Wall clock time and date at job start Sat Apr 11 2020 04:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38119 * 120.40040 * 2 1 4 4 C 1.39629 * 118.33158 * 180.25786 * 3 2 1 5 5 N 1.38545 * 120.53122 * 179.70892 * 4 3 2 6 6 C 1.46499 * 120.00015 * 359.72445 * 5 4 3 7 7 H 1.09003 * 110.64167 * 328.14105 * 6 5 4 8 8 C 1.54323 * 110.72202 * 91.47371 * 6 5 4 9 9 N 1.47017 * 107.27194 * 140.55577 * 8 6 5 10 10 C 1.34775 * 125.65052 * 181.10104 * 9 8 6 11 11 O 1.21287 * 120.00139 * 179.97438 * 10 9 8 12 12 C 1.50698 * 119.99895 * 359.95673 * 10 9 8 13 13 S 1.81001 * 109.47106 * 180.02562 * 12 10 9 14 14 C 1.76202 * 100.00200 * 179.97438 * 13 12 10 15 15 H 1.08008 * 119.99735 * 359.97438 * 14 13 12 16 16 C 1.38795 * 120.00260 * 179.97438 * 14 13 12 17 17 N 1.31630 * 120.00134 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99872 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47433 * 60.00266 * 18 16 14 20 20 H 1.48503 * 109.47133 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47339 * 299.99870 * 18 16 14 22 22 C 1.47422 * 108.70321 * 1.06448 * 9 8 6 23 23 C 1.54916 * 104.83222 * 335.86928 * 22 9 8 24 24 H 1.09003 * 111.00318 * 278.93527 * 23 22 9 25 25 C 1.52994 * 111.00341 * 155.08238 * 23 22 9 26 26 N 1.32995 * 118.93470 * 359.43993 * 4 3 2 27 27 C 1.31740 * 120.68904 * 0.27441 * 26 4 3 28 28 N 1.31793 * 121.83466 * 0.02562 * 27 26 4 29 29 H 1.08998 * 109.47113 * 270.30645 * 1 2 3 30 30 H 1.08996 * 109.47100 * 30.30971 * 1 2 3 31 31 H 1.09001 * 109.46755 * 150.30655 * 1 2 3 32 32 H 1.07993 * 120.83635 * 359.97177 * 3 2 1 33 33 H 0.96999 * 120.00000 * 179.72567 * 5 4 3 34 34 H 1.08999 * 109.88846 * 259.97531 * 8 6 5 35 35 H 1.09004 * 109.87619 * 21.13993 * 8 6 5 36 36 H 1.09005 * 109.47024 * 300.00032 * 12 10 9 37 37 H 1.08993 * 109.47493 * 60.00003 * 12 10 9 38 38 H 0.96995 * 120.00312 * 179.97438 * 17 16 14 39 39 H 1.09006 * 110.36783 * 217.03365 * 22 9 8 40 40 H 1.08997 * 110.36866 * 94.71038 * 22 9 8 41 41 H 1.09000 * 109.47730 * 307.80934 * 25 23 22 42 42 H 1.09006 * 109.47305 * 67.80556 * 25 23 22 43 43 H 1.08997 * 109.47195 * 187.80281 * 25 23 22 44 44 H 1.08001 * 119.08764 * 180.02562 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1913 0.0000 4 6 3.6013 1.1409 -0.0055 5 7 4.3477 2.3081 -0.0118 6 6 3.6735 3.6087 -0.0188 7 1 2.7274 3.5482 -0.5569 8 6 3.4551 4.1183 1.4214 9 7 3.7096 5.5663 1.4153 10 6 3.6447 6.3798 2.4879 11 8 3.8759 7.5641 2.3657 12 6 3.2844 5.8179 3.8390 13 16 3.2800 7.1497 5.0646 14 6 2.8400 6.2374 6.5064 15 1 2.6658 5.1735 6.4400 16 6 2.7172 6.8858 7.7274 17 7 2.9290 8.1824 7.8083 18 14 2.2514 5.9183 9.2560 19 1 3.2718 4.8693 9.5080 20 1 2.1859 6.8359 10.4217 21 1 0.9256 5.2808 9.0535 22 6 4.0483 5.9810 0.0417 23 6 4.5885 4.6980 -0.6380 24 1 5.6325 4.5267 -0.3756 25 6 4.4108 4.7654 -2.1561 26 7 4.2023 -0.0455 0.0008 27 6 3.4956 -1.1572 0.0067 28 7 2.1777 -1.1432 0.0061 29 1 -0.3633 0.0055 1.0276 30 1 -0.3633 0.8872 -0.5186 31 1 -0.3633 -0.8927 -0.5091 32 1 1.6862 2.1380 -0.0005 33 1 5.3167 2.2641 -0.0116 34 1 2.4287 3.9236 1.7320 35 1 4.1501 3.6226 2.0992 36 1 2.2941 5.3648 3.7917 37 1 4.0162 5.0626 4.1253 38 1 2.8428 8.6356 8.6615 39 1 4.8166 6.7541 0.0574 40 1 3.1590 6.3393 -0.4766 41 1 3.3737 5.0057 -2.3904 42 1 5.0636 5.5369 -2.5645 43 1 4.6685 3.8017 -2.5953 44 1 4.0104 -2.1066 0.0122 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112297708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:36:53 Heat of formation + Delta-G solvation = 16.228941 kcal Electronic energy + Delta-G solvation = -25993.087225 eV Core-core repulsion = 22264.664191 eV Total energy + Delta-G solvation = -3728.423034 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.29105 -40.14868 -38.09097 -35.84733 -34.18415 -33.14353 -32.45733 -31.39711 -29.55202 -28.79513 -28.40078 -26.26158 -25.44775 -24.58740 -23.24280 -22.01081 -21.00355 -19.49374 -18.30673 -17.86749 -17.51823 -16.64092 -16.38041 -15.71426 -15.45985 -15.31376 -15.22634 -14.91729 -14.82739 -14.20173 -14.07684 -13.88911 -13.48328 -13.44759 -13.27820 -13.08215 -12.77248 -12.64785 -12.56311 -12.38987 -12.13374 -11.90371 -11.53126 -11.31907 -11.08293 -11.06430 -11.05572 -10.89053 -10.79154 -10.02492 -9.85888 -9.52743 -9.47066 -9.08583 -8.68409 -8.52525 -8.28625 -6.54281 -6.24307 -3.95672 0.78481 1.08879 2.41460 2.86774 2.96862 3.21851 3.23850 3.27388 3.54808 3.60704 3.85918 3.89629 4.08750 4.13652 4.17928 4.35621 4.42838 4.67364 4.84917 4.89605 4.94379 4.96265 4.97395 5.10807 5.23779 5.25343 5.27943 5.31570 5.38660 5.41586 5.48386 5.53235 5.61393 5.63735 5.67914 5.77517 5.85333 6.02028 6.07957 6.25589 6.39678 6.89192 7.18687 7.51084 7.56719 8.02117 8.32202 8.44529 9.20887 10.83095 Molecular weight = 336.14amu Principal moments of inertia in cm(-1) A = 0.010432 B = 0.002876 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.282861 B = 9734.756079 C =11728.085076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.203 3.797 3 C -0.294 4.294 4 C 0.442 3.558 5 N -0.699 5.699 6 C 0.144 3.856 7 H 0.105 0.895 8 C 0.087 3.913 9 N -0.626 5.626 10 C 0.550 3.450 11 O -0.511 6.511 12 C -0.148 4.148 13 S -0.059 6.059 14 C -0.537 4.537 15 H 0.072 0.928 16 C 0.075 3.925 17 N -0.868 5.868 18 Si 0.919 3.081 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.274 1.274 22 C 0.113 3.887 23 C -0.110 4.110 24 H 0.093 0.907 25 C -0.141 4.141 26 N -0.584 5.584 27 C 0.341 3.659 28 N -0.565 5.565 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.141 0.859 33 H 0.411 0.589 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.269 0.731 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.521 -15.486 -21.735 26.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.061 3.939 3 C -0.321 4.321 4 C 0.199 3.801 5 N -0.331 5.331 6 C 0.037 3.963 7 H 0.123 0.877 8 C -0.038 4.038 9 N -0.364 5.364 10 C 0.339 3.661 11 O -0.385 6.385 12 C -0.298 4.298 13 S 0.168 5.832 14 C -0.685 4.685 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.199 1.199 22 C -0.010 4.010 23 C -0.129 4.129 24 H 0.111 0.889 25 C -0.199 4.199 26 N -0.308 5.308 27 C 0.052 3.948 28 N -0.285 5.285 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.159 0.841 33 H 0.248 0.752 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 0.152 -14.149 -21.708 25.912 hybrid contribution -0.481 -1.318 1.258 1.884 sum -0.329 -15.467 -20.450 25.643 Atomic orbital electron populations 1.20785 0.88096 1.03844 1.03791 1.21410 0.97288 0.87677 0.87496 1.22017 0.93600 1.00957 1.15570 1.18517 0.88386 0.86635 0.86571 1.44402 1.08892 1.01350 1.78430 1.22147 0.97266 0.81451 0.95399 0.87710 1.22473 1.02229 0.81837 0.97257 1.48403 1.71760 1.08026 1.08175 1.20046 0.76079 0.85685 0.84284 1.90721 1.47860 1.15217 1.84683 1.23516 1.04136 1.06202 0.95960 1.85386 1.91171 1.07994 0.98677 1.22812 1.54867 0.96621 0.94180 0.91002 1.24985 0.94751 0.95115 0.98633 1.70002 1.45907 1.08067 1.26285 0.86226 0.79114 0.79404 0.80789 1.19914 1.20749 1.19900 1.22226 1.00618 0.96259 0.81920 1.22661 1.00085 0.93906 0.96275 0.88879 1.21707 1.02590 1.02508 0.93052 1.67944 1.41752 0.97808 1.23299 1.24643 0.86614 0.95631 0.87940 1.68280 1.09997 1.29970 1.20262 0.89557 0.90272 0.89996 0.84100 0.75222 0.90701 0.90585 0.89299 0.89368 0.92079 0.89691 0.91066 0.91959 0.91600 0.91989 0.78901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.21 36.00 0.37 -0.32 16 2 C 0.20 1.90 6.82 -82.33 -0.56 1.33 16 3 C -0.29 -2.61 8.98 -39.11 -0.35 -2.97 16 4 C 0.44 4.26 7.71 -154.77 -1.19 3.06 16 5 N -0.70 -5.43 5.26 -52.01 -0.27 -5.70 16 6 C 0.14 1.05 2.51 -66.10 -0.17 0.88 16 7 H 0.11 0.66 6.31 -51.93 -0.33 0.33 16 8 C 0.09 0.89 6.24 -3.07 -0.02 0.87 16 9 N -0.63 -8.34 3.33 -170.52 -0.57 -8.91 16 10 C 0.55 10.30 7.87 -10.99 -0.09 10.21 16 11 O -0.51 -11.53 16.12 5.55 0.09 -11.44 16 12 C -0.15 -3.00 5.35 36.00 0.19 -2.81 16 13 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 14 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 15 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 16 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 17 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 18 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 C 0.11 1.16 6.38 -2.53 -0.02 1.14 16 23 C -0.11 -0.76 3.27 -88.47 -0.29 -1.05 16 24 H 0.09 0.64 8.01 -51.93 -0.42 0.23 16 25 C -0.14 -0.76 9.31 37.15 0.35 -0.41 16 26 N -0.58 -6.14 10.47 -13.81 -0.14 -6.29 16 27 C 0.34 3.30 12.28 -92.20 -1.13 2.17 16 28 N -0.57 -5.92 10.37 -10.88 -0.11 -6.03 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.37 8.10 -51.93 -0.42 -0.05 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.14 1.00 6.32 -52.49 -0.33 0.67 16 33 H 0.41 2.98 8.69 -40.82 -0.35 2.63 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.84 8.03 -51.93 -0.42 0.42 16 36 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 37 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 38 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.08 0.97 8.04 -51.93 -0.42 0.55 16 40 H 0.07 0.67 7.98 -51.93 -0.41 0.26 16 41 H 0.06 0.31 8.07 -51.93 -0.42 -0.11 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.19 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 382.83 15.07 5.77 5.77 Total: -1.00 -35.71 382.83 -10.90 -46.61 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -6.44 Total: -0.37 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -2.71 Total: -0.84 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -0.36 Total: -52.28 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.71 -10.90 -46.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112297708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.837 kcal (2) G-P(sol) polarization free energy of solvation -35.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds