Wall clock time and date at job start Sat Apr 11 2020 04:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.45029 * 2 1 4 4 C 1.53044 * 109.45694 * 240.03983 * 2 1 3 5 5 C 1.53195 * 109.31489 * 178.61458 * 4 2 1 6 6 N 1.46926 * 108.77321 * 54.63450 * 5 4 2 7 7 C 1.34779 * 120.62770 * 126.41687 * 6 5 4 8 8 O 1.21281 * 119.99600 * 180.02562 * 7 6 5 9 9 C 1.50697 * 120.00199 * 359.97438 * 7 6 5 10 10 C 1.52999 * 109.47517 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47517 * 179.97438 * 10 9 7 12 12 H 1.07997 * 119.99514 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99806 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00546 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99830 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46922 * 90.00290 * 15 13 11 17 17 H 1.48498 * 109.47472 * 210.00086 * 15 13 11 18 18 H 1.48497 * 109.47210 * 330.00555 * 15 13 11 19 19 C 1.46922 * 118.74050 * 306.39286 * 6 5 4 20 20 C 1.53035 * 109.46326 * 119.97668 * 2 1 3 21 21 H 1.09001 * 109.49893 * 301.36470 * 20 2 1 22 22 N 1.46496 * 109.50275 * 61.42895 * 20 2 1 23 23 C 1.34777 * 120.00258 * 205.00568 * 22 20 2 24 24 O 1.21279 * 120.00166 * 359.97438 * 23 22 20 25 25 C 1.50706 * 119.99762 * 179.97438 * 23 22 20 26 26 F 1.39900 * 109.46715 * 179.97438 * 25 23 22 27 27 F 1.39897 * 109.47068 * 299.99527 * 25 23 22 28 28 F 1.39895 * 109.47042 * 59.99836 * 25 23 22 29 29 H 1.09005 * 109.47138 * 300.02647 * 1 2 3 30 30 H 1.08995 * 109.47564 * 60.02492 * 1 2 3 31 31 H 1.08995 * 109.47415 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.49998 * 298.56993 * 4 2 1 33 33 H 1.09008 * 109.49663 * 58.66134 * 4 2 1 34 34 H 1.08997 * 109.58543 * 174.42682 * 5 4 2 35 35 H 1.08997 * 109.58471 * 294.84505 * 5 4 2 36 36 H 1.09007 * 109.46813 * 300.00052 * 9 7 6 37 37 H 1.09000 * 109.47127 * 59.99946 * 9 7 6 38 38 H 1.09001 * 109.46472 * 299.99941 * 10 9 7 39 39 H 1.09002 * 109.46748 * 59.99690 * 10 9 7 40 40 H 0.96998 * 120.00621 * 179.97438 * 14 13 11 41 41 H 1.09003 * 109.58775 * 293.82089 * 19 6 5 42 42 H 1.08997 * 109.58714 * 173.40062 * 19 6 5 43 43 H 0.96999 * 119.99694 * 24.99958 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 6 2.0397 -0.7206 -1.2502 5 6 3.5713 -0.6885 -1.2645 6 7 4.0678 -1.2489 -0.0003 7 6 4.9620 -2.2574 -0.0005 8 8 5.3638 -2.7116 1.0498 9 6 5.4616 -2.8212 -1.3057 10 6 6.4592 -3.9471 -1.0264 11 6 6.9584 -4.5113 -2.3315 12 1 6.5996 -4.1075 -3.2667 13 6 7.8730 -5.5429 -2.3317 14 7 8.3096 -6.0350 -1.1929 15 14 8.4913 -6.2428 -3.9495 16 1 9.7027 -5.4995 -4.3797 17 1 8.8284 -7.6780 -3.7714 18 1 7.4342 -6.1073 -4.9836 19 6 3.5714 -0.6888 1.2640 20 6 2.0398 -0.7209 1.2499 21 1 1.6568 -0.2214 2.1398 22 7 1.5801 -2.1118 1.2340 23 6 1.4516 -2.7924 2.3902 24 8 1.7169 -2.2535 3.4438 25 6 0.9781 -4.2230 2.3738 26 9 0.9261 -4.7120 3.6835 27 9 -0.2968 -4.2857 1.8012 28 9 1.8659 -4.9994 1.6214 29 1 -0.3634 0.5143 0.8898 30 1 -0.3634 0.5134 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.6976 -1.7555 -1.2386 33 1 1.6570 -0.2205 -2.1399 34 1 3.9414 -1.2843 -2.0988 35 1 3.9142 0.3409 -1.3676 36 1 4.6208 -3.2147 -1.8770 37 1 5.9527 -2.0337 -1.8774 38 1 7.3000 -3.5539 -0.4548 39 1 5.9678 -4.7344 -0.4548 40 1 8.9528 -6.7610 -1.1929 41 1 3.9144 0.3407 1.3672 42 1 3.9418 -1.2848 2.0981 43 1 1.3682 -2.5429 0.3913 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856415379.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:38:28 Heat of formation + Delta-G solvation = -231.472614 kcal Electronic energy + Delta-G solvation = -30978.355342 eV Core-core repulsion = 26222.288800 eV Total energy + Delta-G solvation = -4756.066542 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.145 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -50.46312 -48.00969 -47.92045 -40.96514 -39.42242 -37.84673 -34.76494 -33.57524 -33.45262 -31.44718 -30.52214 -28.65604 -27.66145 -25.70349 -23.62070 -23.59743 -22.02586 -21.60554 -20.19877 -19.62136 -18.90803 -18.76607 -18.39895 -17.08153 -16.48061 -16.06723 -15.87639 -15.81331 -15.32305 -14.94580 -14.77443 -14.60634 -14.46965 -14.42884 -14.34526 -14.05966 -14.03974 -14.00908 -13.75776 -13.56015 -13.33199 -13.03545 -12.76322 -12.32102 -12.24990 -12.07856 -11.97495 -11.35883 -11.19370 -11.08161 -10.94761 -10.80631 -10.61161 -10.58588 -9.99382 -9.81848 -9.63616 -9.20742 -9.02452 -8.49704 -8.32864 -5.96946 -4.01883 1.54784 1.68615 2.86920 3.13546 3.16233 3.32142 3.38569 3.40651 3.44995 3.85790 3.96295 4.15145 4.31442 4.38746 4.45763 4.68523 4.96073 5.00760 5.11506 5.14553 5.23407 5.33550 5.37990 5.39765 5.52177 5.57693 5.59704 5.75169 5.77754 5.89560 5.92145 6.13893 6.15922 6.57373 6.69003 6.85077 7.27776 7.65200 7.72567 7.83905 8.05562 8.36194 8.68239 9.06425 9.61872 11.13926 Molecular weight = 336.14amu Principal moments of inertia in cm(-1) A = 0.011840 B = 0.003669 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.302760 B = 7629.661146 C = 8892.339523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 H 0.094 0.906 4 C -0.134 4.134 5 C 0.106 3.894 6 N -0.626 5.626 7 C 0.511 3.489 8 O -0.527 6.527 9 C -0.127 4.127 10 C 0.037 3.963 11 C -0.527 4.527 12 H 0.055 0.945 13 C 0.059 3.941 14 N -0.888 5.888 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.097 3.903 20 C 0.135 3.865 21 H 0.105 0.895 22 N -0.687 5.687 23 C 0.488 3.512 24 O -0.478 6.478 25 C 0.448 3.552 26 F -0.154 7.154 27 F -0.172 7.172 28 F -0.158 7.158 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.261 0.739 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.101 13.945 1.358 24.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 H 0.113 0.887 4 C -0.173 4.173 5 C -0.017 4.017 6 N -0.363 5.363 7 C 0.302 3.698 8 O -0.402 6.402 9 C -0.167 4.167 10 C -0.001 4.001 11 C -0.566 4.566 12 H 0.073 0.927 13 C -0.143 4.143 14 N -0.527 5.527 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.027 4.027 20 C 0.031 3.969 21 H 0.123 0.877 22 N -0.341 5.341 23 C 0.266 3.734 24 O -0.350 6.350 25 C 0.390 3.610 26 F -0.135 7.135 27 F -0.153 7.153 28 F -0.140 7.140 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.041 0.959 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.095 0.905 42 H 0.117 0.883 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -19.546 13.912 2.781 24.152 hybrid contribution 0.159 -0.931 -1.310 1.615 sum -19.387 12.980 1.471 23.378 Atomic orbital electron populations 1.21849 0.94176 1.02278 1.02298 1.21439 0.96485 1.00211 0.93606 0.88748 1.22053 0.96118 1.01123 0.97996 1.21733 0.93164 0.99741 0.87088 1.48296 1.45122 1.36975 1.05868 1.21639 0.77253 0.77745 0.93181 1.90687 1.56518 1.58755 1.34201 1.21880 1.01293 1.01106 0.92408 1.18905 0.92941 0.91378 0.96830 1.21185 1.25094 1.17887 0.92417 0.92660 1.25016 0.96422 0.96710 0.96144 1.69992 1.31300 1.26284 1.25112 0.86605 0.79143 0.78345 0.83929 1.20681 1.21213 1.19897 1.21911 0.91804 1.00024 0.88998 1.21655 0.94913 0.80122 1.00198 0.87673 1.45885 1.65673 1.14281 1.08215 1.20207 0.80664 0.86432 0.86088 1.90862 1.47254 1.66841 1.30026 1.20273 0.76172 0.89334 0.75185 1.93265 1.95988 1.88712 1.35540 1.93244 1.40495 1.96907 1.84667 1.93350 1.67739 1.76949 1.75912 0.92285 0.91931 0.92540 0.91592 0.89769 0.88595 0.91323 0.90351 0.90272 0.95885 0.95849 0.92917 0.90467 0.88272 0.75368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.05 37.15 0.34 -0.43 16 2 C -0.10 -0.58 2.48 -90.58 -0.22 -0.81 16 3 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.13 -0.85 5.20 -26.61 -0.14 -0.99 16 5 C 0.11 0.94 6.34 -3.71 -0.02 0.92 16 6 N -0.63 -8.13 2.89 -172.77 -0.50 -8.63 16 7 C 0.51 9.52 7.70 -10.99 -0.08 9.44 16 8 O -0.53 -12.35 15.40 5.56 0.09 -12.26 16 9 C -0.13 -2.48 3.99 -27.88 -0.11 -2.59 16 10 C 0.04 0.98 4.26 -27.88 -0.12 0.87 16 11 C -0.53 -14.74 9.11 -34.44 -0.31 -15.06 16 12 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 15 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 C 0.10 1.13 6.03 -3.71 -0.02 1.11 16 20 C 0.14 1.20 2.24 -67.81 -0.15 1.05 16 21 H 0.11 0.91 7.58 -51.93 -0.39 0.52 16 22 N -0.69 -7.00 4.25 -53.69 -0.23 -7.23 16 23 C 0.49 6.27 7.32 -10.98 -0.08 6.19 16 24 O -0.48 -7.36 16.28 5.56 0.09 -7.27 16 25 C 0.45 5.67 3.43 36.01 0.12 5.80 16 26 F -0.15 -2.13 16.92 2.25 0.04 -2.09 16 27 F -0.17 -1.83 17.30 2.25 0.04 -1.79 16 28 F -0.16 -2.29 17.30 2.25 0.04 -2.25 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.32 7.54 -51.93 -0.39 -0.07 16 32 H 0.07 0.45 6.40 -51.93 -0.33 0.12 16 33 H 0.08 0.39 8.14 -51.92 -0.42 -0.04 16 34 H 0.10 0.90 5.93 -51.93 -0.31 0.59 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 1.38 7.69 -51.93 -0.40 0.98 16 37 H 0.08 1.41 7.94 -51.93 -0.41 1.00 16 38 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 39 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.10 1.55 7.00 -51.93 -0.36 1.19 16 43 H 0.41 3.62 6.64 -40.82 -0.27 3.35 16 LS Contribution 364.92 15.07 5.50 5.50 Total: -1.00 -35.31 364.92 -5.92 -41.23 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -5.79 Total: -2.12 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -0.91 Total: 7.09 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: 0.01 Total: -42.48 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: 0.18 Total: -19.53 kcal Atomic # 9 Polarization: -6.25 SS G_CDS: 0.12 Total: -6.14 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.31 -5.92 -41.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856415379.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.247 kcal (2) G-P(sol) polarization free energy of solvation -35.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds