Wall clock time and date at job start Sat Apr 11 2020 04:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47296 * 2 1 4 4 N 1.46499 * 109.47111 * 185.69550 * 3 2 1 5 5 C 1.36903 * 120.00077 * 278.25536 * 4 3 2 6 6 H 1.07996 * 120.00344 * 140.19501 * 5 4 3 7 7 C 1.39024 * 119.99885 * 320.19705 * 5 4 3 8 8 N 1.31381 * 120.00028 * 166.51173 * 7 5 4 9 9 Si 1.86801 * 119.99965 * 346.50986 * 7 5 4 10 10 H 1.48500 * 109.47051 * 89.76291 * 9 7 5 11 11 H 1.48503 * 109.47487 * 209.76339 * 9 7 5 12 12 H 1.48501 * 109.47187 * 329.76276 * 9 7 5 13 13 C 1.34773 * 120.00529 * 98.25843 * 4 3 2 14 14 O 1.21623 * 120.00449 * 186.43489 * 13 4 3 15 15 C 1.47502 * 119.99907 * 6.43399 * 13 4 3 16 16 C 1.39776 * 120.07495 * 315.25029 * 15 13 4 17 17 C 1.37774 * 119.99822 * 179.97438 * 16 15 13 18 18 C 1.38844 * 120.15615 * 359.97438 * 17 16 15 19 19 O 1.35797 * 119.92454 * 180.02562 * 18 17 16 20 20 C 1.42901 * 116.99900 * 0.02562 * 19 18 17 21 21 C 1.50700 * 109.47050 * 180.02562 * 20 19 18 22 22 N 1.34779 * 120.00054 * 180.02562 * 21 20 19 23 23 O 1.21285 * 120.00208 * 359.97438 * 21 20 19 24 24 C 1.39423 * 120.15243 * 0.02562 * 18 17 16 25 25 O 1.35996 * 120.00104 * 179.97438 * 24 18 17 26 26 C 1.42897 * 117.00359 * 180.02562 * 25 24 18 27 27 C 1.38118 * 120.00099 * 0.23691 * 24 18 17 28 28 H 1.09001 * 109.46977 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46990 * 300.00190 * 1 2 3 30 30 H 1.08995 * 109.46933 * 59.99948 * 1 2 3 31 31 H 1.08998 * 109.47291 * 239.99801 * 2 1 3 32 32 H 1.09005 * 109.47371 * 119.99826 * 2 1 3 33 33 H 1.08998 * 109.47528 * 65.69486 * 3 2 1 34 34 H 1.08999 * 109.47045 * 305.69310 * 3 2 1 35 35 H 0.97005 * 119.99580 * 180.02562 * 8 7 5 36 36 H 1.07998 * 120.00306 * 359.94909 * 16 15 13 37 37 H 1.08001 * 119.92003 * 179.97438 * 17 16 15 38 38 H 1.08995 * 109.46918 * 300.00012 * 20 19 18 39 39 H 1.08996 * 109.46850 * 60.00246 * 20 19 18 40 40 H 0.96992 * 119.99756 * 359.97438 * 22 21 20 41 41 H 0.97000 * 120.00115 * 179.97438 * 22 21 20 42 42 H 1.09007 * 109.47325 * 179.97438 * 26 25 24 43 43 H 1.09004 * 109.46841 * 60.00191 * 26 25 24 44 44 H 1.08994 * 109.47225 * 300.00186 * 26 25 24 45 45 H 1.08005 * 120.07925 * 179.74645 * 27 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4986 1.4447 -0.1371 5 6 4.2896 1.2368 0.9608 6 1 5.1790 0.6297 0.8784 7 6 3.9480 1.8071 2.1817 8 7 4.5400 1.4047 3.2834 9 14 2.6472 3.1458 2.2559 10 1 1.3108 2.5273 2.4470 11 1 2.9383 4.0565 3.3923 12 1 2.6586 3.9179 0.9875 13 6 4.0618 1.6515 -1.3439 14 8 5.2649 1.5377 -1.4811 15 6 3.2191 2.0158 -2.4984 16 6 2.0216 1.3344 -2.7342 17 6 1.2354 1.6764 -3.8128 18 6 1.6292 2.6976 -4.6671 19 8 0.8505 3.0310 -5.7284 20 6 -0.3588 2.2902 -5.9039 21 6 -1.0855 2.7962 -7.1233 22 7 -2.2594 2.2425 -7.4864 23 8 -0.6144 3.7025 -7.7774 24 6 2.8224 3.3814 -4.4378 25 8 3.2054 4.3808 -5.2768 26 6 4.4395 5.0381 -4.9822 27 6 3.6181 3.0403 -3.3616 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.7624 1.9261 0.9365 34 1 1.5958 1.9849 -0.8346 35 1 4.3013 1.8024 4.1353 36 1 1.7129 0.5397 -2.0714 37 1 0.3107 1.1488 -3.9941 38 1 -0.1222 1.2343 -6.0345 39 1 -0.9919 2.4148 -5.0254 40 1 -2.6362 1.5180 -6.9631 41 1 -2.7273 2.5685 -8.2711 42 1 4.6261 5.8117 -5.7272 43 1 5.2519 4.3116 -5.0021 44 1 4.3822 5.4921 -3.9929 45 1 4.5447 3.5665 -3.1852 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056484708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:36:45 Heat of formation + Delta-G solvation = -119.970674 kcal Electronic energy + Delta-G solvation = -29788.632916 eV Core-core repulsion = 25579.258201 eV Total energy + Delta-G solvation = -4209.374715 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.96605 -40.91577 -40.34460 -39.22219 -37.55684 -37.47185 -34.74311 -34.71931 -33.41297 -31.66822 -31.45748 -29.32410 -28.45246 -27.43724 -26.83631 -24.13114 -23.57932 -22.79515 -21.77844 -21.15815 -19.67880 -19.03887 -18.78781 -18.63401 -17.82690 -17.47456 -17.43132 -17.16712 -17.12915 -16.60308 -16.34500 -15.93141 -15.65933 -15.34398 -15.23725 -15.20216 -14.75962 -14.55554 -14.36090 -14.02044 -13.66527 -13.65093 -13.47635 -13.38057 -13.15320 -12.63228 -12.53521 -12.41288 -12.22070 -12.14480 -12.09568 -11.88981 -11.86557 -11.42139 -11.06804 -11.02402 -10.69602 -10.53186 -9.88154 -9.73720 -8.90869 -8.53388 -6.22368 -0.05771 0.25213 1.13469 1.27815 1.38394 1.54411 1.68647 1.84876 2.12356 2.26812 2.50631 2.71619 2.85167 2.88942 3.67824 3.72152 3.85925 3.92218 3.99601 4.07173 4.15305 4.19600 4.20819 4.22979 4.31384 4.37524 4.40271 4.57015 4.58829 4.63403 4.66325 4.91986 4.98923 5.08125 5.21549 5.32641 5.33276 5.45362 5.50601 5.59592 5.84176 5.98321 5.99800 6.39345 6.50673 6.52891 6.84151 7.19789 7.32168 7.74938 8.63044 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.013803 B = 0.003571 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.077815 B = 7838.772819 C = 8997.268552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.137 4.137 3 C 0.071 3.929 4 N -0.464 5.464 5 C -0.328 4.328 6 H 0.047 0.953 7 C 0.015 3.985 8 N -0.911 5.911 9 Si 0.950 3.050 10 H -0.230 1.230 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.501 3.499 14 O -0.615 6.615 15 C -0.127 4.127 16 C -0.100 4.100 17 C -0.155 4.155 18 C 0.111 3.889 19 O -0.305 6.305 20 C 0.023 3.977 21 C 0.516 3.484 22 N -0.825 5.825 23 O -0.585 6.585 24 C 0.084 3.916 25 O -0.321 6.321 26 C 0.018 3.982 27 C -0.139 4.139 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.107 0.893 35 H 0.281 0.719 36 H 0.162 0.838 37 H 0.196 0.804 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.424 0.576 41 H 0.413 0.587 42 H 0.126 0.874 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.380 -0.363 -16.885 27.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C -0.050 4.050 4 N -0.184 5.184 5 C -0.456 4.456 6 H 0.065 0.935 7 C -0.187 4.187 8 N -0.549 5.549 9 Si 0.774 3.226 10 H -0.155 1.155 11 H -0.217 1.217 12 H -0.190 1.190 13 C 0.291 3.709 14 O -0.500 6.500 15 C -0.130 4.130 16 C -0.119 4.119 17 C -0.173 4.173 18 C 0.065 3.935 19 O -0.218 6.218 20 C -0.054 4.054 21 C 0.301 3.699 22 N -0.392 5.392 23 O -0.464 6.464 24 C 0.039 3.961 25 O -0.235 6.235 26 C -0.076 4.076 27 C -0.159 4.159 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.125 0.875 35 H 0.091 0.909 36 H 0.179 0.821 37 H 0.213 0.787 38 H 0.149 0.851 39 H 0.152 0.848 40 H 0.256 0.744 41 H 0.246 0.754 42 H 0.144 0.856 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.387 0.368 -17.309 26.746 hybrid contribution 0.618 0.277 0.906 1.131 sum -19.769 0.645 -16.404 25.696 Atomic orbital electron populations 1.21769 0.91860 1.03479 1.03148 1.21931 0.98367 0.94947 1.02263 1.22518 0.80394 0.99672 1.02410 1.43720 1.05855 1.62543 1.06264 1.18646 1.08530 1.31214 0.87226 0.93465 1.26136 1.00113 0.98383 0.94081 1.69777 1.44153 1.41877 0.99069 0.85839 0.79759 0.78952 0.78001 1.15463 1.21658 1.18991 1.18875 0.87264 0.80327 0.84394 1.90617 1.17483 1.56620 1.85324 1.19713 0.97316 0.99782 0.96205 1.21805 0.91859 0.99950 0.98250 1.21381 1.03300 0.98010 0.94608 1.18485 0.89722 0.95698 0.89591 1.86177 1.33259 1.58788 1.43606 1.22953 0.85749 0.98270 0.98444 1.20451 0.82054 0.81803 0.85622 1.43461 1.21940 1.40324 1.33439 1.90811 1.67905 1.31697 1.56030 1.18196 0.93727 0.92338 0.91882 1.86156 1.41170 1.46470 1.49752 1.23308 0.83515 0.97478 1.03302 1.20957 1.00407 0.99783 0.94724 0.90435 0.92966 0.89692 0.90764 0.93307 0.92910 0.87524 0.90889 0.82085 0.78742 0.85069 0.84828 0.74366 0.75427 0.85584 0.92581 0.92529 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.86 71.98 0.71 -2.08 16 2 C -0.14 -4.15 5.25 30.59 0.16 -3.99 16 3 C 0.07 2.67 3.88 86.38 0.34 3.00 16 4 N -0.46 -22.91 2.20 -639.18 -1.41 -24.32 16 5 C -0.33 -19.47 9.36 84.09 0.79 -18.68 16 6 H 0.05 3.29 7.90 -2.91 -0.02 3.26 16 7 C 0.02 0.86 5.43 84.95 0.46 1.32 16 8 N -0.91 -54.37 13.96 21.68 0.30 -54.07 16 9 Si 0.95 42.20 24.77 68.60 1.70 43.90 16 10 H -0.23 -8.67 6.64 99.48 0.66 -8.01 16 11 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.27 -11.70 7.10 99.48 0.71 -11.00 16 13 C 0.50 24.86 7.22 86.69 0.63 25.49 16 14 O -0.61 -36.46 16.85 -4.10 -0.07 -36.53 16 15 C -0.13 -4.79 5.14 -20.09 -0.10 -4.90 16 16 C -0.10 -2.72 7.37 22.53 0.17 -2.56 16 17 C -0.15 -3.04 9.01 22.31 0.20 -2.84 16 18 C 0.11 2.90 6.71 22.70 0.15 3.05 16 19 O -0.31 -7.59 9.44 -64.81 -0.61 -8.20 16 20 C 0.02 0.28 5.21 71.24 0.37 0.65 16 21 C 0.52 8.18 8.18 87.66 0.72 8.89 16 22 N -0.82 -3.91 8.87 -173.53 -1.54 -5.45 16 23 O -0.59 -17.14 17.34 15.99 0.28 -16.86 16 24 C 0.08 2.69 6.69 22.53 0.15 2.84 16 25 O -0.32 -10.17 10.28 -79.49 -0.82 -10.99 16 26 C 0.02 0.45 9.81 113.37 1.11 1.57 16 27 C -0.14 -4.99 8.66 22.62 0.20 -4.80 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.08 1.12 8.12 -2.39 -0.02 1.10 16 31 H 0.07 2.11 6.31 -2.39 -0.02 2.09 16 32 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.05 2.08 2.39 -2.39 -0.01 2.07 16 34 H 0.11 3.34 4.94 -2.39 -0.01 3.33 16 35 H 0.28 15.35 8.31 -92.70 -0.77 14.58 16 36 H 0.16 3.91 3.58 -2.91 -0.01 3.90 16 37 H 0.20 1.46 6.27 -2.91 -0.02 1.44 16 38 H 0.13 0.61 7.65 -2.39 -0.02 0.60 16 39 H 0.13 0.57 7.65 -2.39 -0.02 0.55 16 40 H 0.42 -1.51 8.83 -92.71 -0.82 -2.33 16 41 H 0.41 1.66 8.93 -92.71 -0.83 0.83 16 42 H 0.13 2.32 8.14 -2.38 -0.02 2.30 16 43 H 0.06 1.37 7.65 -2.39 -0.02 1.36 16 44 H 0.06 1.36 7.67 -2.39 -0.02 1.35 16 45 H 0.13 4.81 6.28 -2.91 -0.02 4.79 16 Total: -1.00 -94.72 367.37 3.26 -91.46 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -0.62 Total: 14.11 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 6.04 Total: 6.96 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -2.65 Total: -83.84 kcal Atomic # 8 Polarization: -71.37 SS G_CDS: -1.22 Total: -72.59 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 1.70 Total: 43.90 kcal Total: -94.72 3.26 -91.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056484708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.515 kcal (2) G-P(sol) polarization free energy of solvation -94.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds