Wall clock time and date at job start Sat Apr 11 2020 04:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38600 * 120.80004 * 2 1 4 4 N 1.32332 * 119.10235 * 179.97438 * 3 2 1 5 5 C 1.31793 * 120.82098 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.12539 * 180.02562 * 5 4 3 7 7 N 1.46899 * 109.47285 * 89.99550 * 6 5 4 8 8 C 1.46895 * 110.99911 * 179.97438 * 7 6 5 9 9 H 1.08998 * 112.84892 * 23.80931 * 8 7 6 10 10 C 1.53782 * 113.61054 * 155.00278 * 8 7 6 11 11 C 1.53784 * 87.08146 * 140.06604 * 10 8 7 12 12 H 1.09006 * 113.61218 * 89.20073 * 11 10 8 13 13 N 1.46500 * 113.61588 * 220.01764 * 11 10 8 14 14 C 1.34774 * 119.99961 * 204.99992 * 13 11 10 15 15 O 1.21281 * 120.00138 * 359.97438 * 14 13 11 16 16 C 1.50701 * 119.99738 * 179.97438 * 14 13 11 17 17 S 1.80996 * 109.47055 * 179.97438 * 16 14 13 18 18 C 1.76194 * 100.00259 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00080 * 0.28240 * 18 17 16 20 20 C 1.38805 * 120.00285 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99709 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99953 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46986 * 90.00492 * 22 20 18 24 24 H 1.48496 * 109.47029 * 210.00509 * 22 20 18 25 25 H 1.48499 * 109.47352 * 330.00339 * 22 20 18 26 26 C 1.53780 * 113.69120 * 252.53389 * 8 7 6 27 27 N 1.31799 * 121.75438 * 0.27534 * 5 4 3 28 28 C 1.32336 * 120.81595 * 359.44160 * 27 5 4 29 29 H 1.08994 * 109.47554 * 89.99966 * 1 2 3 30 30 H 1.09000 * 109.47028 * 210.00133 * 1 2 3 31 31 H 1.09002 * 109.46787 * 329.99622 * 1 2 3 32 32 H 1.07997 * 120.45148 * 359.97438 * 3 2 1 33 33 H 1.09004 * 109.46605 * 330.00028 * 6 5 4 34 34 H 1.09000 * 109.47246 * 210.00267 * 6 5 4 35 35 H 1.00906 * 110.99453 * 56.04847 * 7 6 5 36 36 H 1.09000 * 113.61532 * 25.51625 * 10 8 7 37 37 H 1.09004 * 113.61777 * 254.61448 * 10 8 7 38 38 H 0.97003 * 119.99684 * 24.99812 * 13 11 10 39 39 H 1.09005 * 109.46991 * 60.00046 * 16 14 13 40 40 H 1.08994 * 109.47632 * 300.00284 * 16 14 13 41 41 H 0.97000 * 119.99481 * 179.97438 * 21 20 18 42 42 H 1.09004 * 113.60876 * 105.46684 * 26 8 7 43 43 H 1.08998 * 113.61735 * 334.56560 * 26 8 7 44 44 H 1.07995 * 120.44583 * 180.29299 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1905 0.0000 4 7 3.5394 1.1513 0.0005 5 6 4.1808 0.0000 0.0015 6 6 5.6879 -0.0001 0.0027 7 7 6.1765 0.0007 1.3880 8 6 7.6449 0.0000 1.4283 9 1 8.0934 0.4047 0.5210 10 6 8.2259 0.5961 2.7213 11 6 9.2748 -0.5276 2.6749 12 1 10.1695 -0.2666 2.1096 13 7 9.5788 -1.1012 3.9882 14 6 10.7691 -1.6950 4.2050 15 8 11.5884 -1.7549 3.3127 16 6 11.0820 -2.2846 5.5561 17 16 12.7427 -3.0041 5.5305 18 6 12.8430 -3.6012 7.1851 19 1 12.0100 -3.4666 7.8593 20 6 13.9902 -4.2502 7.6204 21 7 15.0033 -4.4191 6.7972 22 14 14.0963 -4.8839 9.3745 23 1 13.5866 -6.2777 9.4289 24 1 15.5106 -4.8560 9.8262 25 1 13.2759 -4.0218 10.2627 26 6 8.2504 -1.3432 1.8686 27 7 3.5394 -1.1514 -0.0033 28 6 2.2167 -1.1905 0.0017 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6973 2.1374 -0.0004 33 1 6.0515 0.8897 -0.5113 34 1 6.0516 -0.8903 -0.5105 35 1 5.8006 -0.7805 1.9044 36 1 7.5513 0.5287 3.5748 37 1 8.6478 1.5928 2.5917 38 1 8.9234 -1.0536 4.7017 39 1 10.3538 -3.0608 5.7913 40 1 11.0363 -1.5021 6.3135 41 1 15.8051 -4.8724 7.1015 42 1 8.6920 -1.9122 1.0504 43 1 7.5825 -1.9409 2.4889 44 1 1.6972 -2.1373 0.0024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731470708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:38:01 Heat of formation + Delta-G solvation = 2.123742 kcal Electronic energy + Delta-G solvation = -24435.177808 eV Core-core repulsion = 20706.143126 eV Total energy + Delta-G solvation = -3729.034682 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.07432 -41.11967 -39.52218 -36.36613 -34.74495 -34.70553 -34.58119 -33.49760 -30.72231 -29.16520 -27.67560 -26.64223 -26.08187 -25.63164 -24.03740 -22.80489 -21.69140 -20.98264 -19.76713 -18.76323 -17.97159 -17.81870 -17.56154 -16.88015 -16.63486 -16.44458 -16.14782 -15.95246 -15.42547 -15.33479 -15.08736 -14.71428 -14.57203 -14.39746 -14.35519 -13.92147 -13.71120 -13.43348 -13.31079 -13.21585 -13.16612 -13.09253 -12.88893 -12.64393 -12.19491 -12.06791 -11.86518 -11.82821 -11.72511 -11.64779 -11.14332 -10.88648 -10.27724 -10.19694 -10.17675 -10.02714 -9.41146 -8.66762 -8.34704 -6.12861 -0.15161 0.13047 1.27367 1.42495 1.47349 1.57953 1.60796 2.26213 2.30684 2.61436 2.89908 2.99465 3.21572 3.30839 3.33704 3.58647 3.68989 3.70042 3.89137 3.93357 3.94267 3.96536 4.02737 4.23848 4.30994 4.41132 4.50803 4.57821 4.63764 4.76322 4.77466 4.82439 4.83013 4.99108 5.07706 5.08370 5.12275 5.16589 5.41699 5.48836 5.58302 5.93508 6.02134 6.19732 6.25634 6.54173 7.06556 7.10891 7.26749 8.74600 Molecular weight = 336.14amu Principal moments of inertia in cm(-1) A = 0.026313 B = 0.001531 C = 0.001483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.837430 B =18287.500335 C =18875.549283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.184 4.184 3 C 0.132 3.868 4 N -0.522 5.522 5 C 0.295 3.705 6 C 0.130 3.870 7 N -0.666 5.666 8 C 0.083 3.917 9 H 0.112 0.888 10 C -0.117 4.117 11 C 0.114 3.886 12 H 0.095 0.905 13 N -0.701 5.701 14 C 0.534 3.466 15 O -0.567 6.567 16 C -0.130 4.130 17 S -0.152 6.152 18 C -0.548 4.548 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.258 1.258 26 C -0.174 4.174 27 N -0.534 5.534 28 C 0.132 3.868 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.193 0.807 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.346 0.654 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.416 0.584 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.271 0.729 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.688 11.657 -13.267 38.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.188 4.188 3 C -0.034 4.034 4 N -0.236 5.236 5 C 0.027 3.973 6 C 0.000 4.000 7 N -0.297 5.297 8 C -0.028 4.028 9 H 0.130 0.870 10 C -0.156 4.156 11 C 0.008 3.992 12 H 0.113 0.887 13 N -0.354 5.354 14 C 0.320 3.680 15 O -0.445 6.445 16 C -0.282 4.282 17 S 0.075 5.925 18 C -0.696 4.696 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.193 1.193 24 H -0.202 1.202 25 H -0.182 1.182 26 C -0.214 4.214 27 N -0.249 5.249 28 C -0.034 4.034 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.210 0.790 33 H 0.119 0.881 34 H 0.078 0.922 35 H 0.165 0.835 36 H 0.118 0.882 37 H 0.102 0.898 38 H 0.253 0.747 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.110 0.890 44 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -31.230 12.203 -14.729 36.622 hybrid contribution -1.285 -1.422 1.824 2.646 sum -32.515 10.780 -12.905 36.606 Atomic orbital electron populations 1.20748 0.86516 1.04809 1.03948 1.22089 1.00891 0.94773 1.01033 1.23759 0.89045 0.99972 0.90577 1.68243 1.11230 1.30670 1.13419 1.23119 0.97925 0.83737 0.92506 1.20618 0.85244 1.02855 0.91304 1.60407 1.07346 1.50061 1.11898 1.22756 0.86121 0.94975 0.98963 0.86990 1.23377 0.95663 0.97840 0.98686 1.22419 0.97278 0.95487 0.83977 0.88678 1.45733 1.16266 1.58270 1.15087 1.20101 0.81995 0.77273 0.88633 1.90681 1.48815 1.58672 1.46341 1.23387 1.02612 1.04177 0.97995 1.85566 1.14893 1.73580 1.18425 1.23217 1.05231 1.43647 0.97476 0.89938 1.26128 0.94067 0.95275 1.03610 1.70185 1.05782 1.41031 1.37768 0.84948 0.77865 0.78739 0.76388 1.19309 1.20240 1.18208 1.24174 0.98854 0.98158 1.00246 1.68250 1.11549 1.30740 1.14326 1.23702 0.88965 0.99989 0.90718 0.89413 0.89743 0.89643 0.79031 0.88131 0.92177 0.83524 0.88245 0.89768 0.74706 0.87326 0.87233 0.91985 0.91786 0.88957 0.79153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.16 10.06 71.24 0.72 0.55 16 2 C -0.18 -1.65 5.91 -19.69 -0.12 -1.76 16 3 C 0.13 1.57 11.01 84.70 0.93 2.51 16 4 N -0.52 -9.53 10.33 -187.84 -1.94 -11.47 16 5 C 0.30 5.49 7.16 138.75 0.99 6.48 16 6 C 0.13 2.12 5.96 85.56 0.51 2.63 16 7 N -0.67 -10.65 6.61 -492.86 -3.26 -13.91 16 8 C 0.08 1.27 4.18 45.44 0.19 1.46 16 9 H 0.11 1.58 7.87 -2.39 -0.02 1.56 16 10 C -0.12 -1.87 7.63 31.12 0.24 -1.63 16 11 C 0.11 2.54 4.24 45.52 0.19 2.74 16 12 H 0.10 2.59 7.47 -2.38 -0.02 2.57 16 13 N -0.70 -17.87 5.35 -440.03 -2.36 -20.22 16 14 C 0.53 19.98 7.85 87.66 0.69 20.67 16 15 O -0.57 -26.64 15.46 -3.03 -0.05 -26.69 16 16 C -0.13 -5.24 6.16 71.24 0.44 -4.80 16 17 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 18 C -0.55 -31.62 9.50 67.96 0.65 -30.97 16 19 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 20 C 0.01 0.80 5.49 84.86 0.47 1.27 16 21 N -0.91 -56.44 13.22 21.65 0.29 -56.15 16 22 Si 1.00 43.88 29.55 68.60 2.03 45.91 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 24 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 26 C -0.17 -3.28 7.50 31.12 0.23 -3.04 16 27 N -0.53 -9.57 10.33 -187.84 -1.94 -11.51 16 28 C 0.13 1.57 11.01 84.70 0.93 2.50 16 29 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.08 -0.01 8.10 -2.39 -0.02 -0.03 16 31 H 0.08 -0.02 8.10 -2.39 -0.02 -0.04 16 32 H 0.19 1.04 8.06 -2.91 -0.02 1.02 16 33 H 0.10 1.56 8.13 -2.38 -0.02 1.54 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.35 5.64 8.19 -89.69 -0.73 4.91 16 36 H 0.10 1.44 8.12 -2.39 -0.02 1.42 16 37 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.42 7.79 8.73 -92.71 -0.81 6.98 16 39 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 40 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 41 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 42 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.09 1.65 7.83 -2.39 -0.02 1.63 16 44 H 0.19 1.09 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -81.77 390.04 -1.84 -83.61 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -0.51 Total: 21.52 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 7.06 Total: -1.39 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -9.21 Total: -113.26 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.05 Total: -26.69 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -81.77 -1.84 -83.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731470708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.735 kcal (2) G-P(sol) polarization free energy of solvation -81.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds