Wall clock time and date at job start Sat Apr 11 2020 04:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.52743 * 2 1 4 4 C 1.53169 * 109.47873 * 120.07986 * 2 1 3 5 5 N 1.46926 * 108.76678 * 174.59096 * 4 2 1 6 6 C 1.34775 * 120.62536 * 126.40944 * 5 4 2 7 7 O 1.21278 * 120.00141 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99990 * 179.97438 * 6 5 4 9 9 S 1.80992 * 109.47524 * 180.02562 * 8 6 5 10 10 C 1.76199 * 100.00277 * 180.02562 * 9 8 6 11 11 H 1.08003 * 120.00090 * 359.97438 * 10 9 8 12 12 C 1.38799 * 119.99849 * 180.02562 * 10 9 8 13 13 N 1.31624 * 120.00454 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99717 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46943 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46967 * 119.99930 * 14 12 10 17 17 H 1.48498 * 109.47321 * 240.00108 * 14 12 10 18 18 C 1.46920 * 118.74193 * 306.39064 * 5 4 2 19 19 C 1.53191 * 108.77802 * 53.60744 * 18 5 4 20 20 C 1.53044 * 109.49602 * 239.91975 * 2 1 3 21 21 H 1.08997 * 109.45903 * 58.68251 * 20 2 1 22 22 N 1.46495 * 109.46268 * 298.70310 * 20 2 1 23 23 C 1.38406 * 120.00148 * 154.96952 * 22 20 2 24 24 N 1.32486 * 119.22048 * 180.02562 * 23 22 20 25 25 C 1.32283 * 120.74232 * 179.97438 * 24 23 22 26 26 C 1.38600 * 119.19467 * 0.28666 * 25 24 23 27 27 C 1.38610 * 118.55985 * 359.45031 * 26 25 24 28 28 N 1.32271 * 119.19534 * 0.54669 * 27 26 25 29 29 H 1.09003 * 109.47063 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47318 * 300.07830 * 1 2 3 31 31 H 1.09002 * 109.46807 * 60.07947 * 1 2 3 32 32 H 1.09002 * 109.59086 * 54.80759 * 4 2 1 33 33 H 1.09000 * 109.70333 * 294.44631 * 4 2 1 34 34 H 1.09007 * 109.46999 * 300.00577 * 8 6 5 35 35 H 1.08997 * 109.46994 * 59.99819 * 8 6 5 36 36 H 0.96999 * 119.99915 * 180.02562 * 13 12 10 37 37 H 1.09004 * 109.58646 * 293.82310 * 18 5 4 38 38 H 1.08998 * 109.58761 * 173.39475 * 18 5 4 39 39 H 1.08992 * 109.50053 * 185.41406 * 19 18 5 40 40 H 1.09004 * 109.52285 * 65.33108 * 19 18 5 41 41 H 0.96994 * 120.00299 * 334.97748 * 22 20 2 42 42 H 1.08002 * 120.39924 * 180.02562 * 25 24 23 43 43 H 1.08007 * 120.71993 * 179.70317 * 26 25 24 44 44 H 1.07997 * 120.40283 * 180.27130 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0408 -0.7238 1.2496 5 7 3.5041 -0.8291 1.1698 6 6 4.2803 -0.3863 2.1787 7 8 3.7721 0.1051 3.1641 8 6 5.7798 -0.5019 2.0823 9 16 6.5347 0.1740 3.5820 10 6 8.2378 -0.0813 3.2091 11 1 8.5230 -0.5385 2.2732 12 6 9.2127 0.3042 4.1187 13 7 8.8652 0.8610 5.2597 14 14 11.0183 0.0329 3.7237 15 1 11.1423 -0.6049 2.3883 16 1 11.7249 1.3390 3.7155 17 1 11.6229 -0.8506 4.7528 18 6 4.1050 -1.4267 -0.0303 19 6 3.5709 -0.6950 -1.2657 20 6 2.0408 -0.7231 -1.2484 21 1 1.6584 -0.2243 -2.1389 22 7 1.5784 -2.1130 -1.2309 23 6 1.4462 -2.8134 -2.4173 24 7 1.0262 -4.0695 -2.3836 25 6 0.8885 -4.7667 -3.4993 26 6 1.1952 -4.1695 -4.7119 27 6 1.6265 -2.8522 -4.7115 28 7 1.7423 -2.2116 -3.5601 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5150 0.8892 31 1 -0.3633 0.5126 -0.8907 32 1 1.6047 -1.7216 1.2979 33 1 1.7629 -0.1600 2.1401 34 1 6.0574 -1.5508 1.9772 35 1 6.1321 0.0558 1.2147 36 1 9.5466 1.1307 5.8951 37 1 3.8372 -2.4818 -0.0864 38 1 5.1893 -1.3246 0.0144 39 1 3.9336 -1.1897 -2.1667 40 1 3.9159 0.3389 -1.2543 41 1 1.3647 -2.5425 -0.3879 42 1 0.5454 -5.7902 -3.4654 43 1 1.0964 -4.7174 -5.6374 44 1 1.8693 -2.3563 -5.6396 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105027770.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:37:05 Heat of formation + Delta-G solvation = 23.659465 kcal Electronic energy + Delta-G solvation = -26464.271260 eV Core-core repulsion = 22736.170438 eV Total energy + Delta-G solvation = -3728.100823 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.136 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.26982 -40.18578 -38.11337 -35.09490 -33.88919 -33.64815 -32.43273 -31.78248 -29.97824 -29.55712 -26.60818 -25.61813 -25.21275 -24.54367 -23.65032 -22.34902 -20.33310 -19.08394 -18.60861 -17.69645 -17.30510 -16.71910 -16.10370 -15.74757 -15.67983 -15.49448 -14.95764 -14.80803 -14.77341 -14.36678 -13.99038 -13.91872 -13.73096 -13.65564 -13.15026 -12.97941 -12.65493 -12.29598 -12.09167 -11.97299 -11.65602 -11.49901 -11.23749 -11.18033 -11.08769 -11.07290 -11.01567 -10.76557 -10.68845 -10.52736 -9.79476 -9.36831 -9.36035 -9.07700 -8.55454 -8.33713 -8.22270 -6.50340 -6.21986 -3.92448 0.90536 0.94149 2.59466 2.91435 3.03952 3.21361 3.25864 3.30942 3.58890 3.66148 3.92634 4.19792 4.29977 4.36382 4.51545 4.55737 4.63682 4.87459 4.89534 4.93704 4.96145 5.04322 5.13298 5.18219 5.27125 5.33900 5.47531 5.49911 5.53289 5.62183 5.67834 5.71447 5.79817 5.86254 5.89524 5.94408 5.98122 6.07914 6.11900 6.56453 6.61306 6.82499 7.19294 7.53586 7.59793 8.07494 8.35173 8.54681 9.23509 10.85489 Molecular weight = 336.14amu Principal moments of inertia in cm(-1) A = 0.017381 B = 0.002497 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.529785 B =11209.485853 C =12294.660076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 H 0.094 0.906 4 C 0.117 3.883 5 N -0.620 5.620 6 C 0.536 3.464 7 O -0.516 6.516 8 C -0.150 4.150 9 S -0.061 6.061 10 C -0.534 4.534 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.918 3.082 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.110 3.890 19 C -0.146 4.146 20 C 0.169 3.831 21 H 0.095 0.905 22 N -0.687 5.687 23 C 0.567 3.433 24 N -0.574 5.574 25 C 0.193 3.807 26 C -0.299 4.299 27 C 0.192 3.808 28 N -0.567 5.567 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.412 0.588 42 H 0.164 0.836 43 H 0.141 0.859 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.968 -8.205 -21.597 29.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.135 4.135 3 H 0.112 0.888 4 C -0.007 4.007 5 N -0.356 5.356 6 C 0.324 3.676 7 O -0.391 6.391 8 C -0.301 4.301 9 S 0.165 5.835 10 C -0.682 4.682 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.013 4.013 19 C -0.185 4.185 20 C 0.063 3.937 21 H 0.113 0.887 22 N -0.324 5.324 23 C 0.210 3.790 24 N -0.296 5.296 25 C 0.025 3.975 26 C -0.325 4.325 27 C 0.024 3.976 28 N -0.290 5.290 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.251 0.749 42 H 0.181 0.819 43 H 0.159 0.841 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -18.488 -6.673 -19.050 27.372 hybrid contribution 1.644 -1.547 -2.054 3.052 sum -16.844 -8.220 -21.104 28.225 Atomic orbital electron populations 1.21744 0.93851 1.02187 1.02311 1.21836 0.96552 1.00822 0.94262 0.88795 1.21526 0.80210 1.00099 0.98818 1.48102 1.05959 1.62773 1.18745 1.20331 0.88846 0.76549 0.81842 1.90689 1.75003 1.42977 1.30396 1.23551 0.93704 1.05269 1.07555 1.85395 1.02289 1.79009 1.16774 1.22893 0.91183 1.47075 1.07057 0.90926 1.24993 0.99586 0.94564 0.94466 1.70025 1.34034 1.38466 1.07743 0.86120 0.82832 0.78089 0.78472 1.19618 1.20559 1.20564 1.21661 0.99120 0.96745 0.83818 1.22339 0.95576 1.02245 0.98369 1.20951 0.93577 0.80233 0.98896 0.88720 1.44373 1.70748 1.12836 1.04486 1.19361 0.87355 0.85481 0.86778 1.67920 1.21766 1.07298 1.32644 1.22898 0.88899 0.98847 0.86884 1.22507 1.10819 0.98571 1.00621 1.22932 0.88209 0.91043 0.95436 1.67957 1.23718 1.39232 0.98051 0.92495 0.91902 0.92270 0.92267 0.88316 0.89355 0.89264 0.92239 0.91741 0.89168 0.90188 0.90131 0.74910 0.81854 0.84116 0.81831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.05 37.16 0.34 -0.78 16 2 C -0.11 -1.05 2.67 -90.51 -0.24 -1.29 16 3 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 4 C 0.12 1.35 5.42 -3.72 -0.02 1.33 16 5 N -0.62 -8.64 2.97 -172.79 -0.51 -9.15 16 6 C 0.54 10.16 7.72 -10.98 -0.08 10.08 16 7 O -0.52 -11.71 15.27 5.56 0.08 -11.63 16 8 C -0.15 -3.07 4.50 36.01 0.16 -2.91 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 10 C -0.53 -15.24 9.50 30.94 0.29 -14.95 16 11 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 12 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 14 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 C 0.11 1.27 6.08 -3.71 -0.02 1.24 16 19 C -0.15 -1.43 5.78 -26.61 -0.15 -1.58 16 20 C 0.17 1.52 2.21 -67.89 -0.15 1.37 16 21 H 0.09 0.88 7.50 -51.93 -0.39 0.49 16 22 N -0.69 -6.39 3.74 -55.75 -0.21 -6.60 16 23 C 0.57 5.87 8.40 -322.80 -2.71 3.16 16 24 N -0.57 -5.88 10.46 -13.93 -0.15 -6.02 16 25 C 0.19 1.44 11.30 -17.22 -0.19 1.24 16 26 C -0.30 -1.84 10.16 -39.31 -0.40 -2.24 16 27 C 0.19 1.38 11.30 -17.23 -0.19 1.19 16 28 N -0.57 -5.52 9.20 -13.93 -0.13 -5.65 16 29 H 0.06 0.44 7.53 -51.93 -0.39 0.05 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.60 6.64 -51.93 -0.34 0.26 16 33 H 0.10 1.33 7.00 -51.93 -0.36 0.97 16 34 H 0.09 1.70 7.94 -51.91 -0.41 1.28 16 35 H 0.09 1.69 7.69 -51.92 -0.40 1.29 16 36 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.06 0.72 7.74 -51.93 -0.40 0.32 16 38 H 0.09 1.09 5.93 -51.93 -0.31 0.78 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.41 3.81 6.84 -40.82 -0.28 3.54 16 42 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.14 0.48 8.06 -52.48 -0.42 0.05 16 44 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 371.73 15.07 5.60 5.60 Total: -1.00 -35.20 371.73 -11.51 -46.70 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.22 Total: 1.82 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -3.48 Total: -2.14 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: -0.26 Total: -52.91 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.08 Total: -11.63 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.20 -11.51 -46.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105027770.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.360 kcal (2) G-P(sol) polarization free energy of solvation -35.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds