Wall clock time and date at job start Sat Apr 11 2020 04:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86802 * 119.99753 * 2 1 4 4 H 1.48503 * 109.46770 * 239.99586 * 3 2 1 5 5 H 1.48499 * 109.47505 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46733 * 119.99828 * 3 2 1 7 7 C 1.38797 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99740 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99869 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99828 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46906 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00472 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99538 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99665 * 179.72653 * 13 11 10 15 15 H 1.09009 * 109.04772 * 326.28415 * 14 13 11 16 16 C 1.54513 * 109.05796 * 207.36675 * 14 13 11 17 17 C 1.50458 * 108.85404 * 162.26860 * 16 14 13 18 18 C 1.54295 * 113.03767 * 92.15448 * 17 16 14 19 19 C 1.54064 * 112.28326 * 318.29855 * 18 17 16 20 20 N 1.44265 * 111.98584 * 318.91559 * 19 18 17 21 21 C 1.38404 * 111.00443 * 219.31404 * 20 19 18 22 22 N 1.32493 * 119.21794 * 237.74455 * 21 20 19 23 23 C 1.32274 * 120.73914 * 179.71344 * 22 21 20 24 24 C 1.38604 * 119.19719 * 0.54956 * 23 22 21 25 25 C 1.38609 * 118.55836 * 359.72420 * 24 23 22 26 26 N 1.32274 * 119.19654 * 0.02562 * 25 24 23 27 27 C 1.45863 * 109.05744 * 85.27768 * 14 13 11 28 28 H 0.97008 * 120.00004 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46478 * 60.00315 * 10 9 7 30 30 H 1.08993 * 109.47083 * 300.00591 * 10 9 7 31 31 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 32 32 H 1.09007 * 109.57307 * 282.07718 * 16 14 13 33 33 H 1.08998 * 109.57476 * 42.45305 * 16 14 13 34 34 H 1.09000 * 108.77168 * 331.23022 * 17 16 14 35 35 H 1.09004 * 108.67627 * 213.00802 * 17 16 14 36 36 H 1.09001 * 108.91793 * 197.57531 * 18 17 16 37 37 H 1.08997 * 108.91725 * 79.02402 * 18 17 16 38 38 H 1.09006 * 108.97784 * 198.26879 * 19 18 17 39 39 H 1.09005 * 108.97615 * 79.56255 * 19 18 17 40 40 H 1.08001 * 120.40188 * 180.30439 * 23 22 21 41 41 H 1.08005 * 120.71963 * 179.71116 * 24 23 22 42 42 H 1.08001 * 120.39902 * 180.02562 * 25 24 23 43 43 H 1.08999 * 108.78968 * 302.75464 * 27 14 13 44 44 H 1.08993 * 108.78945 * 61.09400 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8441 -6.3430 0.0008 14 6 2.3304 -7.7150 0.0074 15 1 1.4055 -7.7457 0.5836 16 6 3.3710 -8.6401 0.6772 17 6 2.6948 -9.9233 1.0771 18 6 2.7852 -11.0170 -0.0075 19 6 2.5539 -10.4560 -1.4236 20 7 1.4847 -9.4879 -1.4530 21 6 0.7163 -9.6320 -2.5951 22 7 0.5811 -8.6023 -3.4178 23 6 -0.1416 -8.7083 -4.5205 24 6 -0.7699 -9.9107 -4.8042 25 6 -0.6120 -10.9658 -3.9193 26 7 0.1287 -10.7947 -2.8368 27 6 2.0511 -8.1256 -1.3640 28 1 -0.4850 0.8401 -0.0004 29 1 3.1244 -3.7313 0.8906 30 1 3.1245 -3.7313 -0.8893 31 1 3.8009 -6.1835 0.0004 32 1 4.1751 -8.8551 -0.0267 33 1 3.7787 -8.1510 1.5619 34 1 1.6440 -9.7173 1.2808 35 1 3.1620 -10.2945 1.9893 36 1 2.0348 -11.7806 0.1971 37 1 3.7734 -11.4751 0.0341 38 1 2.3060 -11.2785 -2.0946 39 1 3.4716 -9.9813 -1.7711 40 1 -0.2442 -7.8668 -5.1898 41 1 -1.3697 -10.0231 -5.6953 42 1 -1.0879 -11.9161 -4.1113 43 1 1.3444 -7.4221 -1.8042 44 1 2.9786 -8.0947 -1.9356 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102846607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:36:34 Heat of formation + Delta-G solvation = 38.631438 kcal Electronic energy + Delta-G solvation = -26430.623016 eV Core-core repulsion = 22703.171427 eV Total energy + Delta-G solvation = -3727.451589 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.57980 -39.91990 -38.41623 -35.42724 -34.23860 -33.76264 -32.40642 -31.28675 -31.09936 -28.72541 -26.73471 -25.62733 -25.39680 -24.29830 -23.33310 -21.12809 -20.48826 -19.87729 -18.19849 -17.83421 -17.60543 -16.46074 -16.26367 -15.84060 -15.40750 -15.32901 -15.25432 -14.78589 -14.62920 -14.32804 -14.11558 -13.93772 -13.79701 -13.50026 -13.15930 -12.82428 -12.56698 -12.46178 -12.02420 -11.84836 -11.30371 -11.14935 -11.10662 -11.02487 -11.02227 -10.96856 -10.81801 -10.74517 -10.52003 -10.30343 -9.79771 -9.37974 -9.30089 -9.04585 -8.95063 -8.60623 -8.20547 -6.46943 -6.19283 -3.89541 0.74592 0.91933 2.71560 3.12094 3.18469 3.24798 3.29282 3.35694 3.55276 3.77199 3.97785 4.22679 4.38122 4.43837 4.46580 4.62431 4.74727 4.86314 4.93592 4.94792 5.04521 5.14082 5.15606 5.19969 5.24861 5.34729 5.38782 5.54580 5.58330 5.66852 5.78487 5.87126 5.91385 5.93047 5.99582 6.07014 6.13754 6.17195 6.23957 6.45703 6.58527 6.72369 7.04420 7.61313 7.75653 7.94956 8.37167 8.66499 9.25766 10.88042 Molecular weight = 336.14amu Principal moments of inertia in cm(-1) A = 0.014931 B = 0.002651 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.832766 B =10558.591094 C =12018.049900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.513 6.513 13 N -0.734 5.734 14 C 0.150 3.850 15 H 0.094 0.906 16 C -0.125 4.125 17 C -0.112 4.112 18 C -0.107 4.107 19 C 0.062 3.938 20 N -0.444 5.444 21 C 0.497 3.503 22 N -0.545 5.545 23 C 0.177 3.823 24 C -0.265 4.265 25 C 0.171 3.829 26 N -0.532 5.532 27 C 0.048 3.952 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.398 0.602 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.170 0.830 41 H 0.147 0.853 42 H 0.169 0.831 43 H 0.109 0.891 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.682 -25.056 -6.560 26.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.386 6.386 13 N -0.389 5.389 14 C 0.045 3.955 15 H 0.112 0.888 16 C -0.163 4.163 17 C -0.151 4.151 18 C -0.146 4.146 19 C -0.065 4.065 20 N -0.162 5.162 21 C 0.141 3.859 22 N -0.264 5.264 23 C 0.009 3.991 24 C -0.288 4.288 25 C 0.004 3.996 26 N -0.251 5.251 27 C -0.080 4.080 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.232 0.768 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.187 0.813 41 H 0.164 0.836 42 H 0.186 0.814 43 H 0.127 0.873 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.793 -25.246 -5.239 26.225 hybrid contribution 2.172 1.435 -1.408 2.960 sum 6.965 -23.810 -6.647 25.683 Atomic orbital electron populations 1.70014 1.05944 1.27521 1.46840 1.24988 0.95019 0.98994 0.94577 0.86233 0.79238 0.81292 0.78783 1.19963 1.20829 1.19944 1.22832 0.94874 0.91730 1.58964 0.91004 1.85415 1.04909 0.96222 1.96707 1.23530 1.06549 0.95383 1.04890 1.20342 0.86608 0.86282 0.74960 1.90719 1.15306 1.85464 1.47121 1.46054 1.09910 1.04925 1.77989 1.19798 0.98755 0.81166 0.95822 0.88796 1.21692 0.97782 0.95821 1.00985 1.21154 1.02025 0.94100 0.97780 1.21940 1.01558 0.98101 0.92953 1.22082 0.90725 0.94562 0.99141 1.57704 1.22314 1.06755 1.29460 1.20993 0.92172 0.85192 0.87569 1.68442 1.20932 1.32232 1.04812 1.23166 0.87641 0.96709 0.91538 1.22743 1.06025 0.95998 1.04051 1.23073 0.90418 0.98807 0.87321 1.67980 1.11809 1.24441 1.20830 1.21490 1.00273 0.88014 0.98201 0.92156 0.89233 0.89248 0.76768 0.91563 0.90722 0.91052 0.91925 0.91220 0.91550 0.90319 0.92852 0.81339 0.83566 0.81399 0.87305 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.38 13.22 55.49 0.73 -25.65 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -15.37 9.50 30.94 0.29 -15.07 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.11 6.16 36.00 0.22 -2.88 16 11 C 0.53 10.08 7.72 -10.99 -0.08 9.99 16 12 O -0.51 -11.91 15.38 5.55 0.09 -11.83 16 13 N -0.73 -9.99 5.00 -56.34 -0.28 -10.27 16 14 C 0.15 1.91 2.22 -70.51 -0.16 1.75 16 15 H 0.09 1.48 6.96 -51.92 -0.36 1.12 16 16 C -0.12 -1.13 5.07 -27.21 -0.14 -1.27 16 17 C -0.11 -0.98 5.42 -27.32 -0.15 -1.13 16 18 C -0.11 -0.86 6.15 -25.50 -0.16 -1.02 16 19 C 0.06 0.60 5.04 -4.68 -0.02 0.58 16 20 N -0.44 -5.58 4.29 -180.07 -0.77 -6.35 16 21 C 0.50 6.68 7.03 -322.81 -2.27 4.41 16 22 N -0.55 -7.48 8.23 -13.93 -0.11 -7.60 16 23 C 0.18 1.83 11.30 -17.23 -0.19 1.64 16 24 C -0.26 -2.12 10.16 -39.31 -0.40 -2.52 16 25 C 0.17 1.51 11.30 -17.22 -0.19 1.31 16 26 N -0.53 -6.41 9.50 -13.93 -0.13 -6.54 16 27 C 0.05 0.63 3.99 -6.70 -0.03 0.61 16 28 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 30 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 31 H 0.40 4.14 8.61 -40.82 -0.35 3.79 16 32 H 0.07 0.52 7.15 -51.93 -0.37 0.15 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.76 7.38 -51.93 -0.38 0.38 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.78 6.94 -51.93 -0.36 0.42 16 39 H 0.05 0.47 6.51 -51.93 -0.34 0.14 16 40 H 0.17 1.31 8.06 -52.49 -0.42 0.88 16 41 H 0.15 0.69 8.06 -52.48 -0.42 0.26 16 42 H 0.17 0.86 8.06 -52.49 -0.42 0.43 16 43 H 0.11 1.85 6.45 -51.93 -0.34 1.52 16 44 H 0.05 0.62 7.23 -51.93 -0.38 0.24 16 LS Contribution 369.97 15.07 5.58 5.58 Total: -1.00 -36.63 369.97 -11.74 -48.37 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.23 Total: 3.21 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -3.37 Total: -1.59 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.57 Total: -56.40 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.63 -11.74 -48.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102846607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.998 kcal (2) G-P(sol) polarization free energy of solvation -36.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds