Wall clock time and date at job start Sat Apr 11 2020 04:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47070 * 2 1 4 4 C 1.52997 * 109.47308 * 119.99958 * 2 1 3 5 5 H 1.09003 * 109.46953 * 298.16746 * 4 2 1 6 6 C 1.50700 * 109.47208 * 58.16532 * 4 2 1 7 7 O 1.21273 * 120.00031 * 111.30692 * 6 4 2 8 8 N 1.34773 * 119.99870 * 291.31726 * 6 4 2 9 9 C 1.46498 * 119.99872 * 176.35397 * 8 6 4 10 10 H 1.08997 * 109.47340 * 324.99477 * 9 8 6 11 11 C 1.50706 * 109.47173 * 204.99335 * 9 8 6 12 12 H 1.08001 * 120.00128 * 0.02562 * 11 9 8 13 13 C 1.37873 * 119.99926 * 179.97438 * 11 9 8 14 14 N 1.31514 * 120.00386 * 0.02562 * 13 11 9 15 15 Si 1.86807 * 120.00099 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47021 * 60.00009 * 15 13 11 17 17 H 1.48500 * 109.47445 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.46899 * 300.00444 * 15 13 11 19 19 C 1.53001 * 109.47448 * 84.99923 * 9 8 6 20 20 F 1.39900 * 109.47319 * 59.99811 * 19 9 8 21 21 F 1.39898 * 109.47613 * 180.02562 * 19 9 8 22 22 F 1.39905 * 109.46631 * 299.99940 * 19 9 8 23 23 N 1.46501 * 109.47229 * 178.16582 * 4 2 1 24 24 C 1.46756 * 124.34822 * 125.99029 * 23 4 2 25 25 C 1.54487 * 105.47272 * 162.98466 * 24 23 4 26 26 C 1.54629 * 101.76294 * 25.41459 * 25 24 23 27 27 C 1.34743 * 124.29630 * 305.95107 * 23 4 2 28 28 O 1.21279 * 125.12493 * 0.41283 * 27 23 4 29 29 H 1.09006 * 109.46866 * 305.77309 * 1 2 3 30 30 H 1.09003 * 109.47119 * 65.77217 * 1 2 3 31 31 H 1.08996 * 109.47148 * 185.77599 * 1 2 3 32 32 H 1.08999 * 109.46446 * 240.00610 * 2 1 3 33 33 H 1.08993 * 109.47284 * 185.25425 * 3 2 1 34 34 H 1.09010 * 109.46980 * 305.25085 * 3 2 1 35 35 H 1.09001 * 109.47610 * 65.24943 * 3 2 1 36 36 H 0.97001 * 120.00597 * 356.34928 * 8 6 4 37 37 H 0.97000 * 120.00373 * 179.97438 * 14 13 11 38 38 H 1.08992 * 110.25246 * 43.98628 * 24 23 4 39 39 H 1.09006 * 110.31997 * 282.01759 * 24 23 4 40 40 H 1.08996 * 110.96951 * 267.29780 * 25 24 23 41 41 H 1.08992 * 110.96808 * 143.53412 * 25 24 23 42 42 H 1.09002 * 110.48589 * 93.88414 * 26 25 24 43 43 H 1.08999 * 110.48562 * 216.39081 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.7038 -0.1887 2.1389 6 6 1.5010 -2.1283 1.2722 7 8 2.2510 -3.0677 1.1118 8 7 0.1853 -2.3427 1.4708 9 6 -0.3517 -3.7045 1.4137 10 1 0.1883 -4.2767 0.6594 11 6 -1.8142 -3.6531 1.0535 12 1 -2.2954 -2.7012 0.8837 13 6 -2.5376 -4.8212 0.9398 14 7 -1.9516 -5.9804 1.1461 15 14 -4.3503 -4.7576 0.4927 16 1 -4.5108 -4.1059 -0.8319 17 1 -4.8947 -6.1380 0.4350 18 1 -5.0865 -3.9781 1.5203 19 6 -0.1861 -4.3758 2.7786 20 9 -0.8792 -3.6413 3.7467 21 9 -0.6984 -5.6764 2.7239 22 9 1.1716 -4.4235 3.1129 23 7 3.5044 -0.7596 1.2273 24 6 4.3618 -0.2769 2.3162 25 6 5.7501 -0.9025 2.0558 26 6 5.7099 -1.1343 0.5276 27 6 4.2360 -1.2436 0.2045 28 8 3.7822 -1.6993 -0.8237 29 1 -0.3633 0.6008 0.8338 30 1 -0.3633 0.4217 -0.9372 31 1 -0.3633 -1.0224 0.1034 32 1 1.8933 -0.5138 -0.8901 33 1 3.1259 1.4440 -0.0941 34 1 1.6019 1.9828 -0.8393 35 1 1.7555 1.9286 0.9332 36 1 -0.4061 -1.5954 1.6516 37 1 -2.4607 -6.8022 1.0665 38 1 3.9727 -0.6095 3.2784 39 1 4.4278 0.8109 2.2921 40 1 5.8593 -1.8459 2.5907 41 1 6.5470 -0.2091 2.3244 42 1 6.1541 -0.2891 0.0017 43 1 6.2269 -2.0581 0.2681 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928811650.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:37:22 Heat of formation + Delta-G solvation = -199.718480 kcal Electronic energy + Delta-G solvation = -32165.184285 eV Core-core repulsion = 27410.494705 eV Total energy + Delta-G solvation = -4754.689580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.34300 -45.99874 -45.60421 -40.71721 -38.74969 -36.20765 -35.68229 -34.70501 -32.56422 -31.58079 -28.93222 -27.52952 -26.87868 -26.53610 -24.54548 -22.09043 -21.75293 -20.81743 -20.14816 -19.02328 -17.51971 -16.97855 -16.74853 -16.65313 -16.48575 -16.39335 -15.60335 -15.05529 -14.76911 -14.54763 -14.36766 -13.88944 -13.56924 -13.39080 -13.23222 -12.97233 -12.92371 -12.66825 -12.58904 -12.48910 -12.40134 -12.35170 -12.28842 -12.08155 -11.97319 -11.81559 -11.57094 -11.20201 -11.12980 -11.06494 -10.96271 -10.86525 -10.73882 -10.60548 -10.38697 -9.67509 -9.47540 -9.32116 -8.70207 -8.42666 -8.18770 -6.22392 -4.46892 2.76313 3.04228 3.18148 3.21351 3.25757 3.27201 3.87582 4.21449 4.38856 4.42675 4.56972 4.73292 4.85449 4.92885 4.94409 5.04612 5.12510 5.26211 5.36512 5.40442 5.45656 5.60975 5.64325 5.73800 5.76134 5.85745 5.86858 5.88202 5.91535 5.97136 6.14447 6.21849 6.36135 6.48146 6.63612 6.96258 7.17439 7.29160 7.47260 7.64009 8.28861 8.43712 8.50931 8.90009 9.21032 10.69172 Molecular weight = 336.14amu Principal moments of inertia in cm(-1) A = 0.016390 B = 0.004384 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.979199 B = 6385.894230 C = 7193.154023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.106 4.106 3 C -0.136 4.136 4 C 0.148 3.852 5 H 0.105 0.895 6 C 0.494 3.506 7 O -0.513 6.513 8 N -0.712 5.712 9 C 0.246 3.754 10 H 0.084 0.916 11 C -0.552 4.552 12 H 0.077 0.923 13 C 0.066 3.934 14 N -0.839 5.839 15 Si 0.915 3.085 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.417 3.583 20 F -0.210 7.210 21 F -0.137 7.137 22 F -0.218 7.218 23 N -0.606 5.606 24 C 0.105 3.895 25 C -0.130 4.130 26 C -0.154 4.154 27 C 0.526 3.474 28 O -0.512 6.512 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.400 0.600 37 H 0.269 0.731 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.884 14.619 2.698 17.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.126 4.126 3 C -0.193 4.193 4 C 0.041 3.959 5 H 0.123 0.877 6 C 0.277 3.723 7 O -0.387 6.387 8 N -0.365 5.365 9 C 0.140 3.860 10 H 0.101 0.899 11 C -0.589 4.589 12 H 0.095 0.905 13 C -0.143 4.143 14 N -0.472 5.472 15 Si 0.741 3.259 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.198 1.198 19 C 0.361 3.639 20 F -0.192 7.192 21 F -0.118 7.118 22 F -0.200 7.200 23 N -0.340 5.340 24 C -0.018 4.018 25 C -0.168 4.168 26 C -0.194 4.194 27 C 0.314 3.686 28 O -0.387 6.387 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.237 0.763 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.117 0.883 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 10.104 13.426 2.048 16.927 hybrid contribution -1.195 0.138 0.423 1.275 sum 8.908 13.564 2.471 16.415 Atomic orbital electron populations 1.22333 0.93812 1.04857 1.02260 1.21409 0.96753 0.96252 0.98191 1.21738 1.00778 0.95172 1.01609 1.20954 0.79775 0.94434 1.00714 0.87690 1.20770 0.82979 0.91108 0.77402 1.90717 1.56991 1.43749 1.47267 1.46441 1.07778 1.10676 1.71634 1.19718 0.97526 0.79612 0.89136 0.89870 1.20820 0.91735 0.94317 1.52023 0.90489 1.25079 0.99954 0.95062 0.94247 1.70391 1.36628 0.97923 1.42300 0.86282 0.82956 0.77494 0.79177 1.19738 1.20899 1.19830 1.23160 0.71467 0.79582 0.89739 1.92981 1.80242 1.78244 1.67758 1.93402 1.85526 1.37035 1.95864 1.93070 1.35959 1.96688 1.94246 1.47937 1.04365 1.62654 1.19069 1.22051 0.90357 0.98532 0.90847 1.22563 0.96425 1.02343 0.95447 1.22299 0.95113 1.04806 0.97223 1.20744 0.88877 0.76062 0.82936 1.90708 1.77222 1.43845 1.26877 0.92488 0.91892 0.89234 0.88591 0.93032 0.92393 0.92810 0.76293 0.92072 0.90548 0.91157 0.89866 0.89417 0.88280 0.88212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 8.18 37.16 0.30 -1.98 16 2 C -0.11 -1.47 2.31 -90.62 -0.21 -1.68 16 3 C -0.14 -1.43 8.98 37.16 0.33 -1.10 16 4 C 0.15 2.21 2.31 -69.08 -0.16 2.05 16 5 H 0.11 1.26 8.07 -51.93 -0.42 0.84 16 6 C 0.49 9.98 6.36 -10.99 -0.07 9.91 16 7 O -0.51 -12.60 13.50 -4.28 -0.06 -12.66 16 8 N -0.71 -14.55 3.43 -54.93 -0.19 -14.73 16 9 C 0.25 6.16 2.20 -69.08 -0.15 6.01 16 10 H 0.08 2.39 7.63 -51.93 -0.40 1.99 16 11 C -0.55 -14.03 8.46 -34.44 -0.29 -14.32 16 12 H 0.08 1.82 7.74 -52.49 -0.41 1.41 16 13 C 0.07 1.71 5.20 -17.82 -0.09 1.62 16 14 N -0.84 -23.25 9.50 55.43 0.53 -22.72 16 15 Si 0.91 20.14 29.54 -169.99 -5.02 15.12 16 16 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 19 C 0.42 10.78 2.81 37.16 0.10 10.88 16 20 F -0.21 -5.17 16.94 2.25 0.04 -5.13 16 21 F -0.14 -3.84 12.91 2.25 0.03 -3.81 16 22 F -0.22 -5.61 15.53 2.25 0.03 -5.58 16 23 N -0.61 -8.46 2.05 -166.07 -0.34 -8.80 16 24 C 0.11 1.00 7.31 -3.12 -0.02 0.98 16 25 C -0.13 -1.08 7.18 -25.09 -0.18 -1.26 16 26 C -0.15 -1.65 6.85 -26.74 -0.18 -1.83 16 27 C 0.53 8.40 6.72 -10.71 -0.07 8.33 16 28 O -0.51 -10.57 15.32 -4.29 -0.07 -10.63 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.43 4.78 -51.93 -0.25 1.18 16 32 H 0.10 1.66 6.34 -51.93 -0.33 1.33 16 33 H 0.05 0.55 7.82 -51.93 -0.41 0.15 16 34 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.40 7.01 6.38 -40.82 -0.26 6.75 16 37 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 353.41 15.07 5.33 5.33 Total: -1.00 -33.72 353.41 -6.24 -39.96 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -5.83 Total: 6.08 kcal Atomic # 6 Polarization: 18.29 SS G_CDS: -0.69 Total: 17.60 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.00 Total: -46.26 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.12 Total: -23.29 kcal Atomic # 9 Polarization: -14.63 SS G_CDS: 0.10 Total: -14.53 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.72 -6.24 -39.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928811650.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.757 kcal (2) G-P(sol) polarization free energy of solvation -33.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds