Wall clock time and date at job start Sat Apr 11 2020 04:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 C 1.50706 * 109.46573 * 180.02562 * 3 2 1 5 5 O 1.21274 * 120.00042 * 359.72068 * 4 3 2 6 6 N 1.34777 * 119.99766 * 179.97438 * 4 3 2 7 7 C 1.47433 * 125.64688 * 0.02779 * 6 4 3 8 8 C 1.54910 * 104.82934 * 204.08751 * 7 6 4 9 9 C 1.55155 * 101.58418 * 322.98996 * 8 7 6 10 10 C 1.47021 * 125.64871 * 179.71262 * 6 4 3 11 11 H 1.08996 * 109.87837 * 59.56845 * 10 6 4 12 12 C 1.50697 * 109.88249 * 298.39886 * 10 6 4 13 13 O 1.21277 * 120.00137 * 0.02562 * 12 10 6 14 14 N 1.34786 * 119.99766 * 179.97438 * 12 10 6 15 15 C 1.46497 * 119.99588 * 180.02562 * 14 12 10 16 16 H 1.08994 * 109.47540 * 324.99348 * 15 14 12 17 17 C 1.50706 * 109.46722 * 204.99393 * 15 14 12 18 18 H 1.08003 * 119.99882 * 0.02562 * 17 15 14 19 19 C 1.37878 * 120.00099 * 179.97438 * 17 15 14 20 20 N 1.31516 * 119.99769 * 0.02562 * 19 17 15 21 21 Si 1.86789 * 120.00212 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47370 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47394 * 120.00496 * 21 19 17 24 24 H 1.48505 * 109.47487 * 240.00500 * 21 19 17 25 25 C 1.53003 * 109.47243 * 85.00210 * 15 14 12 26 26 F 1.39898 * 109.47138 * 59.99455 * 25 15 14 27 27 F 1.39900 * 109.47234 * 179.97438 * 25 15 14 28 28 F 1.39896 * 109.46779 * 299.99510 * 25 15 14 29 29 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 31 31 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 32 32 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 33 33 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 34 34 H 1.09000 * 109.47486 * 60.00167 * 3 2 1 35 35 H 1.09001 * 109.47362 * 299.99445 * 3 2 1 36 36 H 1.08994 * 110.36728 * 322.92805 * 7 6 4 37 37 H 1.08997 * 110.36547 * 85.14244 * 7 6 4 38 38 H 1.08997 * 111.00154 * 81.06538 * 8 7 6 39 39 H 1.08998 * 111.00116 * 204.91856 * 8 7 6 40 40 H 1.08999 * 110.72029 * 153.86208 * 9 8 7 41 41 H 1.08999 * 110.72317 * 276.95997 * 9 8 7 42 42 H 0.97003 * 119.99857 * 359.97438 * 14 12 10 43 43 H 0.97002 * 120.00262 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 8 4.1534 0.3921 0.0041 6 7 4.2210 2.6096 -0.0013 7 6 3.6131 3.9527 -0.0008 8 6 4.6946 4.8776 -0.6130 9 6 5.9950 4.2656 -0.0285 10 6 5.6841 2.7542 0.0041 11 1 6.1074 2.2716 -0.8767 12 6 6.2555 2.1374 1.2546 13 8 5.5181 1.6235 2.0688 14 7 7.5863 2.1561 1.4678 15 6 8.1418 1.5560 2.6833 16 1 7.4524 1.7114 3.5131 17 6 9.4656 2.2016 3.0024 18 1 9.8540 2.9813 2.3638 19 6 10.1805 1.7978 4.1100 20 7 9.7073 0.8487 4.8878 21 14 11.8209 2.5985 4.5059 22 1 12.1272 3.6313 3.4837 23 1 11.7508 3.2345 5.8460 24 1 12.8890 1.5667 4.5031 25 6 8.3460 0.0556 2.4639 26 9 9.2309 -0.1438 1.3989 27 9 8.8771 -0.5174 3.6244 28 9 7.1172 -0.5438 2.1676 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 2.7134 3.9621 -0.6160 37 1 3.3787 4.2627 1.0175 38 1 4.6894 4.8176 -1.7013 39 1 4.5628 5.9068 -0.2792 40 1 6.8449 4.4729 -0.6787 41 1 6.1802 4.6421 0.9776 42 1 8.1762 2.5662 0.8160 43 1 10.2103 0.5642 5.6669 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928811442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:37:55 Heat of formation + Delta-G solvation = -214.873090 kcal Electronic energy + Delta-G solvation = -31351.433521 eV Core-core repulsion = 26596.086788 eV Total energy + Delta-G solvation = -4755.346733 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.24205 -45.88714 -45.52398 -40.41834 -38.45558 -37.07213 -34.59603 -34.30895 -32.62182 -31.66018 -30.05057 -28.14810 -27.54790 -24.54594 -24.02157 -22.21611 -21.78181 -21.04858 -19.94095 -18.98511 -17.63000 -17.05574 -16.75023 -16.72463 -16.49549 -16.02898 -15.61237 -15.34575 -14.95724 -14.66710 -14.35106 -14.00471 -13.66784 -13.31478 -13.23156 -13.10701 -12.84512 -12.79869 -12.46763 -12.37601 -12.28095 -12.22041 -11.97968 -11.89473 -11.75654 -11.71661 -11.57783 -11.48478 -11.16148 -11.14885 -11.02194 -10.85329 -10.75889 -10.69312 -10.38639 -9.62088 -9.56450 -9.34014 -8.70869 -8.42499 -8.19604 -6.21403 -4.45515 2.80486 3.06022 3.17790 3.24683 3.26971 3.28667 3.90620 4.22291 4.35263 4.39145 4.67048 4.72986 4.82420 4.86624 4.96391 4.97520 5.13583 5.17708 5.27526 5.41816 5.42189 5.52889 5.55152 5.59695 5.66881 5.71689 5.76750 5.92328 5.95186 5.95639 6.03067 6.13052 6.24704 6.30630 6.35996 6.98337 7.23258 7.49528 7.63499 7.65237 8.34850 8.44788 8.52976 8.95986 9.22298 10.70191 Molecular weight = 336.14amu Principal moments of inertia in cm(-1) A = 0.016429 B = 0.003817 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.909252 B = 7334.452888 C = 8442.354864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.130 4.130 4 C 0.530 3.470 5 O -0.516 6.516 6 N -0.606 5.606 7 C 0.100 3.900 8 C -0.130 4.130 9 C -0.124 4.124 10 C 0.119 3.881 11 H 0.096 0.904 12 C 0.500 3.500 13 O -0.517 6.517 14 N -0.712 5.712 15 C 0.247 3.753 16 H 0.082 0.918 17 C -0.551 4.551 18 H 0.078 0.922 19 C 0.064 3.936 20 N -0.839 5.839 21 Si 0.915 3.085 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.416 3.584 26 F -0.210 7.210 27 F -0.139 7.139 28 F -0.212 7.212 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.397 0.603 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.414 8.726 -11.461 19.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.170 4.170 4 C 0.319 3.681 5 O -0.389 6.389 6 N -0.342 5.342 7 C -0.023 4.023 8 C -0.168 4.168 9 C -0.162 4.162 10 C 0.011 3.989 11 H 0.114 0.886 12 C 0.283 3.717 13 O -0.392 6.392 14 N -0.362 5.362 15 C 0.142 3.858 16 H 0.100 0.900 17 C -0.588 4.588 18 H 0.096 0.904 19 C -0.145 4.145 20 N -0.472 5.472 21 Si 0.742 3.258 22 H -0.194 1.194 23 H -0.206 1.206 24 H -0.206 1.206 25 C 0.359 3.641 26 F -0.192 7.192 27 F -0.120 7.120 28 F -0.194 7.194 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.230 0.770 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.658 7.507 -10.663 18.174 hybrid contribution 1.277 0.234 -0.033 1.299 sum -11.381 7.741 -10.695 17.431 Atomic orbital electron populations 1.21782 0.95643 1.01833 1.01530 1.21299 0.94986 0.94836 1.03831 1.21650 0.91588 1.00020 1.03775 1.20338 0.89857 0.82146 0.75763 1.90765 1.70116 1.30298 1.47766 1.48231 1.05172 1.06024 1.74795 1.22329 0.96702 0.82077 1.01173 1.22771 0.94044 0.99144 1.00860 1.22657 0.98700 0.91539 1.03331 1.21483 0.82645 0.97217 0.97546 0.88598 1.20665 0.83041 0.80094 0.87924 1.90696 1.58840 1.43603 1.46013 1.46006 1.06264 1.59462 1.24473 1.19678 0.97616 0.83988 0.84559 0.90001 1.20910 1.03215 1.22781 1.11925 0.90436 1.25097 0.99064 0.94463 0.95859 1.70429 1.38200 1.24806 1.13771 0.86167 0.82135 0.79153 0.78395 1.19403 1.20610 1.20585 1.23087 0.72391 0.94570 0.74021 1.92979 1.70638 1.96453 1.59162 1.93393 1.85525 1.86773 1.46305 1.93114 1.45706 1.86915 1.93693 0.92479 0.92721 0.92906 0.91341 0.90906 0.89099 0.89463 0.90406 0.91193 0.90330 0.89468 0.89006 0.89561 0.76990 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.11 -1.33 5.22 -26.73 -0.14 -1.47 16 3 C -0.13 -1.49 4.71 -27.88 -0.13 -1.63 16 4 C 0.53 8.69 7.01 -10.98 -0.08 8.61 16 5 O -0.52 -11.10 15.26 -8.38 -0.13 -11.23 16 6 N -0.61 -8.66 2.84 -164.31 -0.47 -9.13 16 7 C 0.10 0.94 6.69 -2.52 -0.02 0.92 16 8 C -0.13 -0.98 7.09 -24.58 -0.17 -1.16 16 9 C -0.12 -1.28 6.41 -24.89 -0.16 -1.44 16 10 C 0.12 1.78 3.26 -68.10 -0.22 1.56 16 11 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 12 C 0.50 10.27 6.20 -10.98 -0.07 10.20 16 13 O -0.52 -12.88 13.63 -8.38 -0.11 -13.00 16 14 N -0.71 -14.88 4.92 -54.93 -0.27 -15.15 16 15 C 0.25 6.32 2.21 -69.08 -0.15 6.17 16 16 H 0.08 2.35 7.58 -51.93 -0.39 1.96 16 17 C -0.55 -14.17 8.46 -34.44 -0.29 -14.46 16 18 H 0.08 1.86 7.74 -52.48 -0.41 1.45 16 19 C 0.06 1.68 5.20 -17.82 -0.09 1.59 16 20 N -0.84 -23.45 9.50 55.43 0.53 -22.92 16 21 Si 0.91 20.19 29.54 -169.99 -5.02 15.17 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 C 0.42 11.28 2.81 37.16 0.10 11.39 16 26 F -0.21 -5.49 16.94 2.25 0.04 -5.45 16 27 F -0.14 -4.02 12.91 2.25 0.03 -3.99 16 28 F -0.21 -5.96 15.68 2.25 0.04 -5.92 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 33 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.09 0.74 7.85 -51.93 -0.41 0.33 16 36 H 0.08 0.53 7.48 -51.93 -0.39 0.14 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.99 7.84 -51.93 -0.41 0.59 16 42 H 0.40 7.03 8.53 -40.82 -0.35 6.68 16 43 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 362.52 15.07 5.46 5.46 Total: -1.00 -35.42 362.52 -7.09 -42.51 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.13 Total: 4.33 kcal Atomic # 6 Polarization: 20.38 SS G_CDS: -1.05 Total: 19.33 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -0.21 Total: -47.20 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.24 Total: -24.23 kcal Atomic # 9 Polarization: -15.47 SS G_CDS: 0.10 Total: -15.37 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.42 -7.09 -42.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928811442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.360 kcal (2) G-P(sol) polarization free energy of solvation -35.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds