Wall clock time and date at job start Sat Apr 11 2020 04:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47016 * 2 1 4 4 C 1.52995 * 109.47403 * 120.00893 * 2 1 3 5 5 H 1.09000 * 109.47084 * 304.48047 * 4 2 1 6 6 C 1.50702 * 109.47654 * 64.48324 * 4 2 1 7 7 O 1.21279 * 119.99851 * 98.27198 * 6 4 2 8 8 N 1.34775 * 119.99964 * 278.27871 * 6 4 2 9 9 C 1.46497 * 120.00098 * 175.14135 * 8 6 4 10 10 H 1.09004 * 109.47177 * 34.99622 * 9 8 6 11 11 C 1.50699 * 109.47154 * 154.99901 * 9 8 6 12 12 H 1.07997 * 119.99932 * 359.97438 * 11 9 8 13 13 C 1.37878 * 119.99579 * 179.97438 * 11 9 8 14 14 N 1.31513 * 120.00150 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99576 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47183 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47089 * 120.00330 * 15 13 11 18 18 H 1.48496 * 109.47089 * 239.99916 * 15 13 11 19 19 C 1.53006 * 109.47041 * 275.00038 * 9 8 6 20 20 F 1.39906 * 109.46990 * 299.99833 * 19 9 8 21 21 F 1.39898 * 109.47239 * 179.97438 * 19 9 8 22 22 F 1.39903 * 109.47170 * 59.99885 * 19 9 8 23 23 N 1.46504 * 109.47314 * 184.48761 * 4 2 1 24 24 C 1.46761 * 124.35172 * 119.99419 * 23 4 2 25 25 C 1.54484 * 105.47196 * 197.01662 * 24 23 4 26 26 C 1.54625 * 101.76508 * 334.58834 * 25 24 23 27 27 C 1.34419 * 124.34418 * 299.69731 * 23 4 2 28 28 O 1.21278 * 124.94574 * 359.56686 * 27 23 4 29 29 H 1.09000 * 109.46648 * 294.01982 * 1 2 3 30 30 H 1.08991 * 109.47412 * 54.02160 * 1 2 3 31 31 H 1.08999 * 109.46926 * 174.03227 * 1 2 3 32 32 H 1.09005 * 109.46650 * 240.00657 * 2 1 3 33 33 H 1.09007 * 109.47052 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47822 * 300.00456 * 3 2 1 35 35 H 1.09005 * 109.46874 * 60.00794 * 3 2 1 36 36 H 0.97005 * 119.99726 * 355.13647 * 8 6 4 37 37 H 0.97002 * 119.99792 * 180.02562 * 14 13 11 38 38 H 1.09002 * 110.24452 * 316.01839 * 24 23 4 39 39 H 1.09002 * 110.24396 * 78.01987 * 24 23 4 40 40 H 1.09000 * 110.96677 * 92.70540 * 25 24 23 41 41 H 1.08998 * 110.97102 * 216.46514 * 25 24 23 42 42 H 1.08998 * 110.48501 * 143.47681 * 26 25 24 43 43 H 1.09000 * 110.48427 * 265.98086 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 1 1.6127 -0.2562 2.1373 6 6 1.6306 -2.1707 1.1947 7 8 2.4181 -3.0094 0.8109 8 7 0.3891 -2.5348 1.5725 9 6 -0.0446 -3.9257 1.4198 10 1 0.7996 -4.5914 1.5995 11 6 -1.1388 -4.2226 2.4126 12 1 -1.4769 -3.4524 3.0899 13 6 -1.7081 -5.4776 2.4562 14 7 -1.2960 -6.4157 1.6318 15 14 -3.0639 -5.8458 3.6874 16 1 -3.3426 -4.6311 4.4948 17 1 -4.2948 -6.2507 2.9619 18 1 -2.6324 -6.9483 4.5838 19 6 -0.5718 -4.1426 -0.0002 20 9 -1.6553 -3.2882 -0.2309 21 9 -0.9855 -5.4710 -0.1462 22 9 0.4440 -3.8670 -0.9219 23 7 3.5011 -0.6285 1.3043 24 6 4.2502 -0.0003 2.3989 25 6 5.6672 0.2513 1.8374 26 6 5.7662 -0.8291 0.7357 27 6 4.3280 -1.1128 0.3617 28 8 3.9727 -1.6907 -0.6436 29 1 -0.3632 0.4183 0.9387 30 1 -0.3634 0.6037 -0.8315 31 1 -0.3633 -1.0221 -0.1068 32 1 1.8933 -0.5138 -0.8901 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 -0.2171 -1.8758 1.9456 37 1 -1.6968 -7.2985 1.6622 38 1 3.7837 0.9432 2.6824 39 1 4.2981 -0.6710 3.2568 40 1 5.7459 1.2514 1.4111 41 1 6.4246 0.0957 2.6056 42 1 6.3187 -0.4485 -0.1233 43 1 6.2417 -1.7291 1.1256 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928811652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:37:27 Heat of formation + Delta-G solvation = -206.825425 kcal Electronic energy + Delta-G solvation = -32299.836405 eV Core-core repulsion = 27544.838645 eV Total energy + Delta-G solvation = -4754.997760 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.30593 -45.95458 -45.57294 -40.69211 -38.63368 -36.20647 -35.58267 -34.62451 -32.52760 -31.64404 -28.89148 -27.51664 -26.96978 -26.45154 -24.53344 -22.07756 -21.74058 -20.77743 -20.13504 -18.92075 -17.57864 -16.96309 -16.78542 -16.58933 -16.52698 -16.10674 -15.44936 -15.23958 -14.88353 -14.41081 -14.25579 -13.86643 -13.54938 -13.45543 -13.12030 -12.95163 -12.85798 -12.72824 -12.62714 -12.48716 -12.35920 -12.29066 -12.22202 -12.11045 -11.91964 -11.77650 -11.58018 -11.24083 -11.12270 -11.09347 -10.96231 -10.86535 -10.72443 -10.68035 -10.39857 -9.62297 -9.45454 -9.25836 -8.71949 -8.36552 -8.18967 -6.22592 -4.46725 2.85678 3.01680 3.17103 3.24748 3.25251 3.28387 3.92513 4.21736 4.39056 4.40853 4.59685 4.69228 4.85735 4.91531 4.94661 5.05531 5.11732 5.25124 5.36867 5.40993 5.51458 5.56425 5.63535 5.71012 5.74308 5.85167 5.87286 5.88824 5.91717 5.95969 6.12858 6.25258 6.37524 6.43989 6.64615 6.98150 7.20925 7.34924 7.48516 7.64178 8.33508 8.49687 8.54658 8.94752 9.21211 10.68963 Molecular weight = 336.14amu Principal moments of inertia in cm(-1) A = 0.017336 B = 0.004119 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.740725 B = 6796.343460 C = 6954.292776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.103 4.103 3 C -0.136 4.136 4 C 0.150 3.850 5 H 0.103 0.897 6 C 0.493 3.507 7 O -0.506 6.506 8 N -0.712 5.712 9 C 0.246 3.754 10 H 0.084 0.916 11 C -0.551 4.551 12 H 0.077 0.923 13 C 0.064 3.936 14 N -0.839 5.839 15 Si 0.915 3.085 16 H -0.270 1.270 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.416 3.584 20 F -0.209 7.209 21 F -0.138 7.138 22 F -0.215 7.215 23 N -0.611 5.611 24 C 0.104 3.896 25 C -0.129 4.129 26 C -0.155 4.155 27 C 0.519 3.481 28 O -0.496 6.496 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.396 0.604 37 H 0.267 0.733 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.449 16.089 2.883 18.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.123 4.123 3 C -0.193 4.193 4 C 0.043 3.957 5 H 0.121 0.879 6 C 0.276 3.724 7 O -0.380 6.380 8 N -0.364 5.364 9 C 0.141 3.859 10 H 0.101 0.899 11 C -0.588 4.588 12 H 0.095 0.905 13 C -0.144 4.144 14 N -0.472 5.472 15 Si 0.741 3.259 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.206 1.206 19 C 0.360 3.640 20 F -0.191 7.191 21 F -0.119 7.119 22 F -0.197 7.197 23 N -0.346 5.346 24 C -0.019 4.019 25 C -0.167 4.167 26 C -0.196 4.196 27 C 0.306 3.694 28 O -0.368 6.368 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.231 0.769 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.115 0.885 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.747 14.908 1.934 17.392 hybrid contribution -1.192 -0.051 0.592 1.332 sum 7.555 14.857 2.526 16.858 Atomic orbital electron populations 1.21966 0.93756 1.03628 1.01977 1.21371 0.96525 0.96296 0.98112 1.21736 1.00977 0.95048 1.01546 1.20908 0.80159 0.94208 1.00381 0.87946 1.20725 0.82819 0.90499 0.78359 1.90757 1.51005 1.52038 1.44182 1.46121 1.14038 1.12196 1.63999 1.19681 0.98100 0.80166 0.87998 0.89886 1.20899 1.20385 0.98217 1.19276 0.90468 1.25094 0.97509 0.95968 0.95879 1.70423 1.40594 1.03474 1.32720 0.86170 0.80788 0.78541 0.80381 1.19416 1.20576 1.20603 1.23128 0.74838 0.75203 0.90823 1.92979 1.58285 1.72032 1.95849 1.93399 1.90056 1.32576 1.95851 1.93098 1.61319 1.93974 1.71347 1.47939 1.04476 1.59499 1.22726 1.22058 0.91864 0.97976 0.89973 1.22552 0.96335 0.99289 0.98516 1.22319 0.95807 1.00893 1.00542 1.20661 0.87990 0.77697 0.83043 1.90767 1.80657 1.38913 1.26501 0.92401 0.91998 0.91090 0.89154 0.92779 0.92516 0.92798 0.76948 0.92197 0.90506 0.91266 0.90160 0.89397 0.88479 0.88071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 8.30 37.16 0.31 -1.79 16 2 C -0.10 -1.47 2.28 -90.62 -0.21 -1.68 16 3 C -0.14 -1.45 8.99 37.16 0.33 -1.12 16 4 C 0.15 2.24 2.26 -69.08 -0.16 2.08 16 5 H 0.10 1.19 8.07 -51.93 -0.42 0.77 16 6 C 0.49 9.98 5.99 -10.98 -0.07 9.91 16 7 O -0.51 -12.61 12.82 -16.31 -0.21 -12.82 16 8 N -0.71 -14.55 3.76 -54.93 -0.21 -14.76 16 9 C 0.25 6.19 2.22 -69.08 -0.15 6.04 16 10 H 0.08 2.38 7.51 -51.93 -0.39 1.99 16 11 C -0.55 -14.03 8.47 -34.44 -0.29 -14.32 16 12 H 0.08 1.84 7.74 -52.49 -0.41 1.44 16 13 C 0.06 1.68 5.20 -17.82 -0.09 1.59 16 14 N -0.84 -23.32 9.50 55.43 0.53 -22.79 16 15 Si 0.91 20.11 29.54 -169.99 -5.02 15.09 16 16 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 C 0.42 10.93 2.81 37.16 0.10 11.04 16 20 F -0.21 -5.19 16.70 2.25 0.04 -5.15 16 21 F -0.14 -3.92 12.91 2.25 0.03 -3.89 16 22 F -0.22 -5.79 15.87 2.25 0.04 -5.75 16 23 N -0.61 -8.40 1.84 -166.16 -0.31 -8.70 16 24 C 0.10 0.93 7.30 -3.12 -0.02 0.91 16 25 C -0.13 -0.92 7.18 -25.10 -0.18 -1.10 16 26 C -0.16 -1.65 6.86 -26.74 -0.18 -1.84 16 27 C 0.52 8.39 6.66 -10.86 -0.07 8.32 16 28 O -0.50 -10.67 14.74 -16.31 -0.24 -10.91 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.20 6.34 -51.93 -0.33 0.87 16 32 H 0.09 1.64 6.97 -51.93 -0.36 1.28 16 33 H 0.05 0.59 7.37 -51.93 -0.38 0.20 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.40 6.90 7.87 -40.82 -0.32 6.58 16 37 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 355.10 15.07 5.35 5.35 Total: -1.00 -34.45 355.10 -6.65 -41.10 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -5.97 Total: 5.19 kcal Atomic # 6 Polarization: 18.72 SS G_CDS: -0.68 Total: 18.04 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.01 Total: -46.25 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.45 Total: -23.72 kcal Atomic # 9 Polarization: -14.90 SS G_CDS: 0.10 Total: -14.80 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.45 -6.65 -41.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928811652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.727 kcal (2) G-P(sol) polarization free energy of solvation -34.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds