Wall clock time and date at job start Sat Apr 11 2020 04:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50691 * 109.47443 * 2 1 4 4 N 1.31245 * 124.05703 * 270.18671 * 3 2 1 5 5 N 1.27335 * 120.04098 * 180.36342 * 4 3 2 6 6 S 1.56648 * 109.73904 * 359.69417 * 5 4 3 7 7 C 1.38247 * 124.05612 * 89.99974 * 3 2 1 8 8 C 1.47167 * 128.47712 * 359.97438 * 7 3 2 9 9 O 1.21626 * 119.99788 * 359.69735 * 8 7 3 10 10 N 1.34773 * 120.00250 * 179.70657 * 8 7 3 11 11 C 1.49621 * 126.07375 * 359.96668 * 10 8 7 12 12 C 1.51520 * 102.49598 * 154.35826 * 11 10 8 13 13 H 1.09005 * 111.12246 * 288.13912 * 12 11 10 14 14 C 1.51558 * 123.80326 * 151.80308 * 12 11 10 15 15 C 1.55756 * 102.21477 * 208.19734 * 14 12 11 16 16 C 1.56006 * 105.69904 * 25.06840 * 15 14 12 17 17 H 1.08999 * 110.52500 * 248.47550 * 16 15 14 18 18 N 1.46490 * 110.53019 * 125.86278 * 16 15 14 19 19 C 1.36935 * 120.00121 * 88.33739 * 18 16 15 20 20 H 1.07997 * 120.00139 * 0.02562 * 19 18 16 21 21 C 1.38816 * 120.00401 * 180.02562 * 19 18 16 22 22 N 1.31624 * 119.99569 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00172 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47055 * 180.02562 * 23 21 19 25 25 H 1.48505 * 109.46653 * 299.99639 * 23 21 19 26 26 H 1.48495 * 109.47483 * 60.00002 * 23 21 19 27 27 C 1.49704 * 104.10971 * 7.16545 * 16 15 14 28 28 H 1.08999 * 108.54988 * 78.05376 * 27 16 15 29 29 C 1.48095 * 126.28841 * 179.00939 * 10 8 7 30 30 H 1.09001 * 109.47587 * 59.99674 * 1 2 3 31 31 H 1.09006 * 109.47542 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47344 * 300.00013 * 1 2 3 33 33 H 1.09009 * 109.47026 * 239.99597 * 2 1 3 34 34 H 1.09009 * 109.47007 * 120.00518 * 2 1 3 35 35 H 1.09002 * 110.80196 * 36.10815 * 11 10 8 36 36 H 1.09000 * 110.97252 * 272.68814 * 11 10 8 37 37 H 1.09009 * 110.95543 * 325.94609 * 14 12 11 38 38 H 1.08996 * 110.96565 * 89.67857 * 14 12 11 39 39 H 1.08997 * 109.99534 * 266.13227 * 15 14 12 40 40 H 1.08999 * 110.45500 * 144.24076 * 15 14 12 41 41 H 0.97000 * 120.00577 * 268.34339 * 18 16 15 42 42 H 0.97001 * 119.99885 * 359.97438 * 22 21 19 43 43 H 1.09002 * 109.84151 * 54.28313 * 29 10 8 44 44 H 1.09006 * 110.37726 * 292.27251 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2740 2.1148 -1.0873 5 7 2.7043 3.3099 -0.9982 6 16 2.8502 3.7086 0.5097 7 6 2.2904 2.1506 1.1454 8 6 2.1427 1.7343 2.5492 9 8 1.7411 0.6170 2.8131 10 7 2.4521 2.5912 3.5423 11 6 2.9556 3.9901 3.3741 12 6 2.5155 4.6542 4.6629 13 1 1.4360 4.8049 4.6785 14 6 3.2393 5.8243 5.2985 15 6 2.9082 5.6357 6.8087 16 6 2.6114 4.1148 6.9891 17 1 1.5574 3.9554 7.2166 18 7 3.4547 3.5485 8.0446 19 6 3.0306 3.5724 9.3465 20 1 2.0743 4.0084 9.5950 21 6 3.8298 3.0363 10.3468 22 7 4.9956 2.5054 10.0441 23 14 3.2510 3.0683 12.1226 24 1 4.2792 2.4391 12.9898 25 1 3.0383 4.4750 12.5485 26 1 1.9756 2.3169 12.2412 27 6 2.9583 3.5153 5.6619 28 1 4.0424 3.4221 5.5962 29 6 2.3373 2.3275 4.9951 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5140 0.8900 35 1 2.4888 4.4686 2.5131 36 1 4.0416 4.0054 3.2819 37 1 4.3145 5.7541 5.1328 38 1 2.8502 6.7721 4.9267 39 1 2.0301 6.2244 7.0740 40 1 3.7584 5.9287 7.4246 41 1 4.3135 3.1567 7.8216 42 1 5.2960 2.4885 9.1219 43 1 2.8838 1.4196 5.2506 44 1 1.2899 2.2350 5.2825 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026309821.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:37:15 Heat of formation + Delta-G solvation = 66.830178 kcal Electronic energy + Delta-G solvation = -26874.976660 eV Core-core repulsion = 23148.747860 eV Total energy + Delta-G solvation = -3726.228800 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.31408 -40.80966 -38.81045 -35.73266 -34.64285 -33.81664 -31.30974 -30.96847 -29.65996 -28.62973 -27.64673 -25.50168 -24.33124 -23.64986 -23.11026 -21.96581 -20.46922 -19.59196 -19.44708 -18.75040 -17.48700 -17.17554 -16.76705 -16.23893 -15.60509 -15.14664 -15.08155 -14.83729 -14.45193 -14.24980 -13.88757 -13.67372 -13.59267 -13.51442 -12.83922 -12.80881 -12.71189 -12.41887 -12.15137 -11.74100 -11.71377 -11.62050 -11.25588 -11.21943 -10.84385 -10.73763 -10.62915 -10.49403 -10.29986 -10.19476 -10.12522 -10.05364 -10.01421 -9.90057 -9.21447 -8.98412 -8.94987 -7.12283 -6.15987 -3.17343 -0.57789 0.48013 1.16086 1.64349 2.44663 2.70527 3.48705 3.51579 3.54280 3.69224 3.79798 4.09943 4.24719 4.54884 4.68156 4.74751 4.83656 4.97064 5.01504 5.02528 5.05029 5.16657 5.36531 5.46814 5.48800 5.51663 5.65186 5.65827 5.71114 5.72908 5.80928 5.84482 5.91396 5.94789 5.98294 6.11608 6.14465 6.27478 6.41994 6.62030 6.87078 7.08481 7.36149 7.72572 7.75156 8.69206 9.14395 10.00904 10.14607 11.31971 Molecular weight = 336.14amu Principal moments of inertia in cm(-1) A = 0.020398 B = 0.002715 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.368761 B =10311.495534 C =11233.283685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.047 4.047 3 C 0.102 3.898 4 N -0.248 5.248 5 N -0.270 5.270 6 S 0.422 5.578 7 C -0.285 4.285 8 C 0.615 3.385 9 O -0.512 6.512 10 N -0.614 5.614 11 C 0.105 3.895 12 C -0.124 4.124 13 H 0.091 0.909 14 C -0.100 4.100 15 C -0.143 4.143 16 C 0.205 3.795 17 H 0.057 0.943 18 N -0.731 5.731 19 C -0.334 4.334 20 H 0.065 0.935 21 C -0.043 4.043 22 N -0.942 5.942 23 Si 1.078 2.922 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.295 1.295 27 C -0.121 4.121 28 H 0.077 0.923 29 C 0.136 3.864 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.367 0.633 42 H 0.255 0.745 43 H 0.080 0.920 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.920 3.469 -20.145 21.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.088 4.088 3 C -0.045 4.045 4 N -0.114 5.114 5 N -0.249 5.249 6 S 0.560 5.440 7 C -0.425 4.425 8 C 0.400 3.600 9 O -0.389 6.389 10 N -0.348 5.348 11 C -0.018 4.018 12 C -0.144 4.144 13 H 0.109 0.891 14 C -0.138 4.138 15 C -0.184 4.184 16 C 0.094 3.906 17 H 0.075 0.925 18 N -0.373 5.373 19 C -0.464 4.464 20 H 0.083 0.917 21 C -0.241 4.241 22 N -0.587 5.587 23 Si 0.909 3.091 24 H -0.210 1.210 25 H -0.223 1.223 26 H -0.222 1.222 27 C -0.141 4.141 28 H 0.095 0.905 29 C 0.016 3.984 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.125 0.875 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.201 0.799 42 H 0.066 0.934 43 H 0.098 0.902 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.391 3.977 -19.578 20.692 hybrid contribution -0.522 -0.656 -1.177 1.445 sum -5.913 3.321 -20.755 21.835 Atomic orbital electron populations 1.21663 0.93294 1.02783 1.02152 1.20311 0.96996 0.86386 1.05080 1.22987 0.96689 0.99669 0.85174 1.70702 1.13637 0.99098 1.27984 1.78742 1.17792 1.10548 1.17847 1.82859 1.46747 1.14546 0.99879 1.27710 1.14803 1.00211 0.99820 1.15984 0.78424 0.84239 0.81322 1.90837 1.46287 1.19135 1.82636 1.49383 1.64576 1.13980 1.06910 1.22058 0.99971 0.81419 0.98355 1.22548 1.01579 0.97138 0.93123 0.89074 1.21771 0.99741 0.95919 0.96357 1.23682 1.01817 0.99242 0.93652 1.19864 0.95471 0.90156 0.85116 0.92478 1.42496 1.20328 1.71024 1.03436 1.20025 1.04194 1.37499 0.84726 0.91678 1.25763 0.95686 0.98419 1.04189 1.70899 1.20248 1.47355 1.20213 0.83263 0.74956 0.75794 0.75084 1.21047 1.22250 1.22214 1.22136 1.01603 0.93289 0.97032 0.90466 1.20838 1.01957 0.98743 0.76905 0.92584 0.91170 0.92191 0.89426 0.87537 0.90915 0.89631 0.91425 0.91762 0.92448 0.90644 0.79904 0.93397 0.90180 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.89 37.15 0.37 -0.90 16 2 C -0.05 -0.46 5.94 -27.89 -0.17 -0.63 16 3 C 0.10 1.18 6.25 -82.84 -0.52 0.66 16 4 N -0.25 -3.07 11.54 33.42 0.39 -2.68 16 5 N -0.27 -3.15 12.51 60.35 0.75 -2.39 16 6 S 0.42 3.86 19.61 -107.50 -2.11 1.75 16 7 C -0.28 -3.26 6.67 -35.96 -0.24 -3.50 16 8 C 0.61 8.12 7.86 -12.64 -0.10 8.02 16 9 O -0.51 -8.05 15.26 5.25 0.08 -7.97 16 10 N -0.61 -7.51 3.40 -173.95 -0.59 -8.10 16 11 C 0.11 1.01 5.59 -3.05 -0.02 0.99 16 12 C -0.12 -1.34 3.11 -89.45 -0.28 -1.62 16 13 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 14 C -0.10 -1.10 6.59 -25.99 -0.17 -1.27 16 15 C -0.14 -2.16 6.73 -23.65 -0.16 -2.32 16 16 C 0.21 3.59 3.43 -67.96 -0.23 3.36 16 17 H 0.06 1.05 8.10 -51.93 -0.42 0.63 16 18 N -0.73 -16.82 5.11 -53.45 -0.27 -17.10 16 19 C -0.33 -8.86 9.97 -15.06 -0.15 -9.01 16 20 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 21 C -0.04 -1.20 5.50 -17.43 -0.10 -1.29 16 22 N -0.94 -28.21 13.70 55.49 0.76 -27.45 16 23 Si 1.08 25.14 29.92 -169.99 -5.09 20.06 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 25 H -0.30 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 27 C -0.12 -1.70 2.24 -91.23 -0.20 -1.90 16 28 H 0.08 1.15 7.76 -51.93 -0.40 0.74 16 29 C 0.14 1.90 6.71 -4.79 -0.03 1.87 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 34 H 0.11 1.16 6.48 -51.92 -0.34 0.82 16 35 H 0.07 0.57 5.18 -34.36 -0.18 0.39 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 1.33 7.98 -51.93 -0.41 0.91 16 41 H 0.37 8.80 6.48 -40.82 -0.26 8.53 16 42 H 0.25 7.47 6.77 -40.82 -0.28 7.19 16 43 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 365.01 15.07 5.50 5.50 Total: -1.00 -31.59 365.01 -8.73 -40.32 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -6.15 Total: 5.61 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -2.00 Total: -7.54 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: 1.04 Total: -57.73 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.08 Total: -7.97 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.09 Total: 20.06 kcal Atomic # 16 Polarization: 3.86 SS G_CDS: -2.11 Total: 1.75 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.59 -8.73 -40.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026309821.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.147 kcal (2) G-P(sol) polarization free energy of solvation -31.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds