Wall clock time and date at job start Sat Apr 11 2020 04:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.58970 * 2 1 4 4 C 1.53194 * 109.58759 * 120.42777 * 2 1 3 5 5 C 1.53034 * 109.31165 * 65.15589 * 4 2 1 6 6 H 1.09003 * 109.44783 * 301.34961 * 5 4 2 7 7 N 1.46506 * 109.46095 * 181.38457 * 5 4 2 8 8 C 1.36936 * 119.99902 * 154.92617 * 7 5 4 9 9 H 1.07989 * 120.00279 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99577 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99958 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 120.00193 * 0.02562 * 10 8 7 13 13 H 1.48496 * 109.47031 * 90.00148 * 12 10 8 14 14 H 1.48504 * 109.47009 * 210.00268 * 12 10 8 15 15 H 1.48504 * 109.46973 * 329.99979 * 12 10 8 16 16 C 1.53042 * 109.54281 * 61.36460 * 5 4 2 17 17 C 1.53193 * 109.31086 * 298.63504 * 16 5 4 18 18 N 1.46924 * 108.77395 * 54.63212 * 17 16 5 19 19 C 1.34778 * 120.62966 * 126.41436 * 18 17 16 20 20 O 1.21277 * 120.00137 * 179.97438 * 19 18 17 21 21 C 1.50700 * 120.00084 * 359.97438 * 19 18 17 22 22 C 1.50703 * 109.47424 * 180.02562 * 21 19 18 23 23 C 1.38255 * 119.99144 * 89.99952 * 22 21 19 24 24 C 1.38219 * 120.02610 * 179.97438 * 23 22 21 25 25 C 1.38241 * 120.01209 * 0.02562 * 24 23 22 26 26 C 1.38323 * 119.98591 * 0.02562 * 25 24 23 27 27 Cl 1.73605 * 120.01308 * 180.02562 * 26 25 24 28 28 C 1.38196 * 119.98936 * 269.72392 * 22 21 19 29 29 H 1.09001 * 109.47367 * 180.28361 * 1 2 3 30 30 H 1.09003 * 109.47462 * 300.27769 * 1 2 3 31 31 H 1.08995 * 109.47373 * 60.28415 * 1 2 3 32 32 H 1.08995 * 109.49611 * 305.20067 * 4 2 1 33 33 H 1.09007 * 109.49479 * 185.10512 * 4 2 1 34 34 H 0.96996 * 119.99678 * 334.93429 * 7 5 4 35 35 H 0.97000 * 119.99878 * 180.02562 * 11 10 8 36 36 H 1.09000 * 109.49903 * 58.58225 * 16 5 4 37 37 H 1.08995 * 109.49851 * 178.65512 * 16 5 4 38 38 H 1.08999 * 109.58588 * 174.41997 * 17 16 5 39 39 H 1.09000 * 109.58906 * 294.84638 * 17 16 5 40 40 H 1.09004 * 109.47280 * 300.00346 * 21 19 18 41 41 H 1.09001 * 109.46967 * 60.00118 * 21 19 18 42 42 H 1.08000 * 119.99382 * 359.97438 * 23 22 21 43 43 H 1.07999 * 119.99832 * 180.02562 * 24 23 22 44 44 H 1.08002 * 120.00496 * 180.02562 * 25 24 23 45 45 H 1.07997 * 120.01015 * 0.02562 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 1.2445 5 6 1.6415 -2.2055 1.1673 6 1 0.5565 -2.2827 1.0963 7 7 2.1024 -2.9008 2.3717 8 6 1.4641 -4.0367 2.7931 9 1 0.6213 -4.4202 2.2374 10 6 1.9006 -4.6951 3.9345 11 7 1.2875 -5.7872 4.3393 12 14 3.3581 -4.0313 4.8961 13 1 2.8771 -3.0799 5.9298 14 1 4.0719 -5.1561 5.5523 15 1 4.2839 -3.3303 3.9704 16 6 2.2801 -2.8463 -0.0671 17 6 1.7692 -2.1393 -1.3265 18 7 2.0225 -0.6980 -1.1954 19 6 2.6936 -0.0288 -2.1536 20 8 2.8959 1.1609 -2.0339 21 6 3.1925 -0.7589 -3.3739 22 6 3.9047 0.2096 -4.2827 23 6 5.2633 0.4213 -4.1384 24 6 5.9173 1.3091 -4.9719 25 6 5.2130 1.9862 -5.9499 26 6 3.8535 1.7756 -6.0940 27 17 2.9686 2.6251 -7.3225 28 6 3.2006 0.8816 -5.2637 29 1 -0.3634 -1.0276 0.0051 30 1 -0.3634 0.5181 0.8875 31 1 -0.3634 0.5094 -0.8925 32 1 1.6075 -0.2811 2.1364 33 1 3.1297 -0.6519 1.2905 34 1 2.8596 -2.5565 2.8706 35 1 1.5923 -6.2471 5.1372 36 1 3.3640 -2.7473 -0.0088 37 1 2.0128 -3.9022 -0.1084 38 1 2.2944 -2.5247 -2.2004 39 1 0.6987 -2.3138 -1.4347 40 1 3.8827 -1.5458 -3.0697 41 1 2.3483 -1.2008 -3.9033 42 1 5.8139 -0.1071 -3.3742 43 1 6.9786 1.4738 -4.8590 44 1 5.7242 2.6796 -6.6014 45 1 2.1401 0.7131 -5.3790 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044729310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:37:10 Heat of formation + Delta-G solvation = -8.835421 kcal Electronic energy + Delta-G solvation = -26517.211430 eV Core-core repulsion = 22753.365066 eV Total energy + Delta-G solvation = -3763.846364 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.58355 -39.44530 -37.69284 -36.71282 -34.72982 -33.47418 -32.23464 -31.87822 -31.01127 -29.90759 -27.95493 -27.42665 -24.27492 -23.02884 -22.94986 -22.57060 -21.36506 -20.34457 -18.55553 -17.60330 -17.26276 -17.10980 -16.13338 -15.90547 -15.52287 -15.13793 -14.95888 -14.18349 -14.07577 -13.98018 -13.82485 -13.63973 -13.61450 -13.24665 -13.06849 -12.83515 -12.63410 -12.24299 -12.06463 -11.89768 -11.78192 -11.68903 -11.62033 -11.46367 -11.10944 -11.07445 -10.99405 -10.88002 -10.59200 -10.26247 -9.87670 -9.76603 -9.63868 -9.16560 -8.97997 -8.92406 -8.58585 -7.33809 -5.82791 -3.18734 0.87895 0.97465 1.84706 2.59620 2.93233 3.33385 3.36701 3.40316 3.41809 4.27115 4.48677 4.52302 4.54036 4.72433 4.87271 4.91506 4.97238 5.03196 5.07758 5.12055 5.19964 5.23113 5.35935 5.44420 5.49666 5.51271 5.58938 5.65360 5.69756 5.76298 5.90832 5.96307 6.00256 6.02371 6.15654 6.19225 6.20832 6.32125 6.35196 6.48653 6.52991 6.76371 6.89292 7.43721 7.92539 8.15934 8.36276 9.14419 9.87342 10.06959 11.35319 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.023932 B = 0.002297 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.706032 B =12187.863349 C =12603.300532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.095 0.905 4 C -0.137 4.137 5 C 0.183 3.817 6 H 0.060 0.940 7 N -0.748 5.748 8 C -0.244 4.244 9 H 0.090 0.910 10 C 0.005 3.995 11 N -0.933 5.933 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.278 1.278 16 C -0.152 4.152 17 C 0.105 3.895 18 N -0.602 5.602 19 C 0.517 3.483 20 O -0.540 6.540 21 C -0.105 4.105 22 C -0.049 4.049 23 C -0.100 4.100 24 C -0.106 4.106 25 C -0.114 4.114 26 C -0.033 4.033 27 Cl -0.075 7.075 28 C -0.096 4.096 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.361 0.639 35 H 0.260 0.740 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.128 0.872 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.201 13.591 -21.720 26.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.113 0.887 4 C -0.176 4.176 5 C 0.074 3.926 6 H 0.078 0.922 7 N -0.390 5.390 8 C -0.374 4.374 9 H 0.108 0.892 10 C -0.191 4.191 11 N -0.580 5.580 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.218 1.218 15 H -0.204 1.204 16 C -0.193 4.193 17 C -0.019 4.019 18 N -0.335 5.335 19 C 0.304 3.696 20 O -0.418 6.418 21 C -0.144 4.144 22 C -0.049 4.049 23 C -0.118 4.118 24 C -0.124 4.124 25 C -0.132 4.132 26 C -0.059 4.059 27 Cl -0.046 7.046 28 C -0.115 4.115 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.193 0.807 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.146 0.854 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.054 14.083 -21.706 26.363 hybrid contribution 0.982 0.247 0.741 1.255 sum 6.036 14.330 -20.965 26.102 Atomic orbital electron populations 1.22145 0.94890 1.02904 1.01984 1.21151 0.94128 0.97068 0.83732 0.88651 1.22253 1.01199 0.97279 0.96877 1.20172 0.97431 0.88743 0.86294 0.92190 1.42808 1.37454 1.30516 1.28241 1.19047 1.11123 0.99860 1.07369 0.89186 1.24678 0.98938 0.97242 0.98231 1.69698 1.42737 1.19447 1.26151 0.86563 0.83476 0.78124 0.80401 1.21084 1.21778 1.20385 1.22644 1.00985 1.00923 0.94733 1.21885 1.01259 0.79159 0.99562 1.48266 1.55226 1.09628 1.20397 1.20368 0.77901 0.87437 0.83852 1.90705 1.57296 1.15155 1.78616 1.20750 1.01814 0.97831 0.94023 1.19257 0.93640 0.97082 0.94950 1.21129 0.93933 0.98066 0.98687 1.21073 1.00196 0.96193 0.94932 1.21034 0.92169 1.00609 0.99437 1.20846 0.92764 0.98106 0.94204 1.98369 1.75970 1.76672 1.53609 1.20863 1.00160 0.95714 0.94768 0.91512 0.91332 0.92822 0.90502 0.92009 0.80678 0.93033 0.92303 0.90122 0.90325 0.91123 0.87418 0.87668 0.85428 0.85024 0.85089 0.85134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.03 37.15 0.34 -1.58 16 2 C 0.14 1.88 3.21 -67.60 -0.22 1.67 16 3 H 0.10 1.36 7.00 -51.93 -0.36 1.00 16 4 C -0.14 -2.05 5.02 -26.61 -0.13 -2.18 16 5 C 0.18 3.17 2.52 -67.89 -0.17 3.00 16 6 H 0.06 1.08 6.43 -51.93 -0.33 0.74 16 7 N -0.75 -16.65 4.92 -53.38 -0.26 -16.91 16 8 C -0.24 -6.53 10.41 -15.06 -0.16 -6.69 16 9 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 10 C 0.01 0.14 5.50 -17.43 -0.10 0.05 16 11 N -0.93 -28.50 13.97 55.49 0.78 -27.72 16 12 Si 0.88 21.60 27.74 -169.99 -4.71 16.88 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 15 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 16 C -0.15 -2.26 5.66 -26.61 -0.15 -2.41 16 17 C 0.10 1.16 5.93 -3.71 -0.02 1.14 16 18 N -0.60 -7.41 2.68 -165.22 -0.44 -7.85 16 19 C 0.52 6.53 7.69 -10.98 -0.08 6.45 16 20 O -0.54 -8.76 15.45 5.56 0.09 -8.67 16 21 C -0.10 -0.95 4.18 -29.03 -0.12 -1.07 16 22 C -0.05 -0.49 4.37 -104.63 -0.46 -0.95 16 23 C -0.10 -0.95 9.70 -39.58 -0.38 -1.33 16 24 C -0.11 -0.90 10.05 -39.59 -0.40 -1.30 16 25 C -0.11 -1.01 9.83 -39.55 -0.39 -1.40 16 26 C -0.03 -0.33 6.32 -39.50 -0.25 -0.58 16 27 Cl -0.08 -0.70 28.96 -51.86 -1.50 -2.20 16 28 C -0.10 -0.98 9.49 -39.54 -0.38 -1.36 16 29 H 0.07 0.81 5.72 -51.93 -0.30 0.52 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.36 8.05 5.66 -40.82 -0.23 7.82 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.08 0.67 5.93 -51.93 -0.31 0.36 16 39 H 0.07 0.74 7.50 -51.93 -0.39 0.36 16 40 H 0.11 0.80 7.64 -51.93 -0.40 0.41 16 41 H 0.11 0.73 7.88 -51.93 -0.41 0.33 16 42 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 43 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 45 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 374.56 15.07 5.64 5.64 Total: -1.00 -32.41 374.56 -10.04 -42.44 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.55 Total: 6.93 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -3.07 Total: -8.54 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: 0.07 Total: -52.48 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.88 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.41 -10.04 -42.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044729310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.606 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds