Wall clock time and date at job start Sat Apr 11 2020 04:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47327 * 2 1 4 4 C 1.36942 * 119.99719 * 275.30925 * 3 2 1 5 5 H 1.07999 * 120.00096 * 37.58081 * 4 3 2 6 6 C 1.38813 * 119.99469 * 217.57763 * 4 3 2 7 7 N 1.31613 * 120.00447 * 21.42349 * 6 4 3 8 8 Si 1.86800 * 119.99650 * 201.42171 * 6 4 3 9 9 H 1.48506 * 109.47248 * 60.00202 * 8 6 4 10 10 H 1.48500 * 109.47145 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47410 * 300.00433 * 8 6 4 12 12 C 1.46495 * 120.00057 * 95.30823 * 3 2 1 13 13 C 1.53007 * 109.47104 * 269.99797 * 12 3 2 14 14 N 1.46495 * 109.47104 * 180.02562 * 13 12 3 15 15 C 1.34783 * 120.00066 * 180.27705 * 14 13 12 16 16 O 1.21699 * 119.99795 * 359.72676 * 15 14 13 17 17 C 1.46591 * 119.99790 * 179.72419 * 15 14 13 18 18 C 1.34119 * 124.78254 * 179.72027 * 17 15 14 19 19 C 1.40110 * 115.31337 * 179.83147 * 18 17 15 20 20 C 1.42976 * 140.47632 * 180.11946 * 19 18 17 21 21 C 1.50696 * 125.73186 * 0.31742 * 20 19 18 22 22 N 1.29887 * 108.53654 * 180.31927 * 20 19 18 23 23 N 1.39772 * 109.43083 * 0.02562 * 22 20 19 24 24 C 1.46504 * 125.95130 * 180.02562 * 23 22 20 25 25 C 1.36724 * 108.10365 * 359.97438 * 23 22 20 26 26 S 1.75572 * 124.78970 * 0.02679 * 17 15 14 27 27 H 1.09000 * 109.47367 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47156 * 300.00246 * 1 2 3 29 29 H 1.09007 * 109.46986 * 60.00197 * 1 2 3 30 30 H 1.09001 * 109.47156 * 239.99754 * 2 1 3 31 31 H 1.09003 * 109.47275 * 120.00194 * 2 1 3 32 32 H 0.96993 * 120.00251 * 179.97438 * 7 6 4 33 33 H 1.08999 * 109.47009 * 150.00205 * 12 3 2 34 34 H 1.09003 * 109.47459 * 29.99888 * 12 3 2 35 35 H 1.08999 * 109.46854 * 60.00313 * 13 12 3 36 36 H 1.08995 * 109.47034 * 300.00656 * 13 12 3 37 37 H 0.97005 * 120.00084 * 0.02562 * 14 13 12 38 38 H 1.08006 * 122.34235 * 0.02597 * 18 17 15 39 39 H 1.08991 * 109.47264 * 90.00139 * 21 20 19 40 40 H 1.08998 * 109.47339 * 210.00488 * 21 20 19 41 41 H 1.09007 * 109.47086 * 330.00169 * 21 20 19 42 42 H 1.09004 * 109.47157 * 269.97672 * 24 23 22 43 43 H 1.09007 * 109.46730 * 29.97074 * 24 23 22 44 44 H 1.08991 * 109.47248 * 149.96848 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1432 2.0633 -1.1809 5 1 1.4106 1.9278 -1.9628 6 6 3.2113 2.9288 -1.3728 7 7 4.3027 2.7980 -0.6490 8 14 3.0996 4.2793 -2.6586 9 1 1.9629 5.1784 -2.3347 10 1 4.3625 5.0605 -2.6670 11 1 2.8846 3.6723 -3.9967 12 6 2.3732 2.0326 1.2632 13 6 1.1426 2.7383 1.8365 14 7 1.4976 3.3903 3.0994 15 6 0.5637 4.0729 3.7912 16 8 -0.5732 4.1517 3.3642 17 6 0.9175 4.7202 5.0580 18 6 0.0688 5.4258 5.8199 19 6 0.6176 5.9560 6.9949 20 6 0.2436 6.7384 8.1316 21 6 -1.1291 7.2985 8.4013 22 7 1.2858 6.8855 8.8927 23 7 2.3774 6.2278 8.3186 24 6 3.7313 6.1619 8.8743 25 6 1.9613 5.6557 7.1486 26 16 2.5139 4.6874 5.7881 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 5.0492 3.4026 -0.7834 33 1 3.1617 2.7640 1.0859 34 1 2.7255 1.2833 1.9722 35 1 0.3541 2.0069 2.0138 36 1 0.7903 3.4876 1.1276 37 1 2.4038 3.3277 3.4396 38 1 -0.9663 5.5724 5.5482 39 1 -1.7101 6.5761 8.9744 40 1 -1.0386 8.2244 8.9693 41 1 -1.6316 7.5003 7.4553 42 1 4.3173 7.0033 8.5043 43 1 3.6800 6.2053 9.9623 44 1 4.2039 5.2281 8.5699 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663406944.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:40:50 Heat of formation + Delta-G solvation = 61.107064 kcal Electronic energy + Delta-G solvation = -25906.936149 eV Core-core repulsion = 22180.459177 eV Total energy + Delta-G solvation = -3726.476973 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.136 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.47249 -40.76081 -38.14746 -36.80814 -35.69281 -34.79246 -33.82265 -31.63148 -30.65698 -30.27229 -29.13293 -26.89925 -26.07542 -24.66941 -23.69482 -22.73646 -22.14699 -21.15839 -20.79547 -19.09178 -18.52166 -17.62577 -17.16028 -17.00809 -16.89370 -16.59406 -16.39655 -15.69557 -15.64984 -15.39941 -15.02013 -14.56491 -14.43767 -14.37348 -14.09489 -14.05264 -13.82936 -13.57989 -13.26474 -13.22578 -13.07125 -13.00339 -12.60952 -12.49309 -12.41465 -12.30624 -12.14125 -12.07459 -12.01255 -11.69706 -11.51268 -11.19990 -10.88340 -10.53898 -10.17309 -9.60174 -8.93202 -8.59159 -7.85366 -5.47933 -0.42262 -0.27369 0.51558 0.61498 1.43752 1.45365 1.49114 1.54978 1.55729 2.04088 2.17351 2.51065 3.22304 3.26561 3.44084 3.70281 3.75582 3.86724 4.23204 4.29986 4.31330 4.35340 4.39824 4.48513 4.56434 4.71598 4.77340 4.79522 4.82244 4.85263 4.86218 4.95484 5.00228 5.10144 5.19493 5.30674 5.32003 5.38430 5.58303 5.60507 5.66022 5.74196 6.36863 6.40545 6.48247 7.05480 7.16350 7.83211 8.35579 9.10731 Molecular weight = 336.14amu Principal moments of inertia in cm(-1) A = 0.015618 B = 0.002630 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.375823 B =10644.681262 C =11117.602887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.136 3.864 3 N -0.597 5.597 4 C -0.271 4.271 5 H 0.053 0.947 6 C -0.028 4.028 7 N -0.910 5.910 8 Si 0.950 3.050 9 H -0.286 1.286 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.144 3.856 13 C 0.119 3.881 14 N -0.709 5.709 15 C 0.589 3.411 16 O -0.574 6.574 17 C -0.289 4.289 18 C 0.028 3.972 19 C -0.246 4.246 20 C 0.131 3.869 21 C -0.078 4.078 22 N -0.285 5.285 23 N -0.355 5.355 24 C 0.091 3.909 25 C 0.018 3.982 26 S 0.239 5.761 27 H 0.069 0.931 28 H 0.041 0.959 29 H 0.034 0.966 30 H 0.037 0.963 31 H 0.052 0.948 32 H 0.254 0.746 33 H 0.074 0.926 34 H 0.046 0.954 35 H 0.055 0.945 36 H 0.035 0.965 37 H 0.405 0.595 38 H 0.158 0.842 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.109 0.891 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.424 5.926 21.946 22.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.011 3.989 3 N -0.318 5.318 4 C -0.402 4.402 5 H 0.070 0.930 6 C -0.226 4.226 7 N -0.553 5.553 8 Si 0.778 3.222 9 H -0.212 1.212 10 H -0.214 1.214 11 H -0.200 1.200 12 C 0.017 3.983 13 C -0.006 4.006 14 N -0.360 5.360 15 C 0.376 3.624 16 O -0.456 6.456 17 C -0.408 4.408 18 C -0.006 4.006 19 C -0.262 4.262 20 C -0.043 4.043 21 C -0.136 4.136 22 N -0.103 5.103 23 N -0.141 5.141 24 C -0.048 4.048 25 C -0.222 4.222 26 S 0.492 5.508 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.241 0.759 38 H 0.176 0.824 39 H 0.117 0.883 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.128 0.872 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.039 5.885 22.360 23.145 hybrid contribution -1.017 0.958 -1.113 1.786 sum -2.055 6.843 21.247 22.417 Atomic orbital electron populations 1.22224 0.97951 1.00882 1.00445 1.21021 0.93192 0.85352 0.99327 1.43836 1.76392 1.09658 1.01900 1.19128 1.04416 1.21877 0.94737 0.92968 1.25750 0.94019 1.02787 1.00026 1.70065 1.03483 1.37932 1.43799 0.85628 0.76573 0.80019 0.79961 1.21244 1.21393 1.20028 1.20932 0.94275 0.96822 0.86315 1.22044 1.00310 0.95536 0.82755 1.45840 1.13160 1.53203 1.23786 1.17216 0.84640 0.77811 0.82743 1.90785 1.21473 1.62896 1.70407 1.23281 0.99716 1.15138 1.02710 1.19564 1.00851 0.90624 0.89569 1.19075 0.93205 1.12950 1.00969 1.22937 0.97045 0.94729 0.89597 1.20472 0.86687 1.01927 1.04503 1.76700 0.93625 1.18242 1.21715 1.48268 1.10443 1.41306 1.14126 1.22360 0.75365 1.05076 1.02040 1.24917 0.98541 1.03199 0.95589 1.83790 1.06646 1.51159 1.09253 0.91238 0.93987 0.94632 0.94414 0.92956 0.93655 0.90793 0.93564 0.92679 0.94656 0.75946 0.82444 0.88308 0.89101 0.88806 0.89031 0.87209 0.87706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.55 10.21 71.98 0.73 -4.81 16 2 C 0.14 5.55 6.44 86.38 0.56 6.10 16 3 N -0.60 -28.84 2.43 -701.99 -1.71 -30.55 16 4 C -0.27 -14.62 9.45 84.03 0.79 -13.82 16 5 H 0.05 2.85 7.92 -2.91 -0.02 2.83 16 6 C -0.03 -1.49 4.95 84.86 0.42 -1.07 16 7 N -0.91 -50.65 11.47 21.65 0.25 -50.40 16 8 Si 0.95 44.18 29.60 68.60 2.03 46.21 16 9 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 10 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 12 C 0.14 6.37 5.45 86.38 0.47 6.84 16 13 C 0.12 4.92 6.00 86.38 0.52 5.44 16 14 N -0.71 -24.68 5.55 -467.16 -2.59 -27.27 16 15 C 0.59 20.87 7.78 86.42 0.67 21.54 16 16 O -0.57 -24.38 16.74 -4.35 -0.07 -24.45 16 17 C -0.29 -8.20 6.33 23.51 0.15 -8.05 16 18 C 0.03 0.72 9.84 21.78 0.21 0.93 16 19 C -0.25 -5.94 6.55 -21.57 -0.14 -6.08 16 20 C 0.13 2.75 7.28 44.03 0.32 3.07 16 21 C -0.08 -0.99 10.46 71.23 0.74 -0.25 16 22 N -0.28 -6.33 12.44 -45.85 -0.57 -6.90 16 23 N -0.36 -7.18 4.05 -362.78 -1.47 -8.65 16 24 C 0.09 0.97 11.48 127.77 1.47 2.44 16 25 C 0.02 0.41 8.01 84.00 0.67 1.08 16 26 S 0.24 5.23 22.27 -56.49 -1.26 3.97 16 27 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.04 1.51 6.64 -2.39 -0.02 1.49 16 29 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.04 1.58 8.08 -2.39 -0.02 1.56 16 31 H 0.05 1.93 7.83 -2.39 -0.02 1.91 16 32 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 33 H 0.07 3.71 5.52 -2.39 -0.01 3.69 16 34 H 0.05 1.86 7.86 -2.39 -0.02 1.84 16 35 H 0.05 2.27 6.64 -2.39 -0.02 2.26 16 36 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.41 12.09 7.52 -92.70 -0.70 11.39 16 38 H 0.16 3.88 7.97 -2.91 -0.02 3.85 16 39 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 42 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 44 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -70.16 383.67 2.53 -67.64 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.33 Total: 17.05 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 7.59 Total: 13.35 kcal Atomic # 7 Polarization: -117.67 SS G_CDS: -6.09 Total: -123.77 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.07 Total: -24.45 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: 5.23 SS G_CDS: -1.26 Total: 3.97 kcal Total: -70.16 2.53 -67.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663406944.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.742 kcal (2) G-P(sol) polarization free energy of solvation -70.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds