 0.15 2.55 16 13 C -0.16 -2.78 7.77 22.36 0.17 -2.61 16 14 C -0.06 -0.83 10.17 22.47 0.23 -0.60 16 15 C -0.16 -2.86 10.11 22.36 0.23 -2.64 16 16 C 0.07 2.17 10.50 84.67 0.89 3.06 16 17 N -0.48 -17.21 6.34 -183.88 -1.17 -18.37 16 18 C 0.56 24.28 6.78 86.55 0.59 24.87 16 19 O -0.57 -29.87 16.17 -4.20 -0.07 -29.94 16 20 C 0.02 0.54 5.68 40.37 0.23 0.77 16 21 C -0.09 -2.67 6.41 22.53 0.14 -2.52 16 22 C -0.10 -1.85 9.65 22.21 0.21 -1.63 16 23 C -0.05 -0.99 10.09 22.45 0.23 -0.76 16 24 C 0.19 5.54 7.80 134.09 1.05 6.59 16 25 N -0.51 -15.09 11.31 -194.28 -2.20 -17.29 16 26 C 0.03 0.93 11.83 83.84 0.99 1.93 16 27 C -0.11 -3.43 11.04 83.36 0.92 -2.51 16 28 N -0.34 -11.34 2.97 -339.78 -1.01 -12.35 16 29 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 30 H 0.02 0.84 7.07 -2.39 -0.02 0.82 16 31 H 0.05 2.11 6.74 -2.39 -0.02 2.09 16 32 H 0.11 2.52 7.61 -2.39 -0.02 2.50 16 33 H 0.11 3.04 7.74 -2.39 -0.02 3.02 16 34 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 35 H 0.18 0.82 8.06 -2.91 -0.02 0.79 16 36 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 37 H 0.14 4.28 8.06 -2.91 -0.02 4.25 16 38 H 0.16 5.10 3.10 -2.92 -0.01 5.09 16 39 H 0.18 2.00 8.06 -2.91 -0.02 1.97 16 40 H 0.19 2.36 8.06 -2.91 -0.02 2.34 16 41 H 0.21 4.02 8.06 -2.91 -0.02 3.99 16 42 H 0.17 5.60 7.84 -2.91 -0.02 5.58 16 Total: -1.00 -84.73 348.26 4.50 -80.23 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 1.02 Total: 19.72 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 7.56 Total: 15.69 kcal Atomic # 7 Polarization: -126.00 SS G_CDS: -5.90 Total: -131.90 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.07 Total: -29.94 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.88 Total: 46.20 kcal Total: -84.73 4.50 -80.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770418708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.156 kcal (2) G-P(sol) polarization free energy of solvation -84.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds