Wall clock time and date at job start Sat Apr 11 2020 04:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.30909 * 121.84367 * 2 1 4 4 S 1.75778 * 109.82139 * 180.02562 * 3 2 1 5 5 C 1.76243 * 90.69847 * 0.02562 * 4 3 2 6 6 N 1.32366 * 141.95047 * 180.37702 * 5 4 3 7 7 C 1.33876 * 109.13530 * 180.02562 * 6 5 4 8 8 C 1.50695 * 125.80293 * 179.86358 * 7 6 5 9 9 C 1.50702 * 109.47265 * 304.68434 * 8 7 6 10 10 O 1.21280 * 119.99885 * 0.02562 * 9 8 7 11 11 N 1.34769 * 119.99882 * 180.02562 * 9 8 7 12 12 C 1.46503 * 119.99831 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47149 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.47250 * 304.99884 * 13 12 11 15 15 C 1.53001 * 109.47347 * 65.00153 * 13 12 11 16 16 C 1.52997 * 109.47049 * 184.99765 * 13 12 11 17 17 N 1.46506 * 109.47289 * 174.99938 * 16 13 12 18 18 C 1.36930 * 120.00258 * 180.02562 * 17 16 13 19 19 H 1.08004 * 119.99823 * 0.02562 * 18 17 16 20 20 C 1.38815 * 120.00439 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99225 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00268 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46935 * 90.00259 * 22 20 18 24 24 H 1.48507 * 109.47218 * 210.00042 * 22 20 18 25 25 H 1.48492 * 109.47204 * 330.00019 * 22 20 18 26 26 C 1.34335 * 108.38618 * 359.59331 * 7 6 5 27 27 N 1.35143 * 109.22594 * 0.02562 * 5 4 3 28 28 H 1.08998 * 109.46585 * 269.97508 * 1 2 3 29 29 H 1.09003 * 109.46558 * 29.97203 * 1 2 3 30 30 H 1.08999 * 109.46932 * 149.97199 * 1 2 3 31 31 H 1.07998 * 125.08763 * 359.97438 * 3 2 1 32 32 H 1.09005 * 109.46678 * 184.68238 * 8 7 6 33 33 H 1.09000 * 109.47402 * 64.69055 * 8 7 6 34 34 H 0.97002 * 120.00609 * 0.02562 * 11 9 8 35 35 H 1.08995 * 109.47509 * 59.99746 * 12 11 9 36 36 H 1.09005 * 109.47035 * 299.99866 * 12 11 9 37 37 H 1.09000 * 109.47757 * 180.02562 * 15 13 12 38 38 H 1.09004 * 109.46683 * 300.00277 * 15 13 12 39 39 H 1.09002 * 109.47620 * 59.99538 * 15 13 12 40 40 H 1.09001 * 109.47289 * 54.99809 * 16 13 12 41 41 H 1.09004 * 109.47261 * 295.00065 * 16 13 12 42 42 H 0.97001 * 119.99251 * 0.02562 * 17 16 13 43 43 H 0.97000 * 119.99950 * 179.97438 * 21 20 18 44 44 H 1.07998 * 126.43674 * 180.22458 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1121 0.0000 4 16 3.9170 0.7459 -0.0007 5 6 3.5709 -0.9822 -0.0018 6 7 4.1661 -2.1644 0.0026 7 6 3.2339 -3.1252 -0.0031 8 6 3.4970 -4.6090 -0.0037 9 6 4.3865 -4.9610 -1.1682 10 8 4.7695 -4.0924 -1.9230 11 7 4.7565 -6.2410 -1.3707 12 6 5.6216 -6.5831 -2.5024 13 6 5.8888 -8.0896 -2.5030 14 1 6.2984 -8.3864 -1.5376 15 6 4.5790 -8.8397 -2.7537 16 6 6.8905 -8.4295 -3.6083 17 7 7.2374 -9.8509 -3.5330 18 6 8.1242 -10.3876 -4.4276 19 1 8.5683 -9.7630 -5.1887 20 6 8.4533 -11.7343 -4.3559 21 7 7.9125 -12.4952 -3.4281 22 14 9.6625 -12.4666 -5.5768 23 1 11.0408 -12.3561 -5.0353 24 1 9.3327 -13.8969 -5.8030 25 1 9.5753 -11.7293 -6.8628 26 6 2.0239 -2.5416 -0.0023 27 7 2.2323 -1.1680 -0.0021 28 1 -0.3632 -0.0004 1.0277 29 1 -0.3632 0.8903 -0.5134 30 1 -0.3633 -0.8897 -0.5143 31 1 1.7746 2.1057 -0.0004 32 1 2.5523 -5.1455 -0.0928 33 1 3.9886 -4.8912 0.9274 34 1 4.4499 -6.9358 -0.7672 35 1 6.5664 -6.0470 -2.4126 36 1 5.1306 -6.3004 -3.4336 37 1 4.7692 -9.9130 -2.7537 38 1 3.8653 -8.5975 -1.9662 39 1 4.1693 -8.5430 -3.7191 40 1 7.7908 -7.8285 -3.4801 41 1 6.4459 -8.2150 -4.5802 42 1 6.8388 -10.4117 -2.8492 43 1 8.1421 -13.4364 -3.3781 44 1 1.0687 -3.0454 -0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753624900.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:39:21 Heat of formation + Delta-G solvation = 63.855374 kcal Electronic energy + Delta-G solvation = -25095.617966 eV Core-core repulsion = 21369.260169 eV Total energy + Delta-G solvation = -3726.357797 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.136 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -42.98466 -39.60394 -37.56477 -36.67968 -34.26333 -32.71608 -32.19831 -31.12132 -30.08625 -29.46803 -27.45933 -26.23293 -25.05746 -23.53198 -22.53840 -21.27228 -20.50087 -20.30506 -19.56668 -18.54763 -17.33871 -16.79999 -16.37556 -16.03722 -15.94604 -15.43732 -14.97003 -14.84109 -14.48199 -14.33100 -14.02208 -13.77255 -13.64195 -13.41956 -13.16921 -13.05436 -12.93179 -12.74038 -12.41172 -12.12074 -11.96110 -11.59837 -11.56519 -11.02613 -10.87339 -10.77466 -10.65956 -10.51419 -10.36845 -10.32219 -10.03761 -9.76782 -9.61888 -9.03837 -8.89684 -8.84372 -7.96426 -6.88919 -5.74308 -3.02298 0.53176 0.58841 1.28105 1.84124 2.14968 2.54571 2.76699 3.35738 3.46243 3.51475 3.53069 3.95399 4.07462 4.38996 4.54137 4.62256 4.72714 4.79824 4.88017 4.93912 5.05908 5.15293 5.17304 5.19963 5.28335 5.36209 5.44717 5.61000 5.74269 5.87764 6.01814 6.07892 6.13528 6.19164 6.30065 6.44032 6.51081 6.59358 6.69539 6.82499 6.91966 7.50016 7.60629 7.73598 8.35670 8.45028 9.56257 10.13964 10.48988 11.48763 Molecular weight = 336.14amu Principal moments of inertia in cm(-1) A = 0.034264 B = 0.001618 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.988989 B =17299.384619 C =17765.797542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.082 3.918 3 C -0.234 4.234 4 S 0.185 5.815 5 C 0.138 3.862 6 N -0.425 5.425 7 C 0.068 3.932 8 C -0.058 4.058 9 C 0.512 3.488 10 O -0.522 6.522 11 N -0.728 5.728 12 C 0.129 3.871 13 C -0.110 4.110 14 H 0.076 0.924 15 C -0.141 4.141 16 C 0.160 3.840 17 N -0.731 5.731 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.935 5.935 22 Si 0.908 3.092 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.049 4.049 27 N -0.405 5.405 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.194 0.806 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.399 0.601 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.042 0.958 39 H 0.052 0.948 40 H 0.021 0.979 41 H 0.022 0.978 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.236 27.512 12.498 36.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.029 4.029 3 C -0.371 4.371 4 S 0.436 5.564 5 C -0.228 4.228 6 N -0.147 5.147 7 C -0.064 4.064 8 C -0.099 4.099 9 C 0.297 3.703 10 O -0.397 6.397 11 N -0.381 5.381 12 C 0.005 3.995 13 C -0.129 4.129 14 H 0.095 0.905 15 C -0.198 4.198 16 C 0.032 3.968 17 N -0.375 5.375 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.584 5.584 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.181 4.181 27 N -0.085 5.085 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.211 0.789 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.234 0.766 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.039 0.961 41 H 0.040 0.960 42 H 0.218 0.782 43 H 0.064 0.936 44 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -17.861 28.794 11.787 35.876 hybrid contribution -1.635 -1.733 -0.176 2.389 sum -19.496 27.061 11.612 35.316 Atomic orbital electron populations 1.20679 0.86455 1.04561 1.03884 1.19033 0.96080 0.83295 1.04472 1.24813 0.97052 1.01899 1.13323 1.84810 1.02010 0.87748 1.81854 1.26217 0.82933 1.01520 1.12145 1.70529 1.30981 0.94308 1.18889 1.19943 0.88140 0.94657 1.03678 1.19976 1.01370 0.89310 0.99255 1.20262 0.81328 0.82473 0.86251 1.90754 1.54727 1.47564 1.46687 1.46027 1.52283 1.08474 1.31324 1.21372 0.94082 0.95458 0.88607 1.21544 0.97399 0.92696 1.01271 0.90532 1.21786 0.95674 1.01760 1.00590 1.20584 0.94142 0.87584 0.94527 1.42337 1.52963 1.03907 1.38307 1.19253 1.16974 0.92576 1.08106 0.91159 1.24730 1.00792 0.96407 0.99154 1.69657 1.47213 1.05892 1.35604 0.86175 0.80946 0.78326 0.80676 1.21746 1.21807 1.20779 1.22391 1.00923 0.78910 1.15884 1.43752 1.07226 1.05784 1.51770 0.89735 0.89135 0.90592 0.78866 0.87200 0.87121 0.76641 0.91468 0.91565 0.91227 0.93874 0.92902 0.96113 0.96038 0.78220 0.93578 0.80019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.32 10.21 36.01 0.37 0.05 16 2 C 0.08 0.58 6.75 -81.75 -0.55 0.03 16 3 C -0.23 -1.38 10.80 29.04 0.31 -1.07 16 4 S 0.18 1.64 23.37 -107.50 -2.51 -0.87 16 5 C 0.14 1.77 8.92 -88.71 -0.79 0.98 16 6 N -0.42 -6.44 10.70 -9.77 -0.10 -6.54 16 7 C 0.07 0.82 5.83 -83.08 -0.48 0.34 16 8 C -0.06 -0.54 6.26 -29.04 -0.18 -0.72 16 9 C 0.51 6.87 7.82 -10.99 -0.09 6.78 16 10 O -0.52 -9.60 15.57 5.56 0.09 -9.51 16 11 N -0.73 -8.70 5.28 -60.29 -0.32 -9.02 16 12 C 0.13 1.86 5.06 -4.04 -0.02 1.84 16 13 C -0.11 -1.73 2.46 -90.62 -0.22 -1.95 16 14 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 15 C -0.14 -2.08 8.94 37.16 0.33 -1.75 16 16 C 0.16 3.26 5.65 -4.04 -0.02 3.23 16 17 N -0.73 -18.57 5.33 -59.90 -0.32 -18.89 16 18 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 19 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 20 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 21 N -0.93 -28.34 13.06 55.49 0.72 -27.61 16 22 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 C -0.05 -0.48 11.85 -15.71 -0.19 -0.66 16 27 N -0.41 -4.19 3.19 -59.54 -0.19 -4.38 16 28 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 0.13 8.10 -51.93 -0.42 -0.29 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.19 0.41 8.06 -52.49 -0.42 -0.01 16 32 H 0.11 0.61 8.10 -51.93 -0.42 0.19 16 33 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.40 3.63 7.65 -40.82 -0.31 3.32 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 1.21 7.18 -51.93 -0.37 0.83 16 38 H 0.04 0.50 7.18 -51.93 -0.37 0.13 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.38 10.09 6.85 -40.82 -0.28 9.81 16 43 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 384.02 15.07 5.79 5.79 Total: -1.00 -38.22 384.02 -10.03 -48.24 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -6.38 Total: 5.46 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -1.78 Total: -0.35 kcal Atomic # 7 Polarization: -66.22 SS G_CDS: -0.21 Total: -66.43 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.51 Total: -0.87 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.22 -10.03 -48.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753624900.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.098 kcal (2) G-P(sol) polarization free energy of solvation -38.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds