Wall clock time and date at job start Sat Apr 11 2020 04:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31789 * 119.08283 * 2 1 4 4 C 1.32550 * 121.01597 * 179.97438 * 3 2 1 5 5 C 1.38119 * 119.19795 * 0.02562 * 4 3 2 6 6 C 1.39635 * 118.33029 * 359.97438 * 5 4 3 7 7 N 1.38538 * 120.52690 * 179.97438 * 6 5 4 8 8 C 1.46509 * 119.99486 * 190.35161 * 7 6 5 9 9 C 1.46494 * 120.00321 * 10.35639 * 7 6 5 10 10 H 1.08997 * 110.88734 * 9.41205 * 9 7 6 11 11 C 1.55156 * 111.00455 * 133.33832 * 9 7 6 12 12 C 1.54340 * 103.01950 * 153.38175 * 11 9 7 13 13 N 1.47026 * 107.26552 * 338.13648 * 12 11 9 14 14 C 1.34774 * 125.64641 * 178.84879 * 13 12 11 15 15 O 1.21280 * 119.99488 * 179.69344 * 14 13 12 16 16 C 1.50700 * 120.00125 * 359.69561 * 14 13 12 17 17 S 1.81002 * 109.47074 * 179.97438 * 16 14 13 18 18 C 1.76200 * 100.00033 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99975 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00195 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99611 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99889 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47170 * 60.00560 * 22 20 18 24 24 H 1.48507 * 109.46850 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47257 * 300.00062 * 22 20 18 26 26 C 1.47422 * 108.69875 * 358.59066 * 13 12 11 27 27 N 1.31748 * 119.08879 * 180.25976 * 2 1 3 28 28 H 1.08996 * 109.47637 * 90.00318 * 1 2 3 29 29 H 1.09005 * 109.47042 * 210.00227 * 1 2 3 30 30 H 1.08996 * 109.47227 * 329.99535 * 1 2 3 31 31 H 1.07995 * 120.40224 * 179.97438 * 4 3 2 32 32 H 1.08001 * 120.83553 * 179.97438 * 5 4 3 33 33 H 1.08995 * 109.47046 * 270.00102 * 8 7 6 34 34 H 1.09002 * 109.46756 * 30.00287 * 8 7 6 35 35 H 1.08995 * 109.46742 * 150.00247 * 8 7 6 36 36 H 1.09005 * 110.72251 * 271.93618 * 11 9 7 37 37 H 1.08996 * 110.72050 * 35.03546 * 11 9 7 38 38 H 1.08999 * 109.99045 * 218.66452 * 12 11 9 39 39 H 1.09000 * 109.78121 * 97.49737 * 12 11 9 40 40 H 1.08998 * 109.47462 * 300.00081 * 16 14 13 41 41 H 1.09003 * 109.47171 * 59.99826 * 16 14 13 42 42 H 0.97002 * 119.99721 * 179.97438 * 21 20 18 43 43 H 1.09000 * 110.36470 * 143.19394 * 26 13 12 44 44 H 1.09000 * 110.36508 * 265.51019 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1475 1.1517 0.0000 4 6 3.4723 1.1964 0.0005 5 6 4.1863 0.0142 0.0005 6 6 3.4768 -1.1885 0.0005 7 7 4.1471 -2.4009 0.0000 8 6 3.4090 -3.6458 -0.2280 9 6 5.5938 -2.4383 0.2275 10 1 5.9630 -1.4623 0.5422 11 6 5.9662 -3.5343 1.2606 12 6 7.4147 -3.8997 0.8730 13 7 7.6063 -3.4974 -0.5281 14 6 8.7473 -3.6272 -1.2336 15 8 8.7896 -3.2644 -2.3901 16 6 9.9703 -4.2231 -0.5854 17 16 11.3283 -4.2625 -1.7815 18 6 12.5911 -4.9844 -0.7869 19 1 12.3836 -5.2528 0.2384 20 6 13.8521 -5.2089 -1.3215 21 7 14.1048 -4.8822 -2.5713 22 14 15.1906 -5.9748 -0.2673 23 1 14.7515 -7.3170 0.1921 24 1 16.4351 -6.1073 -1.0667 25 1 15.4493 -5.1085 0.9107 26 6 6.3418 -2.9342 -1.0352 27 7 2.1475 -1.1513 -0.0052 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 3.9871 2.1458 0.0001 32 1 5.2663 0.0197 0.0005 33 1 3.0647 -4.0440 0.7264 34 1 2.5506 -3.4468 -0.8696 35 1 4.0625 -4.3725 -0.7104 36 1 5.9243 -3.1382 2.2753 37 1 5.3108 -4.3992 1.1585 38 1 7.5678 -4.9742 0.9744 39 1 8.1146 -3.3616 1.5123 40 1 10.2590 -3.6162 0.2727 41 1 9.7483 -5.2377 -0.2547 42 1 14.9862 -5.0388 -2.9448 43 1 6.5409 -2.1014 -1.7096 44 1 5.7603 -3.7038 -1.5428 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095106901.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:38:39 Heat of formation + Delta-G solvation = 10.485462 kcal Electronic energy + Delta-G solvation = -25758.193528 eV Core-core repulsion = 22029.521438 eV Total energy + Delta-G solvation = -3728.672090 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.136 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -42.04690 -41.13769 -39.27239 -37.07272 -34.58799 -34.37806 -33.52661 -32.05283 -30.88632 -29.92876 -29.04580 -27.72127 -27.51121 -24.84772 -24.01013 -23.47650 -21.18482 -20.78572 -19.60734 -18.94191 -18.57786 -18.07605 -17.20519 -16.88289 -16.70729 -16.38465 -16.15948 -16.11032 -15.63052 -15.38470 -15.09450 -14.89158 -14.59851 -14.43628 -14.10093 -14.07297 -13.77135 -13.47341 -13.40461 -13.20089 -13.16309 -13.07136 -12.86629 -12.76957 -12.63940 -12.61350 -11.94344 -11.92228 -11.75686 -11.52191 -11.12880 -11.04988 -10.70571 -10.28962 -10.19048 -9.79907 -8.99088 -8.68593 -8.34687 -6.13567 0.06806 0.35583 1.17856 1.39738 1.44203 1.50108 1.53039 1.63772 2.12820 2.27251 2.84728 2.99553 3.15759 3.19166 3.34055 3.40618 3.48176 3.69417 3.77927 3.86821 4.07791 4.15313 4.25013 4.29106 4.34949 4.44325 4.49084 4.49922 4.55383 4.63191 4.70193 4.74691 4.76461 4.83540 4.88492 4.96298 5.06235 5.08512 5.22805 5.41456 5.45037 5.64177 6.13298 6.19344 6.29349 6.34662 7.05390 7.06526 7.29500 8.74247 Molecular weight = 336.14amu Principal moments of inertia in cm(-1) A = 0.031217 B = 0.001970 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.739702 B =14209.976478 C =14456.813331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.341 3.659 3 N -0.583 5.583 4 C 0.172 3.828 5 C -0.304 4.304 6 C 0.428 3.572 7 N -0.586 5.586 8 C 0.095 3.905 9 C 0.147 3.853 10 H 0.118 0.882 11 C -0.125 4.125 12 C 0.094 3.906 13 N -0.615 5.615 14 C 0.549 3.451 15 O -0.566 6.566 16 C -0.119 4.119 17 S -0.153 6.153 18 C -0.546 4.546 19 H 0.085 0.915 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.261 1.261 24 H -0.280 1.280 25 H -0.261 1.261 26 C 0.095 3.905 27 N -0.589 5.589 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.191 0.809 32 H 0.156 0.844 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.271 0.729 43 H 0.063 0.937 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.101 5.863 13.129 29.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.073 3.927 3 N -0.303 5.303 4 C 0.011 3.989 5 C -0.331 4.331 6 C 0.185 3.815 7 N -0.298 5.298 8 C -0.047 4.047 9 C 0.042 3.958 10 H 0.136 0.864 11 C -0.164 4.164 12 C -0.028 4.028 13 N -0.350 5.350 14 C 0.337 3.663 15 O -0.445 6.445 16 C -0.270 4.270 17 S 0.074 5.926 18 C -0.693 4.693 19 H 0.103 0.897 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.186 1.186 24 H -0.205 1.205 25 H -0.186 1.186 26 C -0.029 4.029 27 N -0.314 5.314 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.208 0.792 32 H 0.173 0.827 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.131 0.869 37 H 0.115 0.885 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -26.742 6.215 11.245 29.669 hybrid contribution 1.997 -0.816 1.138 2.439 sum -24.745 5.399 12.383 28.192 Atomic orbital electron populations 1.20631 0.83962 1.04749 1.04556 1.23577 0.99051 0.82514 0.87575 1.68338 1.10823 1.30126 1.21037 1.23383 0.89209 0.99134 0.87146 1.22444 1.03132 0.92851 1.14713 1.18731 0.88635 0.86826 0.87302 1.46218 1.05912 1.03699 1.73970 1.21698 0.96565 0.84418 1.02004 1.22202 0.77995 1.01729 0.93877 0.86421 1.23007 0.94334 0.98947 1.00091 1.22361 0.98166 1.01966 0.80312 1.48255 1.09822 1.62451 1.14483 1.19802 0.83336 0.77768 0.85399 1.90704 1.84106 1.50829 1.18820 1.23297 0.95601 1.04783 1.03320 1.85632 1.05225 1.82291 1.19467 1.23159 0.98183 1.47444 1.00541 0.89726 1.26139 1.00699 0.95628 0.96705 1.70182 1.23300 1.46189 1.15112 0.85003 0.76197 0.78942 0.77851 1.18596 1.20529 1.18557 1.22557 0.84317 0.98645 0.97375 1.67816 1.07855 1.31627 1.24122 0.88810 0.89038 0.88805 0.79208 0.82666 0.91475 0.91321 0.90337 0.86950 0.88472 0.89532 0.89401 0.87145 0.87304 0.92008 0.91854 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.32 71.23 0.73 -0.25 16 2 C 0.34 6.67 7.64 138.76 1.06 7.73 16 3 N -0.58 -11.91 10.33 -188.12 -1.94 -13.85 16 4 C 0.17 2.93 11.29 84.56 0.95 3.88 16 5 C -0.30 -5.20 9.29 22.58 0.21 -4.99 16 6 C 0.43 8.19 7.34 133.17 0.98 9.17 16 7 N -0.59 -9.09 3.01 -696.35 -2.10 -11.19 16 8 C 0.10 1.22 8.87 127.77 1.13 2.36 16 9 C 0.15 2.08 3.26 46.38 0.15 2.23 16 10 H 0.12 1.53 5.81 -2.39 -0.01 1.51 16 11 C -0.13 -1.25 6.46 31.79 0.21 -1.04 16 12 C 0.09 1.43 6.49 86.73 0.56 1.99 16 13 N -0.61 -15.39 3.33 -811.77 -2.70 -18.09 16 14 C 0.55 20.24 7.87 87.66 0.69 20.93 16 15 O -0.57 -26.57 16.12 -3.03 -0.05 -26.62 16 16 C -0.12 -4.62 5.35 71.24 0.38 -4.23 16 17 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 18 C -0.55 -30.65 9.50 67.95 0.65 -30.00 16 19 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 20 C 0.01 0.74 5.49 84.86 0.47 1.20 16 21 N -0.91 -55.63 13.22 21.65 0.29 -55.35 16 22 Si 1.00 42.86 29.55 68.60 2.03 44.89 16 23 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 24 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 26 C 0.10 2.04 6.49 86.85 0.56 2.60 16 27 N -0.59 -12.16 9.30 -185.44 -1.72 -13.88 16 28 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.19 2.00 8.06 -2.91 -0.02 1.98 16 32 H 0.16 2.13 6.17 -2.91 -0.02 2.11 16 33 H 0.07 0.71 8.11 -2.39 -0.02 0.70 16 34 H 0.07 1.04 7.58 -2.39 -0.02 1.02 16 35 H 0.08 0.88 6.61 -2.39 -0.02 0.87 16 36 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.10 0.81 6.74 -2.39 -0.02 0.79 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 41 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 42 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 43 H 0.06 1.63 8.04 -2.39 -0.02 1.61 16 44 H 0.07 1.54 6.73 -2.39 -0.02 1.52 16 Total: -1.00 -80.85 377.50 2.39 -78.47 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 1.01 Total: 13.65 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 8.74 Total: 11.58 kcal Atomic # 7 Polarization: -104.18 SS G_CDS: -8.18 Total: -112.36 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.05 Total: -26.62 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -80.85 2.39 -78.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095106901.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.952 kcal (2) G-P(sol) polarization free energy of solvation -80.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds