Wall clock time and date at job start Sat Apr 11 2020 04:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47327 * 2 1 4 4 C 1.36942 * 119.99719 * 275.30925 * 3 2 1 5 5 H 1.07999 * 120.00096 * 37.58081 * 4 3 2 6 6 C 1.38813 * 119.99469 * 217.57763 * 4 3 2 7 7 N 1.31613 * 120.00447 * 21.42349 * 6 4 3 8 8 Si 1.86800 * 119.99650 * 201.42171 * 6 4 3 9 9 H 1.48506 * 109.47248 * 60.00202 * 8 6 4 10 10 H 1.48500 * 109.47145 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47410 * 300.00433 * 8 6 4 12 12 C 1.46495 * 120.00057 * 95.30823 * 3 2 1 13 13 C 1.53007 * 109.47104 * 269.99797 * 12 3 2 14 14 N 1.46495 * 109.47104 * 180.02562 * 13 12 3 15 15 C 1.34783 * 120.00066 * 180.27705 * 14 13 12 16 16 O 1.21699 * 119.99795 * 359.72676 * 15 14 13 17 17 C 1.46591 * 119.99790 * 179.72419 * 15 14 13 18 18 C 1.34119 * 124.78254 * 179.72027 * 17 15 14 19 19 C 1.40110 * 115.31337 * 179.83147 * 18 17 15 20 20 C 1.42976 * 140.47632 * 180.11946 * 19 18 17 21 21 C 1.50696 * 125.73186 * 0.31742 * 20 19 18 22 22 N 1.29887 * 108.53654 * 180.31927 * 20 19 18 23 23 N 1.39772 * 109.43083 * 0.02562 * 22 20 19 24 24 C 1.46504 * 125.95130 * 180.02562 * 23 22 20 25 25 C 1.36724 * 108.10365 * 359.97438 * 23 22 20 26 26 S 1.75572 * 124.78970 * 0.02679 * 17 15 14 27 27 H 1.09000 * 109.47367 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47156 * 300.00246 * 1 2 3 29 29 H 1.09007 * 109.46986 * 60.00197 * 1 2 3 30 30 H 1.09001 * 109.47156 * 239.99754 * 2 1 3 31 31 H 1.09003 * 109.47275 * 120.00194 * 2 1 3 32 32 H 0.96993 * 120.00251 * 179.97438 * 7 6 4 33 33 H 1.08999 * 109.47009 * 150.00205 * 12 3 2 34 34 H 1.09003 * 109.47459 * 29.99888 * 12 3 2 35 35 H 1.08999 * 109.46854 * 60.00313 * 13 12 3 36 36 H 1.08995 * 109.47034 * 300.00656 * 13 12 3 37 37 H 0.97005 * 120.00084 * 0.02562 * 14 13 12 38 38 H 1.08006 * 122.34235 * 0.02597 * 18 17 15 39 39 H 1.08991 * 109.47264 * 90.00139 * 21 20 19 40 40 H 1.08998 * 109.47339 * 210.00488 * 21 20 19 41 41 H 1.09007 * 109.47086 * 330.00169 * 21 20 19 42 42 H 1.09004 * 109.47157 * 269.97672 * 24 23 22 43 43 H 1.09007 * 109.46730 * 29.97074 * 24 23 22 44 44 H 1.08991 * 109.47248 * 149.96848 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1432 2.0633 -1.1809 5 1 1.4106 1.9278 -1.9628 6 6 3.2113 2.9288 -1.3728 7 7 4.3027 2.7980 -0.6490 8 14 3.0996 4.2793 -2.6586 9 1 1.9629 5.1784 -2.3347 10 1 4.3625 5.0605 -2.6670 11 1 2.8846 3.6723 -3.9967 12 6 2.3732 2.0326 1.2632 13 6 1.1426 2.7383 1.8365 14 7 1.4976 3.3903 3.0994 15 6 0.5637 4.0729 3.7912 16 8 -0.5732 4.1517 3.3642 17 6 0.9175 4.7202 5.0580 18 6 0.0688 5.4258 5.8199 19 6 0.6176 5.9560 6.9949 20 6 0.2436 6.7384 8.1316 21 6 -1.1291 7.2985 8.4013 22 7 1.2858 6.8855 8.8927 23 7 2.3774 6.2278 8.3186 24 6 3.7313 6.1619 8.8743 25 6 1.9613 5.6557 7.1486 26 16 2.5139 4.6874 5.7881 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 5.0492 3.4026 -0.7834 33 1 3.1617 2.7640 1.0859 34 1 2.7255 1.2833 1.9722 35 1 0.3541 2.0069 2.0138 36 1 0.7903 3.4876 1.1276 37 1 2.4038 3.3277 3.4396 38 1 -0.9663 5.5724 5.5482 39 1 -1.7101 6.5761 8.9744 40 1 -1.0386 8.2244 8.9693 41 1 -1.6316 7.5003 7.4553 42 1 4.3173 7.0033 8.5043 43 1 3.6800 6.2053 9.9623 44 1 4.2039 5.2281 8.5699 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663406944.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:40:53 Heat of formation + Delta-G solvation = 81.369212 kcal Electronic energy + Delta-G solvation = -25906.057517 eV Core-core repulsion = 22180.459177 eV Total energy + Delta-G solvation = -3725.598340 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.136 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.59598 -39.33791 -36.43129 -35.73971 -34.14302 -34.01014 -31.89462 -30.20945 -29.86880 -29.07499 -27.55163 -25.94861 -24.39281 -23.56793 -22.44820 -21.33322 -20.41413 -20.14445 -19.54086 -18.10607 -16.84147 -16.28748 -16.15269 -15.72350 -15.70112 -15.19384 -14.74631 -14.55904 -13.99359 -13.88063 -13.82555 -13.69072 -13.46586 -13.38994 -13.02767 -12.71636 -12.64694 -12.38804 -12.16973 -12.09406 -11.60888 -11.51183 -11.20522 -11.17888 -11.12422 -10.75404 -10.65544 -10.53730 -10.10614 -10.03402 -9.91991 -9.90316 -9.65979 -8.76159 -8.56805 -8.46191 -8.02957 -6.63849 -5.84821 -3.43493 0.62657 0.65948 1.41204 1.61930 2.16448 2.57737 3.34776 3.41502 3.42476 3.45066 3.46644 4.01227 4.41607 4.46091 4.47673 4.74144 4.80598 4.98799 4.99717 5.26529 5.27123 5.29558 5.45237 5.52650 5.54212 5.84117 5.91783 5.99047 6.11026 6.15238 6.17934 6.36550 6.38025 6.41088 6.49542 6.68060 6.79486 6.91184 6.99345 7.16217 7.21763 7.51321 7.79280 7.81720 8.44008 8.47882 9.13319 9.75287 10.33270 11.15456 Molecular weight = 336.14amu Principal moments of inertia in cm(-1) A = 0.015618 B = 0.002630 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.375823 B =10644.681262 C =11117.602887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.579 5.579 4 C -0.262 4.262 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.280 1.280 12 C 0.137 3.863 13 C 0.097 3.903 14 N -0.714 5.714 15 C 0.586 3.414 16 O -0.535 6.535 17 C -0.256 4.256 18 C 0.013 3.987 19 C -0.224 4.224 20 C 0.131 3.869 21 C -0.077 4.077 22 N -0.267 5.267 23 N -0.356 5.356 24 C 0.104 3.896 25 C 0.023 3.977 26 S 0.197 5.803 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.034 0.966 32 H 0.256 0.744 33 H 0.099 0.901 34 H 0.029 0.971 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.393 0.607 38 H 0.155 0.845 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.586 5.685 20.285 21.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.391 4.391 5 H 0.079 0.921 6 C -0.186 4.186 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.216 1.216 11 H -0.206 1.206 12 C 0.009 3.991 13 C -0.027 4.027 14 N -0.364 5.364 15 C 0.371 3.629 16 O -0.414 6.414 17 C -0.376 4.376 18 C -0.020 4.020 19 C -0.240 4.240 20 C -0.043 4.043 21 C -0.136 4.136 22 N -0.086 5.086 23 N -0.142 5.142 24 C -0.037 4.037 25 C -0.216 4.216 26 S 0.450 5.550 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.116 0.884 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.227 0.773 38 H 0.173 0.827 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.113 0.887 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.227 5.653 20.666 21.460 hybrid contribution -0.984 1.033 -0.723 1.599 sum -2.211 6.686 19.943 21.150 Atomic orbital electron populations 1.22393 0.99884 0.99105 1.01429 1.20884 0.91782 0.86931 0.98914 1.43598 1.76054 1.08291 1.02024 1.18981 1.04800 1.21382 0.93968 0.92078 1.25182 0.94143 1.01182 0.98133 1.69976 1.03132 1.37339 1.42506 0.86468 0.77010 0.82325 0.81613 1.20725 1.21572 1.20614 1.21064 0.94511 0.96994 0.86507 1.22549 1.01318 0.96639 0.82230 1.46029 1.12397 1.53238 1.24718 1.16889 0.85397 0.78540 0.82097 1.90818 1.19954 1.61490 1.69096 1.23620 0.97322 1.13378 1.03239 1.19468 1.00797 0.91945 0.89785 1.18914 0.92720 1.11800 1.00540 1.22378 0.95816 0.95574 0.90510 1.20304 0.88482 1.01199 1.03567 1.76706 0.93115 1.17564 1.21166 1.47813 1.09360 1.42330 1.14707 1.21959 0.77150 1.03567 1.01043 1.24691 0.98315 1.03455 0.95110 1.84040 1.09265 1.51574 1.10134 0.94441 0.93645 0.93079 0.93547 0.94724 0.93445 0.88354 0.95245 0.92622 0.91382 0.77322 0.82715 0.89757 0.90293 0.89679 0.90369 0.88699 0.89363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 10.21 37.16 0.38 -2.72 16 2 C 0.14 2.93 6.44 -4.04 -0.03 2.90 16 3 N -0.58 -13.95 2.43 -173.24 -0.42 -14.38 16 4 C -0.26 -6.97 9.45 -15.06 -0.14 -7.11 16 5 H 0.06 1.64 7.92 -52.49 -0.42 1.22 16 6 C 0.01 0.38 4.95 -17.43 -0.09 0.29 16 7 N -0.89 -24.52 11.47 55.49 0.64 -23.88 16 8 Si 0.90 21.30 29.60 -169.99 -5.03 16.27 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.14 3.02 5.45 -4.04 -0.02 3.00 16 13 C 0.10 1.98 6.00 -4.04 -0.02 1.96 16 14 N -0.71 -12.38 5.55 -61.65 -0.34 -12.72 16 15 C 0.59 10.30 7.78 -12.89 -0.10 10.20 16 16 O -0.53 -11.12 16.74 5.19 0.09 -11.03 16 17 C -0.26 -3.68 6.33 -37.67 -0.24 -3.92 16 18 C 0.01 0.17 9.84 -40.33 -0.40 -0.22 16 19 C -0.22 -2.83 6.55 -107.25 -0.70 -3.53 16 20 C 0.13 1.48 7.28 -81.58 -0.59 0.89 16 21 C -0.08 -0.57 10.46 36.00 0.38 -0.19 16 22 N -0.27 -3.21 12.44 34.16 0.42 -2.78 16 23 N -0.36 -3.94 4.05 -66.02 -0.27 -4.21 16 24 C 0.10 0.68 11.48 59.85 0.69 1.37 16 25 C 0.02 0.28 8.01 -15.26 -0.12 0.16 16 26 S 0.20 2.29 22.27 -107.50 -2.39 -0.11 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.84 6.64 -51.93 -0.34 0.50 16 29 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 30 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 31 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 32 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 33 H 0.10 2.43 5.52 -51.93 -0.29 2.15 16 34 H 0.03 0.60 7.86 -51.93 -0.41 0.19 16 35 H 0.06 1.14 6.64 -51.93 -0.34 0.80 16 36 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.39 5.95 7.52 -40.82 -0.31 5.64 16 38 H 0.16 1.92 7.97 -52.48 -0.42 1.50 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 42 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 383.67 15.07 5.78 5.78 Total: -1.00 -32.60 383.67 -8.83 -41.43 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.29 Total: 2.57 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -1.01 Total: 3.06 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.03 Total: -57.97 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.39 Total: -0.11 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.60 -8.83 -41.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663406944.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.803 kcal (2) G-P(sol) polarization free energy of solvation -32.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds