Wall clock time and date at job start Sat Apr 11 2020 04:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46966 * 2 1 4 4 C 1.50708 * 109.46817 * 240.00184 * 2 1 3 5 5 O 1.21283 * 119.99493 * 240.00159 * 4 2 1 6 6 N 1.34767 * 119.99837 * 60.00125 * 4 2 1 7 7 C 1.46506 * 119.99860 * 180.02562 * 6 4 2 8 8 H 1.09000 * 110.64336 * 31.85249 * 7 6 4 9 9 C 1.54337 * 110.84637 * 268.69280 * 7 6 4 10 10 N 1.47026 * 107.26213 * 219.67178 * 9 7 6 11 11 C 1.36941 * 125.64734 * 178.85056 * 10 9 7 12 12 H 1.07994 * 120.00099 * 186.33843 * 11 10 9 13 13 C 1.38811 * 119.99936 * 6.33599 * 11 10 9 14 14 N 1.31620 * 120.00033 * 7.37967 * 13 11 10 15 15 Si 1.86800 * 119.99953 * 187.38294 * 13 11 10 16 16 H 1.48497 * 109.47048 * 265.01662 * 15 13 11 17 17 H 1.48503 * 109.46983 * 25.02026 * 15 13 11 18 18 H 1.48508 * 109.46948 * 145.01930 * 15 13 11 19 19 C 1.47424 * 108.70441 * 358.58408 * 10 9 7 20 20 C 1.54911 * 104.83035 * 24.35748 * 19 10 9 21 21 H 1.09001 * 111.00529 * 81.10474 * 20 19 10 22 22 C 1.53002 * 111.00005 * 204.91666 * 20 19 10 23 23 C 1.50693 * 109.47231 * 120.00263 * 2 1 3 24 24 C 1.38245 * 119.98847 * 59.72274 * 23 2 1 25 25 C 1.38217 * 120.01016 * 179.72624 * 24 23 2 26 26 C 1.38347 * 119.98778 * 0.55032 * 25 24 23 27 27 Cl 1.73602 * 120.01218 * 179.70702 * 26 25 24 28 28 C 1.38351 * 119.97538 * 359.72501 * 26 25 24 29 29 C 1.38208 * 119.98597 * 359.97438 * 28 26 25 30 30 H 1.08998 * 109.46966 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46607 * 300.00210 * 1 2 3 32 32 H 1.08996 * 109.46886 * 59.99804 * 1 2 3 33 33 H 0.97001 * 120.00853 * 359.97438 * 6 4 2 34 34 H 1.08997 * 109.99248 * 100.19709 * 9 7 6 35 35 H 1.08999 * 109.78076 * 339.02299 * 9 7 6 36 36 H 0.96999 * 119.99785 * 179.97438 * 14 13 11 37 37 H 1.09000 * 110.36704 * 143.19846 * 19 10 9 38 38 H 1.09000 * 110.36545 * 265.40681 * 19 10 9 39 39 H 1.09002 * 109.47335 * 58.54911 * 22 20 19 40 40 H 1.09008 * 109.46848 * 178.54771 * 22 20 19 41 41 H 1.08996 * 109.47314 * 298.54346 * 22 20 19 42 42 H 1.07992 * 119.99156 * 0.02562 * 24 23 2 43 43 H 1.08004 * 120.00255 * 180.27622 * 25 24 23 44 44 H 1.07998 * 120.01012 * 180.02562 * 28 26 25 45 45 H 1.08007 * 119.99604 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.7296 -1.6965 -1.1193 6 7 1.7067 -0.2499 -2.4546 7 6 2.1945 -0.9408 -3.6508 8 1 2.2911 -2.0104 -3.4643 9 6 3.5396 -0.3459 -4.1186 10 7 3.5073 -0.2960 -5.5876 11 6 4.5040 0.1890 -6.3918 12 1 4.3442 0.2770 -7.4562 13 6 5.7196 0.5674 -5.8388 14 7 5.9684 0.3266 -4.5689 15 14 7.0024 1.4186 -6.8968 16 1 7.9582 0.4110 -7.4225 17 1 6.3326 2.1047 -8.0308 18 1 7.7362 2.4169 -6.0779 19 6 2.2269 -0.8604 -6.0518 20 6 1.2567 -0.6766 -4.8582 21 1 0.8593 0.3381 -4.8304 22 6 0.1246 -1.7046 -4.9085 23 6 2.0324 -0.7104 1.2304 24 6 1.6936 -2.0323 1.4517 25 6 2.1587 -2.6860 2.5772 26 6 2.9541 -2.0139 3.4880 27 17 3.5324 -2.8322 4.9057 28 6 3.2882 -0.6894 3.2689 29 6 2.8276 -0.0385 2.1400 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.1488 0.5386 -2.5436 34 1 4.3625 -0.9792 -3.7872 35 1 3.6579 0.6601 -3.7160 36 1 6.8180 0.5908 -4.1826 37 1 1.8649 -0.3139 -6.9226 38 1 2.3425 -1.9178 -6.2896 39 1 0.5456 -2.7099 -4.8922 40 1 -0.5274 -1.5696 -4.0454 41 1 -0.4511 -1.5666 -5.8237 42 1 1.0693 -2.5556 0.7427 43 1 1.8976 -3.7200 2.7478 44 1 3.9094 -0.1643 3.9793 45 1 3.0880 0.9956 1.9689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080378708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:37:58 Heat of formation + Delta-G solvation = -22.412635 kcal Electronic energy + Delta-G solvation = -26719.378722 eV Core-core repulsion = 22954.943606 eV Total energy + Delta-G solvation = -3764.435116 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.43612 -40.13397 -39.00938 -37.47174 -35.61922 -35.06355 -34.08736 -32.16943 -32.03495 -30.40222 -29.25906 -27.38009 -25.92178 -25.08132 -23.82790 -23.12109 -21.88526 -21.53917 -20.60192 -18.89142 -18.23288 -17.95212 -17.42915 -16.97617 -16.56186 -16.17793 -15.73409 -15.49422 -15.34784 -14.78129 -14.72017 -14.52952 -14.40220 -14.22188 -14.06597 -13.80949 -13.50263 -13.38441 -13.21339 -13.08479 -12.80871 -12.76658 -12.60649 -12.44284 -12.20827 -12.18518 -12.01584 -11.99052 -11.84722 -11.73871 -11.62801 -11.45876 -10.76903 -10.71468 -9.98627 -9.91794 -9.54606 -8.91779 -7.84075 -5.24441 0.13246 0.36255 1.14114 1.44105 1.45970 1.55685 1.71356 2.19143 2.48977 2.72754 3.31948 3.52885 3.59460 3.72443 3.78646 3.95618 3.98929 4.06781 4.12997 4.20274 4.29323 4.41410 4.52144 4.52331 4.63556 4.73401 4.74586 4.88609 4.88885 4.94125 5.01330 5.07816 5.08931 5.22454 5.22956 5.25871 5.27746 5.32541 5.47667 5.50617 5.57297 5.69770 5.76509 5.83775 6.17279 6.65977 7.05664 7.36446 7.75465 8.39349 9.23160 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.013092 B = 0.002813 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.167544 B = 9951.735272 C =11353.540340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.065 4.065 3 H 0.125 0.875 4 C 0.512 3.488 5 O -0.579 6.579 6 N -0.700 5.700 7 C 0.139 3.861 8 H 0.070 0.930 9 C 0.183 3.817 10 N -0.626 5.626 11 C -0.242 4.242 12 H 0.087 0.913 13 C -0.070 4.070 14 N -0.951 5.951 15 Si 0.979 3.021 16 H -0.289 1.289 17 H -0.263 1.263 18 H -0.295 1.295 19 C 0.130 3.870 20 C -0.092 4.092 21 H 0.096 0.904 22 C -0.129 4.129 23 C -0.071 4.071 24 C -0.084 4.084 25 C -0.122 4.122 26 C -0.047 4.047 27 Cl -0.074 7.074 28 C -0.118 4.118 29 C -0.105 4.105 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.414 0.586 34 H 0.004 0.996 35 H 0.003 0.997 36 H 0.244 0.756 37 H 0.056 0.944 38 H 0.019 0.981 39 H 0.045 0.955 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.127 0.873 43 H 0.141 0.859 44 H 0.149 0.851 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.936 0.280 14.344 22.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.086 4.086 3 H 0.143 0.857 4 C 0.299 3.701 5 O -0.458 6.458 6 N -0.351 5.351 7 C 0.033 3.967 8 H 0.088 0.912 9 C 0.056 3.944 10 N -0.353 5.353 11 C -0.371 4.371 12 H 0.105 0.895 13 C -0.263 4.263 14 N -0.599 5.599 15 Si 0.807 3.193 16 H -0.216 1.216 17 H -0.187 1.187 18 H -0.222 1.222 19 C 0.005 3.995 20 C -0.112 4.112 21 H 0.114 0.886 22 C -0.186 4.186 23 C -0.071 4.071 24 C -0.102 4.102 25 C -0.140 4.140 26 C -0.073 4.073 27 Cl -0.046 7.046 28 C -0.137 4.137 29 C -0.123 4.123 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.251 0.749 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.037 0.963 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.145 0.855 43 H 0.159 0.841 44 H 0.167 0.833 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -16.213 -0.419 14.542 21.783 hybrid contribution 1.501 0.363 -0.385 1.591 sum -14.712 -0.056 14.157 20.417 Atomic orbital electron populations 1.21816 0.89178 1.03431 1.04738 1.20371 0.99819 1.00409 0.88002 0.85705 1.21127 0.79287 0.84260 0.85435 1.90727 1.39140 1.28750 1.87193 1.45725 1.52871 1.32026 1.04475 1.21985 0.93941 0.95985 0.84788 0.91165 1.21174 0.93285 0.96347 0.83595 1.44758 1.16284 1.72123 1.02124 1.19501 0.92096 1.34281 0.91199 0.89500 1.25743 0.99823 1.03047 0.97666 1.70253 1.23681 1.52662 1.13348 0.85055 0.78757 0.77718 0.77762 1.21638 1.18719 1.22174 1.21866 0.85151 0.96048 0.96456 1.22524 0.94689 1.01479 0.92480 0.88603 1.21648 0.96624 0.97127 1.03209 1.19658 0.97732 0.94561 0.95188 1.20980 0.99220 0.94139 0.95852 1.21176 0.98048 1.00908 0.93897 1.21071 1.01227 0.94137 0.90890 1.98355 1.87869 1.79207 1.39121 1.21228 1.00727 0.92801 0.98911 1.21293 0.96434 1.01328 0.93293 0.92197 0.89412 0.89670 0.74892 0.97759 0.97846 0.94711 0.92597 0.96289 0.93538 0.90825 0.90533 0.85465 0.84080 0.83329 0.83038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 8.90 71.98 0.64 -1.12 16 2 C -0.06 -1.33 2.90 -12.28 -0.04 -1.37 16 3 H 0.13 2.11 7.88 -2.39 -0.02 2.09 16 4 C 0.51 15.68 7.03 87.66 0.62 16.30 16 5 O -0.58 -23.89 14.77 -3.04 -0.04 -23.94 16 6 N -0.70 -20.20 5.00 -436.89 -2.18 -22.38 16 7 C 0.14 5.17 2.78 46.18 0.13 5.30 16 8 H 0.07 2.91 7.42 -2.39 -0.02 2.89 16 9 C 0.18 9.35 5.19 86.73 0.45 9.80 16 10 N -0.63 -32.51 3.39 -691.96 -2.35 -34.86 16 11 C -0.24 -13.70 10.26 84.03 0.86 -12.84 16 12 H 0.09 4.63 7.84 -2.91 -0.02 4.61 16 13 C -0.07 -4.08 5.45 84.86 0.46 -3.62 16 14 N -0.95 -59.77 10.48 21.65 0.23 -59.54 16 15 Si 0.98 46.56 29.56 68.60 2.03 48.58 16 16 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 17 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 19 C 0.13 5.09 6.70 86.86 0.58 5.68 16 20 C -0.09 -2.75 3.27 -9.40 -0.03 -2.78 16 21 H 0.10 2.55 8.01 -2.39 -0.02 2.53 16 22 C -0.13 -2.83 9.29 71.98 0.67 -2.16 16 23 C -0.07 -1.65 4.39 -19.86 -0.09 -1.74 16 24 C -0.08 -2.04 7.94 22.27 0.18 -1.86 16 25 C -0.12 -2.84 9.83 22.29 0.22 -2.62 16 26 C -0.05 -1.07 6.32 22.32 0.14 -0.93 16 27 Cl -0.07 -1.55 28.96 -2.72 -0.08 -1.63 16 28 C -0.12 -2.51 9.83 22.29 0.22 -2.29 16 29 C -0.11 -2.24 9.67 22.26 0.22 -2.03 16 30 H 0.06 0.85 7.37 -2.39 -0.02 0.83 16 31 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.08 0.81 7.56 -2.39 -0.02 0.80 16 33 H 0.41 8.76 7.98 -92.71 -0.74 8.02 16 34 H 0.00 0.26 6.99 -2.39 -0.02 0.25 16 35 H 0.00 0.19 7.80 -2.39 -0.02 0.17 16 36 H 0.24 15.00 8.31 -92.71 -0.77 14.23 16 37 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.02 0.77 8.04 -2.39 -0.02 0.75 16 39 H 0.05 1.12 8.11 -2.39 -0.02 1.11 16 40 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.13 3.03 7.51 -2.91 -0.02 3.01 16 43 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 44 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 45 H 0.15 2.49 7.95 -2.91 -0.02 2.47 16 Total: -1.00 -77.77 380.68 3.08 -74.69 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.25 Total: 17.36 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 5.23 Total: 1.72 kcal Atomic # 7 Polarization: -112.48 SS G_CDS: -4.31 Total: -116.79 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.04 Total: -23.94 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.08 Total: -1.63 kcal Total: -77.77 3.08 -74.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080378708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.277 kcal (2) G-P(sol) polarization free energy of solvation -77.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds