Wall clock time and date at job start Sat Apr 11 2020 04:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38119 * 120.40040 * 2 1 4 4 C 1.39629 * 118.33158 * 180.25786 * 3 2 1 5 5 N 1.38545 * 120.53122 * 179.70892 * 4 3 2 6 6 C 1.46499 * 120.00015 * 359.72445 * 5 4 3 7 7 H 1.09003 * 110.64167 * 328.14105 * 6 5 4 8 8 C 1.54323 * 110.72202 * 91.47371 * 6 5 4 9 9 N 1.47017 * 107.27194 * 140.55577 * 8 6 5 10 10 C 1.34775 * 125.65052 * 181.10104 * 9 8 6 11 11 O 1.21287 * 120.00139 * 179.97438 * 10 9 8 12 12 C 1.50698 * 119.99895 * 359.95673 * 10 9 8 13 13 S 1.81001 * 109.47106 * 180.02562 * 12 10 9 14 14 C 1.76202 * 100.00200 * 179.97438 * 13 12 10 15 15 H 1.08008 * 119.99735 * 359.97438 * 14 13 12 16 16 C 1.38795 * 120.00260 * 179.97438 * 14 13 12 17 17 N 1.31630 * 120.00134 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99872 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47433 * 60.00266 * 18 16 14 20 20 H 1.48503 * 109.47133 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47339 * 299.99870 * 18 16 14 22 22 C 1.47422 * 108.70321 * 1.06448 * 9 8 6 23 23 C 1.54916 * 104.83222 * 335.86928 * 22 9 8 24 24 H 1.09003 * 111.00318 * 278.93527 * 23 22 9 25 25 C 1.52994 * 111.00341 * 155.08238 * 23 22 9 26 26 N 1.32995 * 118.93470 * 359.43993 * 4 3 2 27 27 C 1.31740 * 120.68904 * 0.27441 * 26 4 3 28 28 N 1.31793 * 121.83466 * 0.02562 * 27 26 4 29 29 H 1.08998 * 109.47113 * 270.30645 * 1 2 3 30 30 H 1.08996 * 109.47100 * 30.30971 * 1 2 3 31 31 H 1.09001 * 109.46755 * 150.30655 * 1 2 3 32 32 H 1.07993 * 120.83635 * 359.97177 * 3 2 1 33 33 H 0.96999 * 120.00000 * 179.72567 * 5 4 3 34 34 H 1.08999 * 109.88846 * 259.97531 * 8 6 5 35 35 H 1.09004 * 109.87619 * 21.13993 * 8 6 5 36 36 H 1.09005 * 109.47024 * 300.00032 * 12 10 9 37 37 H 1.08993 * 109.47493 * 60.00003 * 12 10 9 38 38 H 0.96995 * 120.00312 * 179.97438 * 17 16 14 39 39 H 1.09006 * 110.36783 * 217.03365 * 22 9 8 40 40 H 1.08997 * 110.36866 * 94.71038 * 22 9 8 41 41 H 1.09000 * 109.47730 * 307.80934 * 25 23 22 42 42 H 1.09006 * 109.47305 * 67.80556 * 25 23 22 43 43 H 1.08997 * 109.47195 * 187.80281 * 25 23 22 44 44 H 1.08001 * 119.08764 * 180.02562 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1913 0.0000 4 6 3.6013 1.1409 -0.0055 5 7 4.3477 2.3081 -0.0118 6 6 3.6735 3.6087 -0.0188 7 1 2.7274 3.5482 -0.5569 8 6 3.4551 4.1183 1.4214 9 7 3.7096 5.5663 1.4153 10 6 3.6447 6.3798 2.4879 11 8 3.8759 7.5641 2.3657 12 6 3.2844 5.8179 3.8390 13 16 3.2800 7.1497 5.0646 14 6 2.8400 6.2374 6.5064 15 1 2.6658 5.1735 6.4400 16 6 2.7172 6.8858 7.7274 17 7 2.9290 8.1824 7.8083 18 14 2.2514 5.9183 9.2560 19 1 3.2718 4.8693 9.5080 20 1 2.1859 6.8359 10.4217 21 1 0.9256 5.2808 9.0535 22 6 4.0483 5.9810 0.0417 23 6 4.5885 4.6980 -0.6380 24 1 5.6325 4.5267 -0.3756 25 6 4.4108 4.7654 -2.1561 26 7 4.2023 -0.0455 0.0008 27 6 3.4956 -1.1572 0.0067 28 7 2.1777 -1.1432 0.0061 29 1 -0.3633 0.0055 1.0276 30 1 -0.3633 0.8872 -0.5186 31 1 -0.3633 -0.8927 -0.5091 32 1 1.6862 2.1380 -0.0005 33 1 5.3167 2.2641 -0.0116 34 1 2.4287 3.9236 1.7320 35 1 4.1501 3.6226 2.0992 36 1 2.2941 5.3648 3.7917 37 1 4.0162 5.0626 4.1253 38 1 2.8428 8.6356 8.6615 39 1 4.8166 6.7541 0.0574 40 1 3.1590 6.3393 -0.4766 41 1 3.3737 5.0057 -2.3904 42 1 5.0636 5.5369 -2.5645 43 1 4.6685 3.8017 -2.5953 44 1 4.0104 -2.1066 0.0122 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112297708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:36:52 Heat of formation + Delta-G solvation = -6.750304 kcal Electronic energy + Delta-G solvation = -25994.083680 eV Core-core repulsion = 22264.664191 eV Total energy + Delta-G solvation = -3729.419489 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.136 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.98431 -41.18868 -39.25084 -36.66927 -34.89158 -34.61593 -34.02119 -32.08023 -30.98173 -29.56192 -29.01140 -27.78291 -26.96541 -25.34035 -24.00076 -22.72216 -21.66785 -20.82193 -19.63089 -18.99424 -18.40797 -17.94325 -17.30676 -16.90878 -16.70178 -16.38041 -16.11318 -16.07222 -15.91580 -15.65754 -14.94700 -14.86387 -14.53653 -14.37256 -14.24615 -13.87872 -13.85174 -13.59419 -13.41261 -13.19742 -13.14597 -13.04362 -12.89410 -12.75466 -12.64148 -12.15564 -11.99193 -11.76399 -11.71960 -11.54288 -11.15740 -11.05623 -10.67074 -10.33385 -10.17846 -9.80630 -9.21451 -8.71254 -8.37402 -6.16418 0.11985 0.39677 1.19200 1.41088 1.41778 1.49067 1.51871 1.75528 2.13201 2.24555 2.91561 2.96667 3.11210 3.29725 3.31819 3.40265 3.47000 3.70919 3.79367 3.83286 3.99860 4.16224 4.19446 4.28208 4.38023 4.39620 4.42870 4.58176 4.63601 4.65019 4.69572 4.78652 4.82072 4.91570 4.96685 5.09422 5.14720 5.20536 5.35811 5.38195 5.42255 5.76187 6.16383 6.22624 6.25675 6.54990 7.03434 7.04011 7.34124 8.71645 Molecular weight = 336.14amu Principal moments of inertia in cm(-1) A = 0.010432 B = 0.002876 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.282861 B = 9734.756079 C =11728.085076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.189 3.811 3 C -0.297 4.297 4 C 0.431 3.569 5 N -0.691 5.691 6 C 0.157 3.843 7 H 0.125 0.875 8 C 0.080 3.920 9 N -0.614 5.614 10 C 0.549 3.451 11 O -0.560 6.560 12 C -0.122 4.122 13 S -0.145 6.145 14 C -0.549 4.549 15 H 0.080 0.920 16 C 0.016 3.984 17 N -0.910 5.910 18 Si 0.997 3.003 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.261 1.261 22 C 0.106 3.894 23 C -0.094 4.094 24 H 0.095 0.905 25 C -0.136 4.136 26 N -0.602 5.602 27 C 0.332 3.668 28 N -0.585 5.585 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.160 0.840 33 H 0.413 0.587 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.272 0.728 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.324 -17.684 -22.803 28.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.048 3.952 3 C -0.325 4.325 4 C 0.188 3.812 5 N -0.323 5.323 6 C 0.051 3.949 7 H 0.143 0.857 8 C -0.045 4.045 9 N -0.349 5.349 10 C 0.337 3.663 11 O -0.439 6.439 12 C -0.273 4.273 13 S 0.082 5.918 14 C -0.697 4.697 15 H 0.099 0.901 16 C -0.189 4.189 17 N -0.546 5.546 18 Si 0.818 3.182 19 H -0.188 1.188 20 H -0.202 1.202 21 H -0.186 1.186 22 C -0.016 4.016 23 C -0.114 4.114 24 H 0.114 0.886 25 C -0.193 4.193 26 N -0.327 5.327 27 C 0.042 3.958 28 N -0.306 5.306 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.178 0.822 33 H 0.251 0.749 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -0.649 -16.396 -22.829 28.114 hybrid contribution -0.207 -0.706 1.459 1.634 sum -0.856 -17.102 -21.370 27.384 Atomic orbital electron populations 1.20858 0.86316 1.04839 1.04274 1.21914 0.98628 0.87637 0.87045 1.22224 0.93356 1.01664 1.15209 1.18743 0.88981 0.86816 0.86704 1.44352 1.08971 1.00957 1.78012 1.22087 0.98218 0.81175 0.93455 0.85714 1.22752 1.02687 0.79597 0.99438 1.48254 1.69462 1.09052 1.08095 1.19687 0.76303 0.85412 0.84883 1.90701 1.50528 1.17223 1.85407 1.23314 1.05554 1.03450 0.95011 1.85534 1.91527 1.13060 1.01692 1.23147 1.54907 0.96992 0.94643 0.90139 1.26108 0.94319 0.96159 1.02332 1.70164 1.47066 1.10083 1.27297 0.85027 0.79313 0.77861 0.75957 1.18798 1.20190 1.18561 1.22506 1.01086 0.97744 0.80268 1.22575 0.99943 0.91619 0.97230 0.88640 1.21685 1.03352 1.03063 0.91222 1.67973 1.42284 0.98368 1.24086 1.25142 0.86728 0.96392 0.87497 1.68336 1.10422 1.30780 1.21017 0.89190 0.88351 0.89964 0.82230 0.74908 0.89699 0.91141 0.87601 0.88155 0.91879 0.91131 0.89602 0.91076 0.91176 0.91345 0.76766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.21 71.23 0.73 -0.40 16 2 C 0.19 3.17 6.82 42.42 0.29 3.46 16 3 C -0.30 -4.54 8.98 22.58 0.20 -4.34 16 4 C 0.43 7.37 7.71 133.16 1.03 8.40 16 5 N -0.69 -8.99 5.26 -318.45 -1.67 -10.66 16 6 C 0.16 1.82 2.51 46.18 0.12 1.93 16 7 H 0.13 1.05 6.31 -2.39 -0.02 1.04 16 8 C 0.08 1.44 6.24 86.73 0.54 1.98 16 9 N -0.61 -15.53 3.33 -811.79 -2.70 -18.23 16 10 C 0.55 20.56 7.87 87.66 0.69 21.25 16 11 O -0.56 -26.02 16.12 -3.05 -0.05 -26.07 16 12 C -0.12 -4.96 5.35 71.24 0.38 -4.58 16 13 S -0.15 -8.12 20.57 -56.49 -1.16 -9.28 16 14 C -0.55 -31.53 9.50 67.95 0.65 -30.88 16 15 H 0.08 4.31 7.80 -2.91 -0.02 4.28 16 16 C 0.02 0.91 5.49 84.86 0.47 1.37 16 17 N -0.91 -55.87 13.22 21.65 0.29 -55.58 16 18 Si 1.00 43.60 29.55 68.60 2.03 45.63 16 19 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 20 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 21 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 22 C 0.11 1.99 6.38 86.86 0.55 2.55 16 23 C -0.09 -1.06 3.27 -9.40 -0.03 -1.09 16 24 H 0.10 1.09 8.01 -2.39 -0.02 1.07 16 25 C -0.14 -1.01 9.31 71.98 0.67 -0.34 16 26 N -0.60 -11.78 10.47 -197.61 -2.07 -13.85 16 27 C 0.33 6.00 12.28 180.90 2.22 8.22 16 28 N -0.59 -11.49 10.37 -188.34 -1.95 -13.44 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.10 0.64 8.10 -2.39 -0.02 0.62 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 32 H 0.16 1.69 6.32 -2.91 -0.02 1.67 16 33 H 0.41 5.07 8.69 -92.71 -0.81 4.27 16 34 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.40 8.03 -2.38 -0.02 1.38 16 36 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 37 H 0.10 3.79 8.14 -2.40 -0.02 3.77 16 38 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 39 H 0.07 1.57 8.04 -2.38 -0.02 1.56 16 40 H 0.09 1.42 7.98 -2.39 -0.02 1.40 16 41 H 0.07 0.44 8.07 -2.39 -0.02 0.42 16 42 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 43 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.22 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -80.12 382.83 1.42 -78.70 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.21 Total: 15.26 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 8.50 Total: 7.53 kcal Atomic # 7 Polarization: -103.66 SS G_CDS: -8.11 Total: -111.77 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.05 Total: -26.07 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: -8.12 SS G_CDS: -1.16 Total: -9.28 kcal Total: -80.12 1.42 -78.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112297708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.952 kcal (2) G-P(sol) polarization free energy of solvation -80.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds