Wall clock time and date at job start Sat Apr 11 2020 04:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00150 * 2 1 4 4 H 1.48494 * 109.47230 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46892 * 300.00117 * 3 2 1 6 6 H 1.48503 * 109.46797 * 59.99722 * 3 2 1 7 7 C 1.38945 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00271 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99860 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99634 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00456 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99675 * 179.72687 * 10 9 7 13 13 N 1.46904 * 109.47192 * 180.28082 * 12 10 9 14 14 C 1.47442 * 111.00249 * 69.86951 * 13 12 10 15 15 C 1.54317 * 107.23050 * 123.25886 * 14 13 12 16 16 C 1.55142 * 103.01999 * 22.28722 * 15 14 13 17 17 H 1.08995 * 110.99059 * 82.43539 * 16 15 14 18 18 N 1.46502 * 110.98949 * 206.21458 * 16 15 14 19 19 C 1.34772 * 120.00149 * 273.54401 * 18 16 15 20 20 O 1.21567 * 120.00170 * 0.02562 * 19 18 16 21 21 C 1.47727 * 120.00020 * 180.02562 * 19 18 16 22 22 C 1.40159 * 120.53026 * 179.72627 * 21 19 18 23 23 C 1.38150 * 118.31854 * 179.73255 * 22 21 19 24 24 C 1.38745 * 119.29046 * 0.51805 * 23 22 21 25 25 F 1.35095 * 119.49949 * 179.76266 * 24 23 22 26 26 N 1.32151 * 121.01363 * 359.74208 * 24 23 22 27 27 C 1.31689 * 121.83903 * 0.02562 * 26 24 23 28 28 C 1.47839 * 111.00046 * 190.71824 * 13 12 10 29 29 H 0.97004 * 119.99542 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99881 * 0.02562 * 9 7 2 31 31 H 1.09009 * 109.47352 * 300.27556 * 12 10 9 32 32 H 1.08998 * 109.47585 * 60.27844 * 12 10 9 33 33 H 1.08991 * 109.88826 * 242.66484 * 14 13 12 34 34 H 1.08999 * 109.88858 * 3.85602 * 14 13 12 35 35 H 1.09001 * 110.70756 * 140.66830 * 15 14 13 36 36 H 1.08999 * 110.70626 * 263.90155 * 15 14 13 37 37 H 0.97009 * 119.99538 * 93.54632 * 18 16 15 38 38 H 1.08001 * 120.83377 * 359.97438 * 22 21 19 39 39 H 1.08008 * 120.35596 * 180.28676 * 23 22 21 40 40 H 1.08006 * 119.69871 * 179.97438 * 27 26 24 41 41 H 1.09001 * 110.37459 * 332.45990 * 28 13 12 42 42 H 1.09002 * 110.37976 * 94.79967 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8893 2.3964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2437 -4.8629 0.0068 13 7 2.1982 -5.9795 0.0123 14 6 2.9016 -6.0671 1.3052 15 6 2.6546 -7.4838 1.8648 16 6 2.3009 -8.3040 0.5963 17 1 3.2026 -8.6216 0.0728 18 7 1.4600 -9.4553 0.9333 19 6 2.0283 -10.6168 1.3130 20 8 3.2389 -10.7091 1.3763 21 6 1.1804 -11.7779 1.6523 22 6 1.7598 -12.9928 2.0430 23 6 0.9236 -14.0472 2.3555 24 6 -0.4500 -13.8747 2.2628 25 9 -1.2714 -14.9044 2.5627 26 7 -0.9671 -12.7184 1.8862 27 6 -0.2099 -11.6845 1.5831 28 6 1.5118 -7.2646 -0.2383 29 1 -0.4850 0.8401 -0.0004 30 1 0.3533 -2.3906 -0.0002 31 1 0.6169 -4.9164 0.8970 32 1 0.6171 -4.9250 -0.8829 33 1 3.9696 -5.9076 1.1578 34 1 2.5047 -5.3218 1.9944 35 1 3.5560 -7.8742 2.3372 36 1 1.8207 -7.4809 2.5668 37 1 0.4940 -9.3815 0.8831 38 1 2.8328 -13.1007 2.1021 39 1 1.3348 -14.9968 2.6649 40 1 -0.6694 -10.7556 1.2788 41 1 0.4766 -7.2141 0.0993 42 1 1.5543 -7.5175 -1.2977 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479948621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:35:21 Heat of formation + Delta-G solvation = -59.090985 kcal Electronic energy + Delta-G solvation = -27377.540986 eV Core-core repulsion = 23079.638658 eV Total energy + Delta-G solvation = -4297.902327 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.138 amu Computer time = 5.46 seconds Orbital eigenvalues (eV) -49.64864 -41.17399 -39.83606 -38.81650 -37.52203 -34.82122 -33.85535 -33.37273 -32.14853 -31.27749 -30.61820 -28.63097 -26.63733 -25.05276 -24.52449 -24.09189 -21.75670 -21.27677 -20.79820 -19.11532 -18.90969 -18.28929 -17.96595 -17.78839 -16.71367 -16.53973 -16.03728 -15.70613 -15.60287 -15.24565 -15.07219 -14.53015 -14.43036 -14.12571 -13.96771 -13.78772 -13.69103 -13.59195 -13.38702 -13.26641 -13.12200 -12.36064 -11.95315 -11.75056 -11.53747 -11.48678 -11.28070 -11.05724 -10.76428 -10.75007 -10.66904 -10.34664 -10.22993 -10.19843 -9.76229 -9.51806 -9.40266 -8.48815 -7.99030 -7.94824 -6.42286 -3.82903 -0.15804 0.39909 2.24031 2.55963 2.82626 3.09636 3.16003 3.26686 3.33971 3.72171 3.89564 3.94928 4.04853 4.08898 4.19558 4.32072 4.41303 4.61691 4.63929 4.84125 4.96968 5.11042 5.18369 5.22145 5.23789 5.29305 5.33318 5.53946 5.68055 5.73881 5.80236 5.83960 5.89825 6.01840 6.12383 6.27267 6.42540 6.84204 6.99046 7.14935 7.16738 7.55139 7.71404 8.06070 8.61449 9.18169 9.54108 10.06000 10.75615 Molecular weight = 336.14amu Principal moments of inertia in cm(-1) A = 0.031391 B = 0.001747 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.750813 B =16021.688266 C =16646.746822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.104 0.896 9 N -0.566 5.566 10 C 0.444 3.556 11 O -0.575 6.575 12 C 0.041 3.959 13 N -0.501 5.501 14 C 0.058 3.942 15 C -0.154 4.154 16 C 0.137 3.863 17 H 0.108 0.892 18 N -0.714 5.714 19 C 0.567 3.433 20 O -0.526 6.526 21 C -0.198 4.198 22 C 0.013 3.987 23 C -0.199 4.199 24 C 0.330 3.670 25 F -0.106 7.106 26 N -0.515 5.515 27 C 0.174 3.826 28 C 0.038 3.962 29 H 0.270 0.730 30 H 0.391 0.609 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.399 0.601 38 H 0.161 0.839 39 H 0.158 0.842 40 H 0.171 0.829 41 H 0.050 0.950 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.340 -26.656 4.270 27.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.203 5.203 10 C 0.229 3.771 11 O -0.458 6.458 12 C -0.091 4.091 13 N -0.225 5.225 14 C -0.070 4.070 15 C -0.194 4.194 16 C 0.032 3.968 17 H 0.126 0.874 18 N -0.365 5.365 19 C 0.353 3.647 20 O -0.402 6.402 21 C -0.203 4.203 22 C -0.013 4.013 23 C -0.220 4.220 24 C 0.177 3.823 25 F -0.085 7.085 26 N -0.229 5.229 27 C 0.016 3.984 28 C -0.091 4.091 29 H 0.080 0.920 30 H 0.224 0.776 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.235 0.765 38 H 0.179 0.821 39 H 0.175 0.825 40 H 0.188 0.812 41 H 0.068 0.932 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.334 -26.409 3.878 26.794 hybrid contribution -0.859 0.528 0.744 1.253 sum -3.192 -25.882 4.622 26.484 Atomic orbital electron populations 1.69621 1.05926 1.28009 1.50882 1.25255 0.95638 0.99706 0.97421 0.85805 0.79729 0.81168 0.77681 1.19218 1.20760 1.20813 1.19748 0.93388 0.82188 1.47344 0.87861 1.41867 1.09145 1.04587 1.64749 1.19711 0.88446 0.84475 0.84506 1.90531 1.13604 1.86957 1.54744 1.22102 0.93903 0.91527 1.01545 1.63239 1.26076 1.00810 1.32425 1.22712 1.01293 0.94131 0.88863 1.23256 1.02518 0.96262 0.97351 1.22199 0.94570 0.84174 0.95871 0.87359 1.45845 1.10377 1.11553 1.68748 1.17815 0.87534 0.82131 0.77209 1.90829 1.13774 1.83455 1.52144 1.21072 0.95070 0.96477 1.07697 1.21676 1.01855 0.89464 0.88342 1.21883 0.91719 1.02458 1.05906 1.18432 0.85859 0.83990 0.94018 1.91666 1.73081 1.54284 1.89448 1.67028 1.41738 0.99548 1.14629 1.22755 0.88914 0.95737 0.91021 1.23268 0.96048 0.89095 1.00702 0.91964 0.77554 0.93204 0.89306 0.89487 0.92258 0.90135 0.91369 0.76516 0.82120 0.82467 0.81172 0.93162 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.32 13.05 55.50 0.72 -23.59 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 7 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 9 N -0.57 -14.09 5.29 -10.96 -0.06 -14.14 16 10 C 0.44 10.22 7.43 -10.98 -0.08 10.13 16 11 O -0.58 -15.32 15.12 5.55 0.08 -15.23 16 12 C 0.04 0.69 5.03 -4.97 -0.03 0.66 16 13 N -0.50 -7.76 4.85 -232.69 -1.13 -8.89 16 14 C 0.06 0.88 5.65 -2.84 -0.02 0.86 16 15 C -0.15 -1.78 6.64 -24.91 -0.17 -1.94 16 16 C 0.14 1.41 3.31 -65.79 -0.22 1.19 16 17 H 0.11 1.29 7.73 -51.93 -0.40 0.89 16 18 N -0.71 -5.52 5.18 -52.72 -0.27 -5.80 16 19 C 0.57 5.23 7.78 -12.39 -0.10 5.14 16 20 O -0.53 -6.74 16.16 5.31 0.09 -6.65 16 21 C -0.20 -1.42 5.89 -104.82 -0.62 -2.03 16 22 C 0.01 0.08 9.71 -38.89 -0.38 -0.30 16 23 C -0.20 -1.09 10.07 -39.43 -0.40 -1.48 16 24 C 0.33 2.52 8.41 -17.23 -0.14 2.37 16 25 F -0.11 -0.86 17.29 2.25 0.04 -0.82 16 26 N -0.52 -4.33 10.36 -13.22 -0.14 -4.46 16 27 C 0.17 1.11 10.71 -17.14 -0.18 0.93 16 28 C 0.04 0.40 6.31 -2.30 -0.01 0.39 16 29 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 31 H 0.05 0.75 7.96 -51.92 -0.41 0.34 16 32 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 33 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.06 0.97 7.31 -51.93 -0.38 0.59 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.40 1.92 6.58 -40.82 -0.27 1.65 16 38 H 0.16 0.87 7.73 -52.49 -0.41 0.46 16 39 H 0.16 0.44 8.06 -52.48 -0.42 0.02 16 40 H 0.17 0.58 6.42 -52.48 -0.34 0.24 16 41 H 0.05 0.44 7.67 -51.93 -0.40 0.05 16 42 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 363.73 15.07 5.48 5.48 Total: -1.00 -34.13 363.73 -7.75 -41.88 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -4.97 Total: 8.29 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -2.58 Total: 8.04 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -0.87 Total: -56.89 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: 0.17 Total: -21.89 kcal Atomic # 9 Polarization: -0.86 SS G_CDS: 0.04 Total: -0.82 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.13 -7.75 -41.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479948621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.208 kcal (2) G-P(sol) polarization free energy of solvation -34.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.46 seconds