Wall clock time and date at job start Sat Apr 11 2020 04:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47296 * 2 1 4 4 N 1.46499 * 109.47111 * 185.69550 * 3 2 1 5 5 C 1.36903 * 120.00077 * 278.25536 * 4 3 2 6 6 H 1.07996 * 120.00344 * 140.19501 * 5 4 3 7 7 C 1.39024 * 119.99885 * 320.19705 * 5 4 3 8 8 N 1.31381 * 120.00028 * 166.51173 * 7 5 4 9 9 Si 1.86801 * 119.99965 * 346.50986 * 7 5 4 10 10 H 1.48500 * 109.47051 * 89.76291 * 9 7 5 11 11 H 1.48503 * 109.47487 * 209.76339 * 9 7 5 12 12 H 1.48501 * 109.47187 * 329.76276 * 9 7 5 13 13 C 1.34773 * 120.00529 * 98.25843 * 4 3 2 14 14 O 1.21623 * 120.00449 * 186.43489 * 13 4 3 15 15 C 1.47502 * 119.99907 * 6.43399 * 13 4 3 16 16 C 1.39776 * 120.07495 * 315.25029 * 15 13 4 17 17 C 1.37774 * 119.99822 * 179.97438 * 16 15 13 18 18 C 1.38844 * 120.15615 * 359.97438 * 17 16 15 19 19 O 1.35797 * 119.92454 * 180.02562 * 18 17 16 20 20 C 1.42901 * 116.99900 * 0.02562 * 19 18 17 21 21 C 1.50700 * 109.47050 * 180.02562 * 20 19 18 22 22 N 1.34779 * 120.00054 * 180.02562 * 21 20 19 23 23 O 1.21285 * 120.00208 * 359.97438 * 21 20 19 24 24 C 1.39423 * 120.15243 * 0.02562 * 18 17 16 25 25 O 1.35996 * 120.00104 * 179.97438 * 24 18 17 26 26 C 1.42897 * 117.00359 * 180.02562 * 25 24 18 27 27 C 1.38118 * 120.00099 * 0.23691 * 24 18 17 28 28 H 1.09001 * 109.46977 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46990 * 300.00190 * 1 2 3 30 30 H 1.08995 * 109.46933 * 59.99948 * 1 2 3 31 31 H 1.08998 * 109.47291 * 239.99801 * 2 1 3 32 32 H 1.09005 * 109.47371 * 119.99826 * 2 1 3 33 33 H 1.08998 * 109.47528 * 65.69486 * 3 2 1 34 34 H 1.08999 * 109.47045 * 305.69310 * 3 2 1 35 35 H 0.97005 * 119.99580 * 180.02562 * 8 7 5 36 36 H 1.07998 * 120.00306 * 359.94909 * 16 15 13 37 37 H 1.08001 * 119.92003 * 179.97438 * 17 16 15 38 38 H 1.08995 * 109.46918 * 300.00012 * 20 19 18 39 39 H 1.08996 * 109.46850 * 60.00246 * 20 19 18 40 40 H 0.96992 * 119.99756 * 359.97438 * 22 21 20 41 41 H 0.97000 * 120.00115 * 179.97438 * 22 21 20 42 42 H 1.09007 * 109.47325 * 179.97438 * 26 25 24 43 43 H 1.09004 * 109.46841 * 60.00191 * 26 25 24 44 44 H 1.08994 * 109.47225 * 300.00186 * 26 25 24 45 45 H 1.08005 * 120.07925 * 179.74645 * 27 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4986 1.4447 -0.1371 5 6 4.2896 1.2368 0.9608 6 1 5.1790 0.6297 0.8784 7 6 3.9480 1.8071 2.1817 8 7 4.5400 1.4047 3.2834 9 14 2.6472 3.1458 2.2559 10 1 1.3108 2.5273 2.4470 11 1 2.9383 4.0565 3.3923 12 1 2.6586 3.9179 0.9875 13 6 4.0618 1.6515 -1.3439 14 8 5.2649 1.5377 -1.4811 15 6 3.2191 2.0158 -2.4984 16 6 2.0216 1.3344 -2.7342 17 6 1.2354 1.6764 -3.8128 18 6 1.6292 2.6976 -4.6671 19 8 0.8505 3.0310 -5.7284 20 6 -0.3588 2.2902 -5.9039 21 6 -1.0855 2.7962 -7.1233 22 7 -2.2594 2.2425 -7.4864 23 8 -0.6144 3.7025 -7.7774 24 6 2.8224 3.3814 -4.4378 25 8 3.2054 4.3808 -5.2768 26 6 4.4395 5.0381 -4.9822 27 6 3.6181 3.0403 -3.3616 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.7624 1.9261 0.9365 34 1 1.5958 1.9849 -0.8346 35 1 4.3013 1.8024 4.1353 36 1 1.7129 0.5397 -2.0714 37 1 0.3107 1.1488 -3.9941 38 1 -0.1222 1.2343 -6.0345 39 1 -0.9919 2.4148 -5.0254 40 1 -2.6362 1.5180 -6.9631 41 1 -2.7273 2.5685 -8.2711 42 1 4.6261 5.8117 -5.7272 43 1 5.2519 4.3116 -5.0021 44 1 4.3822 5.4921 -3.9929 45 1 4.5447 3.5665 -3.1852 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056484708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:36:46 Heat of formation + Delta-G solvation = -89.467721 kcal Electronic energy + Delta-G solvation = -29787.310209 eV Core-core repulsion = 25579.258201 eV Total energy + Delta-G solvation = -4208.052008 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.78339 -39.81734 -38.98333 -38.20909 -36.25023 -35.72599 -34.11448 -32.97397 -31.68408 -30.48523 -30.27536 -28.42661 -27.31951 -26.01619 -25.09894 -22.74104 -22.50721 -21.51463 -20.93720 -19.66325 -18.60826 -17.98161 -17.44177 -17.04113 -16.67628 -16.62528 -16.34236 -15.89505 -15.66826 -15.50951 -15.00973 -14.44541 -14.40738 -14.32375 -14.03465 -13.81445 -13.40442 -13.26965 -12.76864 -12.65574 -12.53798 -12.37096 -12.15267 -11.97743 -11.69764 -11.40103 -11.25714 -11.23682 -11.00637 -10.96321 -10.68999 -10.55666 -10.27200 -10.14101 -10.09400 -9.78829 -9.13423 -8.71029 -8.60808 -7.81965 -7.70261 -6.43948 -4.06356 1.22411 1.44522 2.20727 2.44703 2.96474 3.16186 3.19220 3.32588 3.46824 3.55909 3.99915 4.06844 4.33219 4.37581 4.63086 4.71123 4.83039 4.85616 5.03802 5.13524 5.28270 5.29239 5.31356 5.37934 5.42258 5.45953 5.60409 5.65479 5.70743 5.76572 5.96451 6.07693 6.17940 6.23903 6.24573 6.31380 6.46483 6.59528 6.64886 6.77581 6.79747 7.01960 7.49978 7.57725 7.83417 8.21183 8.43806 8.86277 9.22548 9.67018 10.67327 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.013803 B = 0.003571 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.077815 B = 7838.772819 C = 8997.268552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.140 4.140 3 C 0.077 3.923 4 N -0.455 5.455 5 C -0.311 4.311 6 H 0.109 0.891 7 C 0.061 3.939 8 N -0.865 5.865 9 Si 0.885 3.115 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.504 3.496 14 O -0.558 6.558 15 C -0.095 4.095 16 C -0.111 4.111 17 C -0.180 4.180 18 C 0.098 3.902 19 O -0.279 6.279 20 C 0.037 3.963 21 C 0.520 3.480 22 N -0.853 5.853 23 O -0.515 6.515 24 C 0.099 3.901 25 O -0.306 6.306 26 C 0.024 3.976 27 C -0.130 4.130 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.275 0.725 36 H 0.148 0.852 37 H 0.135 0.865 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.403 0.597 41 H 0.407 0.593 42 H 0.099 0.901 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.850 -0.104 -15.112 21.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.178 4.178 3 C -0.046 4.046 4 N -0.175 5.175 5 C -0.438 4.438 6 H 0.126 0.874 7 C -0.146 4.146 8 N -0.501 5.501 9 Si 0.714 3.286 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.190 1.190 13 C 0.293 3.707 14 O -0.440 6.440 15 C -0.099 4.099 16 C -0.129 4.129 17 C -0.198 4.198 18 C 0.052 3.948 19 O -0.192 6.192 20 C -0.042 4.042 21 C 0.303 3.697 22 N -0.420 5.420 23 O -0.389 6.389 24 C 0.054 3.946 25 O -0.219 6.219 26 C -0.071 4.071 27 C -0.149 4.149 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.165 0.835 37 H 0.153 0.847 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.231 0.769 41 H 0.239 0.761 42 H 0.117 0.883 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.758 0.695 -15.541 21.443 hybrid contribution -1.092 0.263 0.555 1.253 sum -15.850 0.958 -14.986 21.834 Atomic orbital electron populations 1.21771 0.95989 1.01501 1.01677 1.21955 0.94939 0.97632 1.03310 1.22215 0.83421 0.97093 1.01879 1.43632 1.04031 1.62465 1.07387 1.19081 1.08977 1.30721 0.85024 0.87377 1.25389 0.97447 0.96553 0.95171 1.69655 1.41867 1.40336 0.98262 0.86867 0.80893 0.82555 0.78291 1.19856 1.21612 1.18998 1.18072 0.87314 0.82112 0.83211 1.90672 1.14618 1.54569 1.84118 1.20096 0.95685 0.97174 0.96897 1.21673 0.93428 1.00581 0.97256 1.20910 1.02259 0.99461 0.97201 1.18293 0.90562 0.96402 0.89550 1.86190 1.31389 1.57439 1.44180 1.22425 0.87274 0.97073 0.97429 1.20115 0.81274 0.82573 0.85757 1.43658 1.23785 1.40917 1.33612 1.90825 1.65874 1.28413 1.53755 1.18005 0.92776 0.91696 0.92141 1.86174 1.39855 1.46359 1.49525 1.23095 0.84662 0.97077 1.02276 1.21085 1.00295 0.99565 0.94002 0.92573 0.92681 0.92922 0.91554 0.90132 0.91892 0.90409 0.91423 0.83463 0.84702 0.88821 0.88813 0.76883 0.76097 0.88290 0.92382 0.92550 0.83928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.86 37.16 0.37 -1.49 16 2 C -0.14 -2.29 5.25 -26.73 -0.14 -2.43 16 3 C 0.08 1.51 3.88 -4.04 -0.02 1.49 16 4 N -0.46 -10.90 2.20 -116.01 -0.26 -11.15 16 5 C -0.31 -8.63 9.36 -15.00 -0.14 -8.77 16 6 H 0.11 3.38 7.90 -52.49 -0.41 2.97 16 7 C 0.06 1.64 5.43 -17.45 -0.09 1.55 16 8 N -0.87 -24.59 13.96 55.50 0.77 -23.82 16 9 Si 0.88 20.45 24.77 -169.99 -4.21 16.24 16 10 H -0.27 -5.74 6.64 56.52 0.38 -5.37 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.13 7.10 56.52 0.40 -5.73 16 13 C 0.50 12.00 7.22 -12.49 -0.09 11.91 16 14 O -0.56 -15.34 16.85 5.26 0.09 -15.25 16 15 C -0.09 -1.81 5.14 -104.97 -0.54 -2.35 16 16 C -0.11 -1.71 7.37 -39.18 -0.29 -2.00 16 17 C -0.18 -2.30 9.01 -39.53 -0.36 -2.65 16 18 C 0.10 1.46 6.71 -38.92 -0.26 1.20 16 19 O -0.28 -4.02 9.44 -46.78 -0.44 -4.46 16 20 C 0.04 0.33 5.21 36.01 0.19 0.52 16 21 C 0.52 5.09 8.18 -10.98 -0.09 5.00 16 22 N -0.85 -3.93 8.87 31.22 0.28 -3.65 16 23 O -0.52 -7.92 17.34 -14.36 -0.25 -8.17 16 24 C 0.10 1.65 6.69 -39.18 -0.26 1.39 16 25 O -0.31 -4.92 10.28 -34.38 -0.35 -5.27 16 26 C 0.02 0.29 9.81 101.05 0.99 1.29 16 27 C -0.13 -2.31 8.66 -39.05 -0.34 -2.65 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.54 8.12 -51.93 -0.42 0.12 16 31 H 0.07 1.02 6.31 -51.93 -0.33 0.70 16 32 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.06 1.32 2.39 -51.93 -0.12 1.19 16 34 H 0.08 1.36 4.94 -51.93 -0.26 1.10 16 35 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.15 2.12 3.58 -52.49 -0.19 1.93 16 37 H 0.14 1.14 6.27 -52.49 -0.33 0.81 16 38 H 0.09 0.58 7.65 -51.93 -0.40 0.18 16 39 H 0.09 0.58 7.65 -51.93 -0.40 0.18 16 40 H 0.40 0.44 8.83 -40.82 -0.36 0.08 16 41 H 0.41 1.55 8.93 -40.82 -0.36 1.18 16 42 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.06 0.68 7.65 -51.93 -0.40 0.28 16 44 H 0.06 0.66 7.67 -51.93 -0.40 0.26 16 45 H 0.14 2.49 6.28 -52.48 -0.33 2.16 16 LS Contribution 367.37 15.07 5.54 5.54 Total: -1.00 -37.89 367.37 -5.46 -43.35 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.56 Total: 4.68 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -1.07 Total: 1.98 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.80 Total: -38.62 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -0.96 Total: -33.16 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.21 Total: 16.24 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.89 -5.46 -43.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056484708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.116 kcal (2) G-P(sol) polarization free energy of solvation -37.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds