Wall clock time and date at job start Sat Apr 11 2020 04:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46503 * 119.99980 * 2 1 4 4 C 1.52998 * 109.47332 * 270.00485 * 3 2 1 5 5 C 1.53001 * 109.46799 * 180.02562 * 4 3 2 6 6 N 1.46505 * 109.46946 * 180.02562 * 5 4 3 7 7 C 1.36935 * 120.00006 * 179.97438 * 6 5 4 8 8 H 1.08003 * 120.00143 * 0.02562 * 7 6 5 9 9 C 1.38811 * 119.99824 * 179.97438 * 7 6 5 10 10 N 1.31622 * 120.00007 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00205 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.47286 * 89.99530 * 11 9 7 13 13 H 1.48497 * 109.47114 * 209.99442 * 11 9 7 14 14 H 1.48501 * 109.46889 * 329.99392 * 11 9 7 15 15 C 1.34775 * 119.99977 * 180.02562 * 2 1 3 16 16 O 1.21274 * 119.99820 * 174.45636 * 15 2 1 17 17 C 1.50698 * 119.99872 * 354.45606 * 15 2 1 18 18 H 1.09006 * 110.26673 * 32.09734 * 17 15 2 19 19 C 1.54343 * 110.30101 * 154.17164 * 17 15 2 20 20 C 1.54341 * 102.39645 * 92.57495 * 19 17 15 21 21 C 1.51365 * 105.17249 * 26.35067 * 20 19 17 22 22 C 1.38476 * 109.78880 * 342.83115 * 21 20 19 23 23 C 1.38275 * 119.82054 * 180.08469 * 22 21 20 24 24 C 1.38150 * 120.31138 * 359.93416 * 23 22 21 25 25 C 1.38185 * 119.95289 * 0.03846 * 24 23 22 26 26 C 1.38269 * 119.91759 * 0.02562 * 25 24 23 27 27 Cl 1.73601 * 119.90449 * 180.02562 * 26 25 24 28 28 H 1.08999 * 109.47598 * 95.02702 * 1 2 3 29 29 H 1.08995 * 109.46866 * 215.03241 * 1 2 3 30 30 H 1.08999 * 109.46858 * 335.03265 * 1 2 3 31 31 H 1.08996 * 109.46881 * 149.99721 * 3 2 1 32 32 H 1.09003 * 109.46950 * 30.00681 * 3 2 1 33 33 H 1.09000 * 109.46765 * 299.99987 * 4 3 2 34 34 H 1.09001 * 109.47084 * 60.00343 * 4 3 2 35 35 H 1.09000 * 109.47358 * 299.99510 * 5 4 3 36 36 H 1.08992 * 109.47484 * 59.99793 * 5 4 3 37 37 H 0.96996 * 119.99786 * 359.97438 * 6 5 4 38 38 H 0.96996 * 120.00229 * 180.02562 * 10 9 7 39 39 H 1.09001 * 110.82073 * 210.80168 * 19 17 15 40 40 H 1.09003 * 110.82361 * 334.34398 * 19 17 15 41 41 H 1.09009 * 110.30166 * 145.27517 * 20 19 17 42 42 H 1.08999 * 110.30605 * 267.32567 * 20 19 17 43 43 H 1.08001 * 119.80671 * 179.97438 * 23 22 21 44 44 H 1.07999 * 120.02313 * 180.02562 * 24 23 22 45 45 H 1.08001 * 120.04160 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 6 3.2180 3.0352 -1.4423 6 7 3.4616 3.4586 -2.8236 7 6 4.1346 4.6246 -3.0737 8 1 4.4863 5.2320 -2.2528 9 6 4.3659 5.0254 -4.3824 10 7 5.0132 6.1459 -4.6229 11 14 3.7583 3.9746 -5.8023 12 1 2.3851 4.3965 -6.1782 13 1 4.6643 4.1442 -6.9666 14 1 3.7427 2.5478 -5.3909 15 6 2.1389 -1.1672 -0.0005 16 8 3.3474 -1.1696 -0.1020 17 6 1.3907 -2.4693 0.1250 18 1 0.4093 -2.3874 -0.3424 19 6 2.1977 -3.6151 -0.5214 20 6 3.0023 -4.1688 0.6737 21 6 2.1765 -3.8329 1.8969 22 6 1.2482 -2.8549 1.5818 23 6 0.3822 -2.3898 2.5543 24 6 0.4381 -2.8973 3.8380 25 6 1.3634 -3.8736 4.1543 26 6 2.2320 -4.3404 3.1851 27 17 3.3939 -5.5675 3.5826 28 1 -0.3634 -0.0900 -1.0237 29 1 -0.3633 -0.8415 0.5899 30 1 -0.3633 0.9316 0.4338 31 1 3.1499 1.1384 0.5139 32 1 1.6085 2.0284 0.5140 33 1 3.0415 0.9509 -1.9563 34 1 1.5000 1.8410 -1.9562 35 1 2.6293 3.7951 -0.9283 36 1 4.1704 2.9045 -0.9287 37 1 3.1461 2.9130 -3.5608 38 1 5.1745 6.4262 -5.5373 39 1 1.5321 -4.3772 -0.9267 40 1 2.8650 -3.2317 -1.2934 41 1 3.1207 -5.2486 0.5821 42 1 3.9777 -3.6855 0.7295 43 1 -0.3414 -1.6268 2.3083 44 1 -0.2408 -2.5310 4.5939 45 1 1.4080 -4.2716 5.1573 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733114607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:37:22 Heat of formation + Delta-G solvation = -4.594008 kcal Electronic energy + Delta-G solvation = -26227.837090 eV Core-core repulsion = 22464.174648 eV Total energy + Delta-G solvation = -3763.662443 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 336.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.26881 -39.39585 -36.95383 -36.49417 -35.59148 -35.02284 -32.46739 -31.62204 -30.31484 -29.54667 -28.21415 -27.14972 -25.38707 -23.18434 -22.89291 -21.67985 -21.44005 -21.01363 -19.15140 -17.72341 -17.52391 -17.10863 -16.07060 -16.00250 -15.81277 -15.37199 -15.13122 -14.46743 -14.41883 -14.08136 -13.83947 -13.67056 -13.61535 -13.37097 -13.05263 -12.86459 -12.69946 -12.28853 -12.17734 -12.07410 -12.04922 -11.87225 -11.54673 -11.47574 -11.44389 -11.19317 -11.13125 -10.91012 -10.82095 -10.49260 -10.15416 -10.06539 -9.57035 -9.06362 -8.95608 -8.86709 -8.78267 -7.20183 -5.74121 -3.09381 0.69227 0.78574 1.77936 2.43130 2.79433 3.18438 3.39469 3.42921 3.46967 3.86505 4.10373 4.27938 4.44029 4.50772 4.58455 4.61865 4.78650 4.84063 4.95194 5.00595 5.04975 5.14247 5.22814 5.25343 5.30768 5.41612 5.42027 5.54313 5.57756 5.59920 5.63202 5.77622 5.80335 5.87254 5.91685 5.93170 6.01272 6.03251 6.26415 6.31768 6.42069 6.76582 6.79273 7.20768 8.01754 8.03074 8.45133 9.24200 9.96790 10.17017 11.44387 Molecular weight = 336.13amu Principal moments of inertia in cm(-1) A = 0.021451 B = 0.002208 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.966368 B =12677.116137 C =13029.941867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.614 5.614 3 C 0.120 3.880 4 C -0.143 4.143 5 C 0.161 3.839 6 N -0.757 5.757 7 C -0.243 4.243 8 H 0.090 0.910 9 C 0.002 3.998 10 N -0.935 5.935 11 Si 0.886 3.114 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.277 1.277 15 C 0.524 3.476 16 O -0.523 6.523 17 C -0.071 4.071 18 H 0.105 0.895 19 C -0.102 4.102 20 C -0.081 4.081 21 C -0.070 4.070 22 C -0.078 4.078 23 C -0.097 4.097 24 C -0.110 4.110 25 C -0.106 4.106 26 C -0.025 4.025 27 Cl -0.071 7.071 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.027 0.973 36 H 0.028 0.972 37 H 0.360 0.640 38 H 0.259 0.741 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.129 0.871 44 H 0.136 0.864 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.728 -25.592 18.234 34.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.347 5.347 3 C -0.002 4.002 4 C -0.182 4.182 5 C 0.033 3.967 6 N -0.402 5.402 7 C -0.373 4.373 8 H 0.108 0.892 9 C -0.193 4.193 10 N -0.583 5.583 11 Si 0.716 3.284 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.203 1.203 15 C 0.310 3.690 16 O -0.398 6.398 17 C -0.092 4.092 18 H 0.123 0.877 19 C -0.140 4.140 20 C -0.118 4.118 21 C -0.071 4.071 22 C -0.079 4.079 23 C -0.115 4.115 24 C -0.128 4.128 25 C -0.124 4.124 26 C -0.052 4.052 27 Cl -0.042 7.042 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.099 0.901 42 H 0.114 0.886 43 H 0.146 0.854 44 H 0.154 0.846 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.838 -25.473 18.258 34.260 hybrid contribution -0.469 -0.615 -1.002 1.266 sum -14.306 -26.088 17.256 34.396 Atomic orbital electron populations 1.21932 0.79733 1.03269 1.02124 1.47876 1.06932 1.06284 1.73621 1.21511 0.97555 0.83357 0.97779 1.22104 1.00966 0.98972 0.96132 1.20517 0.96615 0.91942 0.87655 1.42705 1.69677 1.26223 1.01619 1.19079 1.27755 0.96830 0.93617 0.89194 1.24683 1.00494 0.97235 0.96922 1.69704 1.46144 1.23030 1.19445 0.86520 0.78395 0.80334 0.83163 1.21114 1.21687 1.20343 1.20244 0.87847 0.84642 0.76241 1.90728 1.13965 1.86816 1.48251 1.20843 1.01113 0.94199 0.93026 0.87720 1.22237 0.98360 0.95630 0.97786 1.21102 0.99083 1.01744 0.89833 1.20528 0.96816 0.96191 0.93548 1.20074 0.96555 0.96898 0.94389 1.20746 0.98613 0.99664 0.92439 1.20986 0.98736 0.96717 0.96372 1.21012 0.94998 0.97574 0.98862 1.20507 0.95349 0.95538 0.93768 1.98373 1.58400 1.53383 1.94023 0.92233 0.91365 0.90368 0.89782 0.90287 0.91547 0.92048 0.95555 0.95419 0.80718 0.93085 0.89994 0.88984 0.90094 0.88634 0.85358 0.84630 0.84645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 9.89 59.85 0.59 1.09 16 2 N -0.61 -6.74 2.87 -181.57 -0.52 -7.26 16 3 C 0.12 1.54 5.41 -4.04 -0.02 1.52 16 4 C -0.14 -2.27 5.65 -26.73 -0.15 -2.42 16 5 C 0.16 3.20 6.26 -4.04 -0.03 3.17 16 6 N -0.76 -18.85 5.41 -59.91 -0.32 -19.17 16 7 C -0.24 -7.13 10.47 -15.06 -0.16 -7.29 16 8 H 0.09 2.80 8.06 -52.48 -0.42 2.38 16 9 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 10 N -0.94 -30.02 13.97 55.49 0.78 -29.24 16 11 Si 0.89 22.70 27.74 -169.99 -4.71 17.99 16 12 H -0.28 -7.16 7.11 56.52 0.40 -6.75 16 13 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 14 H -0.28 -6.77 6.52 56.52 0.37 -6.40 16 15 C 0.52 6.50 6.75 -10.99 -0.07 6.42 16 16 O -0.52 -8.60 15.48 5.56 0.09 -8.52 16 17 C -0.07 -0.64 2.36 -91.89 -0.22 -0.85 16 18 H 0.10 0.70 6.66 -51.93 -0.35 0.35 16 19 C -0.10 -0.90 6.28 -25.33 -0.16 -1.05 16 20 C -0.08 -0.76 6.26 -26.85 -0.17 -0.93 16 21 C -0.07 -0.69 6.06 -104.09 -0.63 -1.32 16 22 C -0.08 -0.71 5.40 -104.19 -0.56 -1.27 16 23 C -0.10 -0.71 9.67 -39.60 -0.38 -1.09 16 24 C -0.11 -0.73 10.04 -39.63 -0.40 -1.13 16 25 C -0.11 -0.80 9.83 -39.59 -0.39 -1.19 16 26 C -0.03 -0.23 6.32 -39.45 -0.25 -0.48 16 27 Cl -0.07 -0.63 28.71 -51.86 -1.49 -2.12 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.34 4.46 -51.93 -0.23 0.11 16 30 H 0.08 0.45 7.84 -51.93 -0.41 0.05 16 31 H 0.08 1.21 7.51 -51.93 -0.39 0.82 16 32 H 0.08 0.84 7.86 -51.93 -0.41 0.43 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.36 8.76 5.53 -40.82 -0.23 8.54 16 38 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.93 7.49 -51.93 -0.39 0.54 16 41 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 42 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.13 0.66 6.39 -52.49 -0.34 0.33 16 44 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 45 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 378.43 15.07 5.70 5.70 Total: -1.00 -35.56 378.43 -10.13 -45.69 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.55 Total: 3.77 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -3.09 Total: -6.84 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.07 Total: -55.67 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.09 Total: -8.52 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.71 Total: 17.99 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.49 Total: -2.12 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.56 -10.13 -45.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733114607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.095 kcal (2) G-P(sol) polarization free energy of solvation -35.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds