Wall clock time and date at job start Sat Apr 11 2020 04:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31789 * 119.08283 * 2 1 4 4 C 1.32550 * 121.01597 * 179.97438 * 3 2 1 5 5 C 1.38119 * 119.19795 * 0.02562 * 4 3 2 6 6 C 1.39635 * 118.33029 * 359.97438 * 5 4 3 7 7 N 1.38538 * 120.52690 * 179.97438 * 6 5 4 8 8 C 1.46509 * 119.99486 * 190.35161 * 7 6 5 9 9 C 1.46494 * 120.00321 * 10.35639 * 7 6 5 10 10 H 1.08997 * 110.88734 * 9.41205 * 9 7 6 11 11 C 1.55156 * 111.00455 * 133.33832 * 9 7 6 12 12 C 1.54340 * 103.01950 * 153.38175 * 11 9 7 13 13 N 1.47026 * 107.26552 * 338.13648 * 12 11 9 14 14 C 1.34774 * 125.64641 * 178.84879 * 13 12 11 15 15 O 1.21280 * 119.99488 * 179.69344 * 14 13 12 16 16 C 1.50700 * 120.00125 * 359.69561 * 14 13 12 17 17 S 1.81002 * 109.47074 * 179.97438 * 16 14 13 18 18 C 1.76200 * 100.00033 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99975 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00195 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99611 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99889 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47170 * 60.00560 * 22 20 18 24 24 H 1.48507 * 109.46850 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47257 * 300.00062 * 22 20 18 26 26 C 1.47422 * 108.69875 * 358.59066 * 13 12 11 27 27 N 1.31748 * 119.08879 * 180.25976 * 2 1 3 28 28 H 1.08996 * 109.47637 * 90.00318 * 1 2 3 29 29 H 1.09005 * 109.47042 * 210.00227 * 1 2 3 30 30 H 1.08996 * 109.47227 * 329.99535 * 1 2 3 31 31 H 1.07995 * 120.40224 * 179.97438 * 4 3 2 32 32 H 1.08001 * 120.83553 * 179.97438 * 5 4 3 33 33 H 1.08995 * 109.47046 * 270.00102 * 8 7 6 34 34 H 1.09002 * 109.46756 * 30.00287 * 8 7 6 35 35 H 1.08995 * 109.46742 * 150.00247 * 8 7 6 36 36 H 1.09005 * 110.72251 * 271.93618 * 11 9 7 37 37 H 1.08996 * 110.72050 * 35.03546 * 11 9 7 38 38 H 1.08999 * 109.99045 * 218.66452 * 12 11 9 39 39 H 1.09000 * 109.78121 * 97.49737 * 12 11 9 40 40 H 1.08998 * 109.47462 * 300.00081 * 16 14 13 41 41 H 1.09003 * 109.47171 * 59.99826 * 16 14 13 42 42 H 0.97002 * 119.99721 * 179.97438 * 21 20 18 43 43 H 1.09000 * 110.36470 * 143.19394 * 26 13 12 44 44 H 1.09000 * 110.36508 * 265.51019 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1475 1.1517 0.0000 4 6 3.4723 1.1964 0.0005 5 6 4.1863 0.0142 0.0005 6 6 3.4768 -1.1885 0.0005 7 7 4.1471 -2.4009 0.0000 8 6 3.4090 -3.6458 -0.2280 9 6 5.5938 -2.4383 0.2275 10 1 5.9630 -1.4623 0.5422 11 6 5.9662 -3.5343 1.2606 12 6 7.4147 -3.8997 0.8730 13 7 7.6063 -3.4974 -0.5281 14 6 8.7473 -3.6272 -1.2336 15 8 8.7896 -3.2644 -2.3901 16 6 9.9703 -4.2231 -0.5854 17 16 11.3283 -4.2625 -1.7815 18 6 12.5911 -4.9844 -0.7869 19 1 12.3836 -5.2528 0.2384 20 6 13.8521 -5.2089 -1.3215 21 7 14.1048 -4.8822 -2.5713 22 14 15.1906 -5.9748 -0.2673 23 1 14.7515 -7.3170 0.1921 24 1 16.4351 -6.1073 -1.0667 25 1 15.4493 -5.1085 0.9107 26 6 6.3418 -2.9342 -1.0352 27 7 2.1475 -1.1513 -0.0052 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 3.9871 2.1458 0.0001 32 1 5.2663 0.0197 0.0005 33 1 3.0647 -4.0440 0.7264 34 1 2.5506 -3.4468 -0.8696 35 1 4.0625 -4.3725 -0.7104 36 1 5.9243 -3.1382 2.2753 37 1 5.3108 -4.3992 1.1585 38 1 7.5678 -4.9742 0.9744 39 1 8.1146 -3.3616 1.5123 40 1 10.2590 -3.6162 0.2727 41 1 9.7483 -5.2377 -0.2547 42 1 14.9862 -5.0388 -2.9448 43 1 6.5409 -2.1014 -1.7096 44 1 5.7603 -3.7038 -1.5428 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095106901.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:38:40 Heat of formation + Delta-G solvation = 33.212599 kcal Electronic energy + Delta-G solvation = -25757.208005 eV Core-core repulsion = 22029.521438 eV Total energy + Delta-G solvation = -3727.686568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.33433 -40.07027 -38.17536 -36.13546 -33.67748 -32.72913 -32.46400 -31.02497 -29.85154 -29.16883 -28.12583 -26.87516 -25.52586 -23.87034 -23.33444 -22.74136 -20.46502 -19.47928 -18.24354 -17.94398 -17.67921 -16.69225 -16.28601 -15.78822 -15.52564 -15.15517 -15.02477 -14.83379 -14.53998 -14.35551 -14.21383 -13.87366 -13.67814 -13.43215 -13.09396 -12.90232 -12.72130 -12.69411 -12.58710 -12.47454 -12.09264 -12.00541 -11.80281 -11.26402 -11.21220 -11.07927 -11.06731 -10.84007 -10.80584 -10.02516 -9.86768 -9.53173 -9.45460 -9.09346 -8.68945 -8.28825 -8.28561 -6.54918 -6.24937 -3.96340 0.76449 1.07713 2.18206 2.87709 2.96605 3.20824 3.22962 3.26614 3.54310 3.56107 3.77621 3.98631 4.07685 4.16753 4.20391 4.36928 4.43906 4.76873 4.82218 4.90843 4.95113 4.99886 5.10165 5.10828 5.16949 5.18511 5.24069 5.31102 5.34259 5.41128 5.45582 5.52557 5.57188 5.60136 5.63087 5.69018 5.85128 6.05810 6.07795 6.19610 6.34066 6.82914 7.04054 7.51506 7.55939 8.00707 8.31387 8.44229 9.20120 10.82418 Molecular weight = 336.14amu Principal moments of inertia in cm(-1) A = 0.031217 B = 0.001970 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.739702 B =14209.976478 C =14456.813331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.356 3.644 3 N -0.564 5.564 4 C 0.179 3.821 5 C -0.298 4.298 6 C 0.443 3.557 7 N -0.588 5.588 8 C 0.095 3.905 9 C 0.137 3.863 10 H 0.110 0.890 11 C -0.140 4.140 12 C 0.104 3.896 13 N -0.626 5.626 14 C 0.550 3.450 15 O -0.512 6.512 16 C -0.147 4.147 17 S -0.060 6.060 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.274 1.274 26 C 0.098 3.902 27 N -0.575 5.575 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.166 0.834 32 H 0.143 0.857 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.269 0.731 43 H 0.083 0.917 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.265 6.455 10.112 27.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.088 3.912 3 N -0.283 5.283 4 C 0.018 3.982 5 C -0.326 4.326 6 C 0.200 3.800 7 N -0.300 5.300 8 C -0.047 4.047 9 C 0.031 3.969 10 H 0.128 0.872 11 C -0.179 4.179 12 C -0.020 4.020 13 N -0.365 5.365 14 C 0.339 3.661 15 O -0.385 6.385 16 C -0.297 4.297 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.027 4.027 27 N -0.299 5.299 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.183 0.817 32 H 0.161 0.839 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.102 0.898 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -25.850 6.813 8.173 27.954 hybrid contribution 1.898 -1.040 2.060 2.988 sum -23.951 5.773 10.233 26.678 Atomic orbital electron populations 1.20547 0.85933 1.03966 1.03793 1.22949 0.97657 0.82643 0.87968 1.68272 1.10015 1.29793 1.20256 1.22900 0.89407 0.97968 0.87953 1.22263 1.02471 0.93037 1.14780 1.18451 0.88406 0.86063 0.87044 1.46171 1.05937 1.03689 1.74198 1.21642 0.96800 0.84835 1.01460 1.22301 0.78446 1.00811 0.95294 0.87192 1.23025 0.96123 0.99130 0.99620 1.21986 0.96080 1.00999 0.82913 1.48402 1.10835 1.64220 1.13006 1.20073 0.82308 0.77830 0.85915 1.90724 1.83057 1.48205 1.16561 1.23508 0.97892 1.03038 1.05274 1.85424 1.01263 1.81836 1.14806 1.22809 0.97848 1.47648 1.00164 0.90950 1.24994 0.97906 0.95290 0.95361 1.70007 1.22604 1.44694 1.12912 0.86219 0.79962 0.79534 0.79755 1.19929 1.20779 1.19922 1.22436 0.85048 0.99247 0.95951 1.67769 1.07472 1.31279 1.23426 0.89680 0.89837 0.89627 0.81693 0.83913 0.92703 0.90341 0.91074 0.89310 0.89650 0.90687 0.90727 0.89179 0.89217 0.92084 0.89828 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.32 36.00 0.37 -0.18 16 2 C 0.36 3.63 7.64 -157.24 -1.20 2.43 16 3 N -0.56 -5.99 10.33 -10.81 -0.11 -6.11 16 4 C 0.18 1.62 11.29 -17.29 -0.20 1.43 16 5 C -0.30 -2.74 9.29 -39.10 -0.36 -3.10 16 6 C 0.44 4.52 7.34 -154.78 -1.14 3.39 16 7 N -0.59 -5.11 3.01 -171.45 -0.52 -5.63 16 8 C 0.09 0.70 8.87 59.85 0.53 1.23 16 9 C 0.14 1.13 3.26 -65.79 -0.21 0.91 16 10 H 0.11 0.86 5.81 -51.93 -0.30 0.56 16 11 C -0.14 -0.97 6.46 -24.89 -0.16 -1.13 16 12 C 0.10 0.96 6.49 -3.05 -0.02 0.95 16 13 N -0.63 -8.33 3.33 -170.51 -0.57 -8.89 16 14 C 0.55 10.20 7.87 -10.99 -0.09 10.11 16 15 O -0.51 -11.61 16.12 5.56 0.09 -11.52 16 16 C -0.15 -2.90 5.35 36.01 0.19 -2.71 16 17 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 18 C -0.54 -15.06 9.50 30.94 0.29 -14.76 16 19 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -25.90 13.22 55.49 0.73 -25.17 16 22 Si 0.92 21.12 29.55 -169.99 -5.02 16.09 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 C 0.10 1.10 6.49 -2.53 -0.02 1.08 16 27 N -0.57 -6.21 9.30 -9.97 -0.09 -6.30 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.17 1.00 8.06 -52.49 -0.42 0.57 16 32 H 0.14 1.09 6.17 -52.49 -0.32 0.77 16 33 H 0.05 0.36 8.11 -51.93 -0.42 -0.06 16 34 H 0.08 0.63 7.58 -51.93 -0.39 0.24 16 35 H 0.07 0.47 6.61 -51.93 -0.34 0.13 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.54 6.74 -51.93 -0.35 0.19 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 41 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 42 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.08 1.06 8.04 -51.93 -0.42 0.65 16 44 H 0.07 0.78 6.73 -51.93 -0.35 0.43 16 LS Contribution 377.50 15.07 5.69 5.69 Total: -1.00 -35.81 377.50 -10.36 -46.17 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -6.25 Total: -2.15 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -2.10 Total: 1.63 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: -0.55 Total: -52.10 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.81 -10.36 -46.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095106901.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.386 kcal (2) G-P(sol) polarization free energy of solvation -35.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds