Wall clock time and date at job start Sat Apr 11 2020 04:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.30920 * 121.83773 * 2 1 4 4 S 1.75783 * 109.81803 * 180.02562 * 3 2 1 5 5 C 1.76248 * 90.69899 * 359.97438 * 4 3 2 6 6 N 1.32359 * 141.94738 * 180.37500 * 5 4 3 7 7 C 1.33878 * 109.13225 * 180.02562 * 6 5 4 8 8 C 1.50703 * 125.80171 * 179.86318 * 7 6 5 9 9 C 1.50700 * 109.47148 * 304.68803 * 8 7 6 10 10 O 1.21283 * 119.99803 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99675 * 180.28037 * 9 8 7 12 12 C 1.46497 * 119.99525 * 179.72583 * 11 9 8 13 13 C 1.52999 * 109.46992 * 179.97438 * 12 11 9 14 14 H 1.08999 * 109.47090 * 54.99784 * 13 12 11 15 15 C 1.53005 * 109.47116 * 294.99847 * 13 12 11 16 16 C 1.52999 * 109.47323 * 175.00101 * 13 12 11 17 17 N 1.46503 * 109.47180 * 185.00168 * 16 13 12 18 18 C 1.36935 * 119.99772 * 179.97438 * 17 16 13 19 19 H 1.08000 * 120.00263 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99936 * 179.97438 * 18 17 16 21 21 N 1.31615 * 119.99915 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00132 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47121 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47362 * 120.00284 * 22 20 18 25 25 H 1.48507 * 109.46904 * 240.00034 * 22 20 18 26 26 C 1.34339 * 108.38860 * 359.59721 * 7 6 5 27 27 N 1.35142 * 109.22433 * 359.97438 * 5 4 3 28 28 H 1.08997 * 109.47340 * 269.97171 * 1 2 3 29 29 H 1.09004 * 109.47572 * 29.97841 * 1 2 3 30 30 H 1.09006 * 109.46702 * 149.97642 * 1 2 3 31 31 H 1.08000 * 125.08779 * 359.97438 * 3 2 1 32 32 H 1.09009 * 109.46601 * 184.68825 * 8 7 6 33 33 H 1.08998 * 109.47035 * 64.69332 * 8 7 6 34 34 H 0.97000 * 119.99894 * 359.71837 * 11 9 8 35 35 H 1.08995 * 109.47421 * 299.99467 * 12 11 9 36 36 H 1.09001 * 109.47621 * 60.00103 * 12 11 9 37 37 H 1.09001 * 109.46899 * 179.97438 * 15 13 12 38 38 H 1.08999 * 109.47089 * 299.99937 * 15 13 12 39 39 H 1.09001 * 109.46783 * 60.00198 * 15 13 12 40 40 H 1.08999 * 109.46816 * 304.99840 * 16 13 12 41 41 H 1.09001 * 109.47584 * 64.99781 * 16 13 12 42 42 H 0.96993 * 119.99976 * 359.97438 * 17 16 13 43 43 H 0.97004 * 120.00367 * 179.97438 * 21 20 18 44 44 H 1.07994 * 126.43439 * 180.22353 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1122 0.0000 4 16 3.9169 0.7462 -0.0007 5 6 3.5709 -0.9820 -0.0002 6 7 4.1663 -2.1642 0.0051 7 6 3.2340 -3.1250 0.0004 8 6 3.4973 -4.6088 0.0010 9 6 4.3867 -4.9617 -1.1633 10 8 4.7694 -4.0937 -1.9189 11 7 4.7525 -6.2427 -1.3677 12 6 5.6121 -6.5865 -2.5031 13 6 5.8753 -8.0937 -2.5053 14 1 4.9255 -8.6284 -2.5017 15 6 6.6789 -8.4730 -1.2597 16 6 6.6683 -8.4711 -3.7582 17 7 6.8173 -9.9272 -3.8216 18 6 7.4958 -10.5012 -4.8634 19 1 7.9214 -9.8806 -5.6380 20 6 7.6375 -11.8808 -4.9232 21 7 7.1202 -12.6371 -3.9784 22 14 8.5637 -12.6639 -6.3440 23 1 9.0443 -11.6036 -7.2659 24 1 9.7241 -13.4266 -5.8180 25 1 7.6581 -13.5841 -7.0779 26 6 2.0240 -2.5414 0.0009 27 7 2.2323 -1.1679 0.0010 28 1 -0.3634 -0.0005 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.7743 2.1058 -0.0004 32 1 2.5526 -5.1455 -0.0875 33 1 3.9890 -4.8902 0.9323 34 1 4.4466 -6.9368 -0.7631 35 1 5.1180 -6.3023 -3.4321 36 1 6.5586 -6.0529 -2.4169 37 1 6.8660 -9.5468 -1.2611 38 1 7.6287 -7.9382 -1.2634 39 1 6.1140 -8.2041 -0.3672 40 1 6.1371 -8.1214 -4.6434 41 1 7.6535 -8.0064 -3.7184 42 1 6.4355 -10.4845 -3.1257 43 1 7.2189 -13.6012 -4.0204 44 1 1.0689 -3.0454 0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753624901.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:36:05 Heat of formation + Delta-G solvation = 63.697304 kcal Electronic energy + Delta-G solvation = -25094.347287 eV Core-core repulsion = 21367.982635 eV Total energy + Delta-G solvation = -3726.364652 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.136 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -42.98479 -39.60333 -37.56400 -36.67909 -34.26602 -32.71607 -32.19815 -31.12168 -30.08715 -29.46632 -27.45791 -26.22564 -25.06057 -23.53218 -22.54207 -21.27292 -20.50063 -20.30336 -19.56825 -18.54707 -17.33716 -16.79691 -16.39029 -16.05637 -15.88513 -15.45716 -15.09952 -14.69940 -14.50152 -14.33815 -14.02165 -13.74226 -13.62856 -13.48296 -13.16715 -12.99794 -12.91020 -12.81444 -12.39699 -12.10213 -11.95545 -11.60341 -11.56660 -11.02567 -10.88716 -10.77537 -10.65852 -10.51707 -10.36213 -10.32152 -10.01109 -9.76986 -9.62509 -9.03784 -8.89738 -8.85333 -7.96455 -6.89244 -5.74852 -3.02825 0.53144 0.58754 1.28005 1.84139 2.15059 2.54407 2.76758 3.35611 3.45339 3.51408 3.53508 3.95525 4.07467 4.39135 4.54333 4.61825 4.72774 4.80087 4.88036 4.94346 5.06065 5.15176 5.17730 5.19624 5.28723 5.36197 5.45057 5.60670 5.74317 5.88988 6.03694 6.06560 6.13484 6.19055 6.31082 6.45244 6.51105 6.59378 6.70152 6.82261 6.92165 7.49853 7.60551 7.73743 8.35609 8.44462 9.55807 10.13551 10.48520 11.48270 Molecular weight = 336.14amu Principal moments of inertia in cm(-1) A = 0.033451 B = 0.001607 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.841476 B =17414.644625 C =17616.022362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.082 3.918 3 C -0.234 4.234 4 S 0.184 5.816 5 C 0.138 3.862 6 N -0.425 5.425 7 C 0.068 3.932 8 C -0.058 4.058 9 C 0.512 3.488 10 O -0.522 6.522 11 N -0.728 5.728 12 C 0.128 3.872 13 C -0.110 4.110 14 H 0.076 0.924 15 C -0.141 4.141 16 C 0.160 3.840 17 N -0.731 5.731 18 C -0.237 4.237 19 H 0.071 0.929 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.049 4.049 27 N -0.405 5.405 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.194 0.806 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.399 0.601 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.043 0.957 40 H 0.021 0.979 41 H 0.022 0.978 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.141 28.105 14.665 36.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.029 4.029 3 C -0.371 4.371 4 S 0.435 5.565 5 C -0.228 4.228 6 N -0.147 5.147 7 C -0.064 4.064 8 C -0.099 4.099 9 C 0.297 3.703 10 O -0.397 6.397 11 N -0.381 5.381 12 C 0.005 3.995 13 C -0.129 4.129 14 H 0.094 0.906 15 C -0.199 4.199 16 C 0.032 3.968 17 N -0.375 5.375 18 C -0.368 4.368 19 H 0.089 0.911 20 C -0.211 4.211 21 N -0.584 5.584 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.181 4.181 27 N -0.085 5.085 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.211 0.789 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.234 0.766 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.038 0.962 41 H 0.040 0.960 42 H 0.218 0.782 43 H 0.064 0.936 44 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -14.777 29.393 13.943 35.731 hybrid contribution -1.826 -1.778 -0.301 2.567 sum -16.603 27.615 13.642 34.991 Atomic orbital electron populations 1.20679 0.86451 1.04575 1.03886 1.19034 0.96083 0.83295 1.04447 1.24816 0.97035 1.01896 1.13338 1.84805 1.02033 0.87752 1.81875 1.26214 0.82936 1.01514 1.12151 1.70525 1.30981 0.94305 1.18905 1.19946 0.88142 0.94655 1.03692 1.19978 1.01379 0.89309 0.99241 1.20265 0.81294 0.82480 0.86275 1.90755 1.54670 1.47640 1.46663 1.46027 1.52508 1.08435 1.31140 1.21371 0.94243 0.95498 0.88415 1.21543 1.00342 0.93438 0.97552 0.90588 1.21789 0.99477 1.02951 0.95640 1.20584 0.96168 0.86980 0.93107 1.42345 1.66543 0.99944 1.28697 1.19302 1.26416 0.90157 1.00961 0.91096 1.24732 1.01567 0.96159 0.98654 1.69666 1.50341 1.04078 1.34270 0.86108 0.79140 0.79195 0.81722 1.20552 1.21893 1.21916 1.22396 1.00935 0.78908 1.15842 1.43749 1.07227 1.05787 1.51769 0.89735 0.89128 0.90582 0.78864 0.87177 0.87144 0.76640 0.91575 0.91460 0.91237 0.92836 0.93844 0.96159 0.95987 0.78220 0.93623 0.80008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.32 10.20 36.00 0.37 0.05 16 2 C 0.08 0.58 6.75 -81.76 -0.55 0.03 16 3 C -0.23 -1.38 10.80 29.04 0.31 -1.07 16 4 S 0.18 1.63 23.37 -107.50 -2.51 -0.88 16 5 C 0.14 1.76 8.92 -88.71 -0.79 0.97 16 6 N -0.42 -6.41 10.70 -9.77 -0.10 -6.52 16 7 C 0.07 0.82 5.83 -83.07 -0.48 0.33 16 8 C -0.06 -0.54 6.26 -29.03 -0.18 -0.72 16 9 C 0.51 6.87 7.82 -10.98 -0.09 6.78 16 10 O -0.52 -9.59 15.57 5.55 0.09 -9.51 16 11 N -0.73 -8.69 5.28 -60.30 -0.32 -9.01 16 12 C 0.13 1.86 5.06 -4.04 -0.02 1.84 16 13 C -0.11 -1.72 2.46 -90.62 -0.22 -1.95 16 14 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 15 C -0.14 -2.13 8.94 37.16 0.33 -1.80 16 16 C 0.16 3.25 5.65 -4.04 -0.02 3.23 16 17 N -0.73 -18.54 5.33 -59.91 -0.32 -18.86 16 18 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 19 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 20 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 21 N -0.93 -28.32 13.06 55.49 0.72 -27.59 16 22 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 26 C -0.05 -0.47 11.85 -15.71 -0.19 -0.66 16 27 N -0.41 -4.19 3.19 -59.54 -0.19 -4.38 16 28 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 0.13 8.10 -51.93 -0.42 -0.29 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.19 0.42 8.06 -52.49 -0.42 -0.01 16 32 H 0.11 0.62 8.10 -51.92 -0.42 0.20 16 33 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.40 3.63 7.66 -40.82 -0.31 3.31 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.22 7.18 -51.93 -0.37 0.84 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.04 0.52 7.18 -51.93 -0.37 0.15 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.38 10.08 6.85 -40.82 -0.28 9.80 16 43 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.18 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 384.03 15.07 5.79 5.79 Total: -1.00 -38.19 384.03 -10.03 -48.22 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -6.38 Total: 5.49 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -1.78 Total: -0.39 kcal Atomic # 7 Polarization: -66.16 SS G_CDS: -0.21 Total: -66.37 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.51 Total: -0.88 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.19 -10.03 -48.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753624901.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.916 kcal (2) G-P(sol) polarization free energy of solvation -38.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds