Wall clock time and date at job start Sat Apr 11 2020 04:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38600 * 120.80004 * 2 1 4 4 N 1.32332 * 119.10235 * 179.97438 * 3 2 1 5 5 C 1.31793 * 120.82098 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.12539 * 180.02562 * 5 4 3 7 7 N 1.46899 * 109.47285 * 89.99550 * 6 5 4 8 8 C 1.46895 * 110.99911 * 179.97438 * 7 6 5 9 9 H 1.08998 * 112.84892 * 23.80931 * 8 7 6 10 10 C 1.53782 * 113.61054 * 155.00278 * 8 7 6 11 11 C 1.53784 * 87.08146 * 140.06604 * 10 8 7 12 12 H 1.09006 * 113.61218 * 89.20073 * 11 10 8 13 13 N 1.46500 * 113.61588 * 220.01764 * 11 10 8 14 14 C 1.34774 * 119.99961 * 204.99992 * 13 11 10 15 15 O 1.21281 * 120.00138 * 359.97438 * 14 13 11 16 16 C 1.50701 * 119.99738 * 179.97438 * 14 13 11 17 17 S 1.80996 * 109.47055 * 179.97438 * 16 14 13 18 18 C 1.76194 * 100.00259 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00080 * 0.28240 * 18 17 16 20 20 C 1.38805 * 120.00285 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99709 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99953 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46986 * 90.00492 * 22 20 18 24 24 H 1.48496 * 109.47029 * 210.00509 * 22 20 18 25 25 H 1.48499 * 109.47352 * 330.00339 * 22 20 18 26 26 C 1.53780 * 113.69120 * 252.53389 * 8 7 6 27 27 N 1.31799 * 121.75438 * 0.27534 * 5 4 3 28 28 C 1.32336 * 120.81595 * 359.44160 * 27 5 4 29 29 H 1.08994 * 109.47554 * 89.99966 * 1 2 3 30 30 H 1.09000 * 109.47028 * 210.00133 * 1 2 3 31 31 H 1.09002 * 109.46787 * 329.99622 * 1 2 3 32 32 H 1.07997 * 120.45148 * 359.97438 * 3 2 1 33 33 H 1.09004 * 109.46605 * 330.00028 * 6 5 4 34 34 H 1.09000 * 109.47246 * 210.00267 * 6 5 4 35 35 H 1.00906 * 110.99453 * 56.04847 * 7 6 5 36 36 H 1.09000 * 113.61532 * 25.51625 * 10 8 7 37 37 H 1.09004 * 113.61777 * 254.61448 * 10 8 7 38 38 H 0.97003 * 119.99684 * 24.99812 * 13 11 10 39 39 H 1.09005 * 109.46991 * 60.00046 * 16 14 13 40 40 H 1.08994 * 109.47632 * 300.00284 * 16 14 13 41 41 H 0.97000 * 119.99481 * 179.97438 * 21 20 18 42 42 H 1.09004 * 113.60876 * 105.46684 * 26 8 7 43 43 H 1.08998 * 113.61735 * 334.56560 * 26 8 7 44 44 H 1.07995 * 120.44583 * 180.29299 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1905 0.0000 4 7 3.5394 1.1513 0.0005 5 6 4.1808 0.0000 0.0015 6 6 5.6879 -0.0001 0.0027 7 7 6.1765 0.0007 1.3880 8 6 7.6449 0.0000 1.4283 9 1 8.0934 0.4047 0.5210 10 6 8.2259 0.5961 2.7213 11 6 9.2748 -0.5276 2.6749 12 1 10.1695 -0.2666 2.1096 13 7 9.5788 -1.1012 3.9882 14 6 10.7691 -1.6950 4.2050 15 8 11.5884 -1.7549 3.3127 16 6 11.0820 -2.2846 5.5561 17 16 12.7427 -3.0041 5.5305 18 6 12.8430 -3.6012 7.1851 19 1 12.0100 -3.4666 7.8593 20 6 13.9902 -4.2502 7.6204 21 7 15.0033 -4.4191 6.7972 22 14 14.0963 -4.8839 9.3745 23 1 13.5866 -6.2777 9.4289 24 1 15.5106 -4.8560 9.8262 25 1 13.2759 -4.0218 10.2627 26 6 8.2504 -1.3432 1.8686 27 7 3.5394 -1.1514 -0.0033 28 6 2.2167 -1.1905 0.0017 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6973 2.1374 -0.0004 33 1 6.0515 0.8897 -0.5113 34 1 6.0516 -0.8903 -0.5105 35 1 5.8006 -0.7805 1.9044 36 1 7.5513 0.5287 3.5748 37 1 8.6478 1.5928 2.5917 38 1 8.9234 -1.0536 4.7017 39 1 10.3538 -3.0608 5.7913 40 1 11.0363 -1.5021 6.3135 41 1 15.8051 -4.8724 7.1015 42 1 8.6920 -1.9122 1.0504 43 1 7.5825 -1.9409 2.4889 44 1 1.6972 -2.1373 0.0024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731470708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:38:02 Heat of formation + Delta-G solvation = 29.309640 kcal Electronic energy + Delta-G solvation = -24433.998939 eV Core-core repulsion = 20706.143126 eV Total energy + Delta-G solvation = -3727.855813 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.55140 -40.03034 -38.29865 -35.65446 -34.15933 -33.92659 -32.54340 -32.41019 -29.33809 -28.50617 -25.84615 -25.61283 -25.41196 -25.13327 -23.13373 -22.26661 -20.35957 -20.07268 -18.22846 -17.78761 -17.34028 -16.70868 -16.26314 -15.90432 -15.37595 -15.05526 -14.94340 -14.79471 -14.69334 -14.39765 -14.12557 -13.85472 -13.82951 -13.45296 -13.07137 -13.02940 -12.83437 -12.68214 -12.59814 -12.47990 -11.88423 -11.44076 -11.35067 -11.27427 -11.05419 -11.03101 -10.98978 -10.90808 -10.72636 -9.79917 -9.72860 -9.64543 -9.34350 -9.05612 -8.90255 -8.65486 -8.21753 -6.48221 -6.20297 -3.90606 0.35384 0.63316 3.03199 3.09947 3.15868 3.23390 3.29416 3.34340 3.43327 3.69460 3.75064 4.03554 4.09345 4.21911 4.25457 4.28804 4.39861 4.49025 4.69137 4.74745 4.78728 4.93979 4.96104 5.11357 5.14920 5.16622 5.19226 5.35492 5.37494 5.45058 5.54611 5.61625 5.66052 5.82206 5.84441 5.91645 5.92018 6.06710 6.16558 6.50734 6.63760 6.72147 6.93769 7.60989 7.65718 7.76198 8.36637 8.64967 9.25063 10.87167 Molecular weight = 336.14amu Principal moments of inertia in cm(-1) A = 0.026313 B = 0.001531 C = 0.001483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.837430 B =18287.500335 C =18875.549283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.196 4.196 3 C 0.147 3.853 4 N -0.496 5.496 5 C 0.315 3.685 6 C 0.127 3.873 7 N -0.667 5.667 8 C 0.071 3.929 9 H 0.104 0.896 10 C -0.132 4.132 11 C 0.127 3.873 12 H 0.116 0.884 13 N -0.727 5.727 14 C 0.533 3.467 15 O -0.518 6.518 16 C -0.154 4.154 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.180 4.180 27 N -0.512 5.512 28 C 0.147 3.853 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.168 0.832 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.346 0.654 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.398 0.602 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.268 0.732 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.406 11.081 -14.441 35.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.200 4.200 3 C -0.020 4.020 4 N -0.209 5.209 5 C 0.047 3.953 6 C -0.004 4.004 7 N -0.298 5.298 8 C -0.040 4.040 9 H 0.122 0.878 10 C -0.171 4.171 11 C 0.021 3.979 12 H 0.133 0.867 13 N -0.380 5.380 14 C 0.319 3.681 15 O -0.393 6.393 16 C -0.305 4.305 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.221 4.221 27 N -0.225 5.225 28 C -0.019 4.019 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.185 0.815 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.165 0.835 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.232 0.768 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -27.869 11.598 -15.904 34.120 hybrid contribution -2.110 -1.307 2.280 3.370 sum -29.980 10.291 -13.624 34.501 Atomic orbital electron populations 1.20663 0.89052 1.03664 1.02950 1.21762 0.99246 0.95727 1.03259 1.23224 0.89609 0.98274 0.90892 1.68262 1.09731 1.30484 1.12468 1.23058 0.97588 0.83404 0.91213 1.20652 0.85244 1.02872 0.91592 1.60418 1.07658 1.50159 1.11607 1.22849 0.86023 0.96313 0.98801 0.87835 1.23453 0.96908 0.98634 0.98101 1.22227 0.97094 0.93532 0.85053 0.86655 1.45956 1.17947 1.60349 1.13716 1.20344 0.80923 0.77013 0.89834 1.90691 1.46897 1.56414 1.45260 1.23541 1.07298 1.03479 0.96175 1.85385 1.08408 1.72233 1.17360 1.22877 1.04587 1.43498 0.97449 0.90945 1.24988 0.94692 0.95313 0.98559 1.70019 1.04999 1.40038 1.35238 0.86170 0.77556 0.79128 0.82659 1.20292 1.20740 1.19702 1.24210 0.99500 0.97521 1.00839 1.68262 1.10138 1.30642 1.13493 1.23171 0.89473 0.98320 0.90974 0.90539 0.90831 0.90817 0.81523 0.88260 0.92100 0.83456 0.89253 0.90462 0.76756 0.89288 0.89212 0.92197 0.90811 0.89533 0.81536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.24 10.06 36.01 0.36 0.13 16 2 C -0.20 -1.06 5.91 -104.36 -0.62 -1.68 16 3 C 0.15 0.98 11.01 -17.20 -0.19 0.79 16 4 N -0.50 -4.70 10.33 -10.72 -0.11 -4.81 16 5 C 0.32 3.00 7.16 -157.19 -1.12 1.87 16 6 C 0.13 1.06 5.96 -4.98 -0.03 1.03 16 7 N -0.67 -5.72 6.61 -107.13 -0.71 -6.43 16 8 C 0.07 0.59 4.18 -66.90 -0.28 0.31 16 9 H 0.10 0.79 7.87 -51.93 -0.41 0.38 16 10 C -0.13 -1.18 7.63 -25.92 -0.20 -1.38 16 11 C 0.13 1.47 4.24 -67.12 -0.28 1.19 16 12 H 0.12 1.54 7.47 -51.93 -0.39 1.16 16 13 N -0.73 -9.74 5.35 -53.01 -0.28 -10.03 16 14 C 0.53 10.01 7.85 -10.99 -0.09 9.92 16 15 O -0.52 -11.83 15.46 5.56 0.09 -11.75 16 16 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 17 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 18 C -0.54 -15.40 9.50 30.94 0.29 -15.10 16 19 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.33 13.22 55.49 0.73 -25.59 16 22 Si 0.92 21.54 29.55 -169.99 -5.02 16.51 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 C -0.18 -1.78 7.50 -25.92 -0.19 -1.97 16 27 N -0.51 -4.73 10.33 -10.72 -0.11 -4.84 16 28 C 0.15 0.98 11.01 -17.20 -0.19 0.79 16 29 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.07 0.11 8.10 -51.93 -0.42 -0.31 16 31 H 0.07 0.11 8.10 -51.93 -0.42 -0.31 16 32 H 0.17 0.62 8.06 -52.49 -0.42 0.20 16 33 H 0.10 0.79 8.13 -51.93 -0.42 0.36 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.35 3.03 8.19 -39.29 -0.32 2.71 16 36 H 0.09 0.77 8.12 -51.93 -0.42 0.35 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.40 4.23 8.73 -40.82 -0.36 3.88 16 39 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 40 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 41 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.09 0.84 7.83 -51.93 -0.41 0.43 16 44 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 LS Contribution 390.04 15.07 5.88 5.88 Total: -1.00 -36.40 390.04 -10.65 -47.06 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -6.49 Total: 2.87 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -2.41 Total: -5.00 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.48 Total: -51.70 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.75 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.40 -10.65 -47.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731470708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.368 kcal (2) G-P(sol) polarization free energy of solvation -36.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds