Wall clock time and date at job start Sat Apr 11 2020 04:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46949 * 2 1 4 4 C 1.50699 * 109.46793 * 179.97438 * 3 2 1 5 5 O 1.21277 * 120.00275 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99698 * 180.02562 * 4 3 2 7 7 C 1.47426 * 125.64848 * 359.96067 * 6 4 3 8 8 C 1.54916 * 104.83246 * 204.16368 * 7 6 4 9 9 C 1.55542 * 101.59531 * 322.95304 * 8 7 6 10 10 C 1.47019 * 125.65225 * 180.02562 * 6 4 3 11 11 H 1.08999 * 109.87969 * 298.48097 * 10 6 4 12 12 C 1.50702 * 109.87933 * 59.48562 * 10 6 4 13 13 O 1.21283 * 120.00262 * 359.69053 * 12 10 6 14 14 N 1.34777 * 119.99928 * 179.40959 * 12 10 6 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 10 16 16 H 1.09001 * 109.46948 * 35.00281 * 15 14 12 17 17 C 1.50700 * 109.47343 * 155.00212 * 15 14 12 18 18 H 1.07995 * 119.99741 * 0.02562 * 17 15 14 19 19 C 1.37875 * 119.99973 * 180.02562 * 17 15 14 20 20 N 1.31512 * 120.00332 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 119.99735 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46773 * 90.00331 * 21 19 17 23 23 H 1.48503 * 109.47086 * 209.99611 * 21 19 17 24 24 H 1.48499 * 109.47347 * 330.00078 * 21 19 17 25 25 C 1.52997 * 109.47288 * 275.00460 * 15 14 12 26 26 F 1.39903 * 109.47316 * 60.00008 * 25 15 14 27 27 F 1.39904 * 109.47242 * 179.97438 * 25 15 14 28 28 F 1.39901 * 109.47468 * 299.99513 * 25 15 14 29 29 H 1.09005 * 109.46996 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47242 * 299.99258 * 1 2 3 31 31 H 1.08996 * 109.47037 * 60.00557 * 1 2 3 32 32 H 1.08997 * 109.47290 * 240.00187 * 2 1 3 33 33 H 1.08999 * 109.47134 * 120.00392 * 2 1 3 34 34 H 1.09005 * 109.46375 * 60.00072 * 3 2 1 35 35 H 1.08990 * 109.47250 * 300.00121 * 3 2 1 36 36 H 1.09001 * 110.37090 * 323.00194 * 7 6 4 37 37 H 1.08995 * 110.36718 * 85.32392 * 7 6 4 38 38 H 1.09003 * 110.99890 * 81.06408 * 8 7 6 39 39 H 1.08999 * 111.00328 * 204.87804 * 8 7 6 40 40 H 1.08994 * 110.78353 * 277.24063 * 9 8 7 41 41 H 1.09002 * 110.83242 * 153.84580 * 9 8 7 42 42 H 0.97000 * 120.00317 * 0.28382 * 14 12 10 43 43 H 0.97002 * 120.00028 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1534 0.3922 0.0006 6 7 4.2208 2.6097 0.0013 7 6 3.6129 3.9528 0.0006 8 6 4.6947 4.8775 -0.6114 9 6 5.9982 4.2652 -0.0236 10 6 5.6839 2.7545 0.0014 11 1 6.1008 2.3042 0.9022 12 6 6.2647 2.0896 -1.2199 13 8 5.5340 1.5395 -2.0163 14 7 7.5959 2.1110 -1.4300 15 6 8.1600 1.4698 -2.6202 16 1 7.4719 1.5880 -3.4572 17 6 9.4795 2.1137 -2.9600 18 1 9.8599 2.9197 -2.3501 19 6 10.2009 1.6739 -4.0496 20 7 9.7374 0.6928 -4.7926 21 14 11.8361 2.4726 -4.4712 22 1 12.9320 1.7568 -3.7698 23 1 12.0579 2.4020 -5.9378 24 1 11.8183 3.8939 -4.0410 25 6 8.3756 -0.0194 -2.3436 26 9 7.1507 -0.6173 -2.0282 27 9 8.9138 -0.6319 -3.4804 28 9 9.2589 -0.1712 -1.2693 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6766 1.9562 0.8901 35 1 1.6767 1.9563 -0.8899 36 1 2.7136 3.9619 -0.6153 37 1 3.3796 4.2641 1.0187 38 1 4.6902 4.8169 -1.6997 39 1 4.5623 5.9070 -0.2788 40 1 6.1806 4.6382 0.9841 41 1 6.8498 4.4709 -0.6721 42 1 8.1804 2.5509 -0.7930 43 1 10.2451 0.3832 -5.5590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928811443.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:37:59 Heat of formation + Delta-G solvation = -213.607885 kcal Electronic energy + Delta-G solvation = -31436.302028 eV Core-core repulsion = 26681.010159 eV Total energy + Delta-G solvation = -4755.291869 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.23830 -45.88341 -45.52090 -40.43417 -38.44559 -37.00619 -34.59228 -34.29936 -32.63039 -31.62675 -30.00600 -28.15706 -27.53156 -24.53584 -23.96322 -22.29606 -21.83460 -21.04825 -19.80272 -19.01114 -17.67769 -17.03702 -16.79978 -16.62235 -16.48277 -15.86493 -15.57539 -15.49604 -14.97734 -14.78116 -14.15817 -13.88866 -13.71102 -13.33816 -13.21084 -13.15101 -12.80936 -12.73609 -12.62265 -12.37818 -12.27688 -12.20318 -11.95089 -11.89559 -11.75243 -11.72655 -11.46047 -11.34184 -11.13930 -11.13063 -11.10027 -10.87679 -10.75417 -10.67562 -10.38216 -9.62980 -9.54865 -9.34886 -8.70622 -8.40969 -8.18858 -6.21176 -4.45504 2.83223 3.05753 3.18911 3.24706 3.27412 3.27832 3.89556 4.22458 4.37347 4.42664 4.67474 4.80733 4.81754 4.86296 4.96533 4.98265 5.15147 5.18129 5.29414 5.39303 5.45777 5.53188 5.56194 5.62681 5.67626 5.71538 5.84182 5.92770 5.95690 5.96112 6.03864 6.13471 6.25525 6.30963 6.37001 6.98802 7.23543 7.49455 7.64353 7.65445 8.35464 8.45930 8.52985 8.97041 9.22367 10.70363 Molecular weight = 336.14amu Principal moments of inertia in cm(-1) A = 0.016654 B = 0.003854 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.889631 B = 7263.583874 C = 8326.768648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.130 4.130 4 C 0.530 3.470 5 O -0.513 6.513 6 N -0.607 5.607 7 C 0.102 3.898 8 C -0.133 4.133 9 C -0.125 4.125 10 C 0.118 3.882 11 H 0.096 0.904 12 C 0.500 3.500 13 O -0.515 6.515 14 N -0.713 5.713 15 C 0.248 3.752 16 H 0.082 0.918 17 C -0.552 4.552 18 H 0.077 0.923 19 C 0.064 3.936 20 N -0.839 5.839 21 Si 0.915 3.085 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.270 1.270 25 C 0.415 3.585 26 F -0.212 7.212 27 F -0.139 7.139 28 F -0.210 7.210 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.396 0.604 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.486 9.065 10.673 18.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.170 4.170 4 C 0.318 3.682 5 O -0.387 6.387 6 N -0.343 5.343 7 C -0.021 4.021 8 C -0.171 4.171 9 C -0.163 4.163 10 C 0.010 3.990 11 H 0.114 0.886 12 C 0.283 3.717 13 O -0.389 6.389 14 N -0.364 5.364 15 C 0.143 3.857 16 H 0.100 0.900 17 C -0.589 4.589 18 H 0.095 0.905 19 C -0.144 4.144 20 N -0.472 5.472 21 Si 0.741 3.259 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.195 1.195 25 C 0.359 3.641 26 F -0.194 7.194 27 F -0.120 7.120 28 F -0.192 7.192 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.112 0.888 42 H 0.230 0.770 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.728 7.810 9.894 17.913 hybrid contribution 1.281 0.249 0.092 1.308 sum -11.447 8.058 9.986 17.196 Atomic orbital electron populations 1.21781 0.95654 1.01830 1.01518 1.21297 0.94971 0.94843 1.03840 1.21644 0.91623 1.00004 1.03747 1.20336 0.89834 0.82171 0.75824 1.90771 1.70072 1.30276 1.47580 1.48255 1.05120 1.06025 1.74918 1.22312 0.97057 0.82069 1.00625 1.22865 0.93801 0.98807 1.01648 1.22759 0.99292 0.91436 1.02813 1.21485 0.82635 0.97021 0.97832 0.88631 1.20637 0.83010 0.80610 0.87437 1.90697 1.59273 1.42980 1.45960 1.46013 1.06354 1.57405 1.26594 1.19665 0.97437 0.83724 0.84920 0.90002 1.20866 1.03496 1.20785 1.13761 0.90502 1.25091 0.99020 0.94469 0.95856 1.70416 1.38174 1.23219 1.15394 0.86227 0.82370 0.79567 0.77728 1.20231 1.20838 1.19499 1.23093 0.72466 0.94388 0.74144 1.93117 1.45998 1.86941 1.93354 1.93393 1.85286 1.85228 1.48116 1.92980 1.70758 1.96911 1.58592 0.92485 0.92902 0.92737 0.90910 0.91336 0.89459 0.89155 0.90540 0.91235 0.90119 0.89512 0.89589 0.88830 0.77013 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.96 16 2 C -0.11 -1.34 5.22 -26.73 -0.14 -1.48 16 3 C -0.13 -1.49 4.71 -27.88 -0.13 -1.63 16 4 C 0.53 8.69 6.99 -10.99 -0.08 8.61 16 5 O -0.51 -11.10 15.05 -11.48 -0.17 -11.27 16 6 N -0.61 -8.66 2.88 -164.32 -0.47 -9.13 16 7 C 0.10 0.95 6.69 -2.52 -0.02 0.94 16 8 C -0.13 -1.21 7.10 -24.37 -0.17 -1.38 16 9 C -0.12 -1.30 6.46 -24.69 -0.16 -1.46 16 10 C 0.12 1.77 3.29 -68.11 -0.22 1.55 16 11 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 12 C 0.50 10.25 6.26 -10.98 -0.07 10.18 16 13 O -0.51 -12.80 13.42 -11.49 -0.15 -12.95 16 14 N -0.71 -14.87 4.66 -54.93 -0.26 -15.12 16 15 C 0.25 6.34 2.21 -69.08 -0.15 6.18 16 16 H 0.08 2.35 7.58 -51.93 -0.39 1.95 16 17 C -0.55 -14.16 8.46 -34.44 -0.29 -14.46 16 18 H 0.08 1.83 7.74 -52.49 -0.41 1.43 16 19 C 0.06 1.69 5.20 -17.82 -0.09 1.60 16 20 N -0.84 -23.44 9.51 55.43 0.53 -22.91 16 21 Si 0.91 20.16 29.54 -169.99 -5.02 15.14 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 C 0.42 11.27 2.81 37.16 0.10 11.37 16 26 F -0.21 -5.95 15.68 2.25 0.04 -5.92 16 27 F -0.14 -4.03 12.92 2.25 0.03 -4.00 16 28 F -0.21 -5.49 16.94 2.25 0.04 -5.45 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 33 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 0.93 7.85 -51.93 -0.41 0.52 16 36 H 0.08 0.62 7.48 -51.93 -0.39 0.23 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.09 1.04 7.43 -51.93 -0.39 0.65 16 42 H 0.40 7.00 8.36 -40.82 -0.34 6.66 16 43 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 361.41 15.07 5.45 5.45 Total: -1.00 -35.31 361.41 -7.16 -42.47 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.10 Total: 4.63 kcal Atomic # 6 Polarization: 20.13 SS G_CDS: -1.05 Total: 19.08 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: -0.20 Total: -47.17 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.33 Total: -24.22 kcal Atomic # 9 Polarization: -15.47 SS G_CDS: 0.10 Total: -15.37 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.31 -7.16 -42.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928811443.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.143 kcal (2) G-P(sol) polarization free energy of solvation -35.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds