Wall clock time and date at job start Sat Apr 11 2020 04:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.45029 * 2 1 4 4 C 1.53044 * 109.45694 * 240.03983 * 2 1 3 5 5 C 1.53195 * 109.31489 * 178.61458 * 4 2 1 6 6 N 1.46926 * 108.77321 * 54.63450 * 5 4 2 7 7 C 1.34779 * 120.62770 * 126.41687 * 6 5 4 8 8 O 1.21281 * 119.99600 * 180.02562 * 7 6 5 9 9 C 1.50697 * 120.00199 * 359.97438 * 7 6 5 10 10 C 1.52999 * 109.47517 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47517 * 179.97438 * 10 9 7 12 12 H 1.07997 * 119.99514 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99806 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00546 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99830 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46922 * 90.00290 * 15 13 11 17 17 H 1.48498 * 109.47472 * 210.00086 * 15 13 11 18 18 H 1.48497 * 109.47210 * 330.00555 * 15 13 11 19 19 C 1.46922 * 118.74050 * 306.39286 * 6 5 4 20 20 C 1.53035 * 109.46326 * 119.97668 * 2 1 3 21 21 H 1.09001 * 109.49893 * 301.36470 * 20 2 1 22 22 N 1.46496 * 109.50275 * 61.42895 * 20 2 1 23 23 C 1.34777 * 120.00258 * 205.00568 * 22 20 2 24 24 O 1.21279 * 120.00166 * 359.97438 * 23 22 20 25 25 C 1.50706 * 119.99762 * 179.97438 * 23 22 20 26 26 F 1.39900 * 109.46715 * 179.97438 * 25 23 22 27 27 F 1.39897 * 109.47068 * 299.99527 * 25 23 22 28 28 F 1.39895 * 109.47042 * 59.99836 * 25 23 22 29 29 H 1.09005 * 109.47138 * 300.02647 * 1 2 3 30 30 H 1.08995 * 109.47564 * 60.02492 * 1 2 3 31 31 H 1.08995 * 109.47415 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.49998 * 298.56993 * 4 2 1 33 33 H 1.09008 * 109.49663 * 58.66134 * 4 2 1 34 34 H 1.08997 * 109.58543 * 174.42682 * 5 4 2 35 35 H 1.08997 * 109.58471 * 294.84505 * 5 4 2 36 36 H 1.09007 * 109.46813 * 300.00052 * 9 7 6 37 37 H 1.09000 * 109.47127 * 59.99946 * 9 7 6 38 38 H 1.09001 * 109.46472 * 299.99941 * 10 9 7 39 39 H 1.09002 * 109.46748 * 59.99690 * 10 9 7 40 40 H 0.96998 * 120.00621 * 179.97438 * 14 13 11 41 41 H 1.09003 * 109.58775 * 293.82089 * 19 6 5 42 42 H 1.08997 * 109.58714 * 173.40062 * 19 6 5 43 43 H 0.96999 * 119.99694 * 24.99958 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 6 2.0397 -0.7206 -1.2502 5 6 3.5713 -0.6885 -1.2645 6 7 4.0678 -1.2489 -0.0003 7 6 4.9620 -2.2574 -0.0005 8 8 5.3638 -2.7116 1.0498 9 6 5.4616 -2.8212 -1.3057 10 6 6.4592 -3.9471 -1.0264 11 6 6.9584 -4.5113 -2.3315 12 1 6.5996 -4.1075 -3.2667 13 6 7.8730 -5.5429 -2.3317 14 7 8.3096 -6.0350 -1.1929 15 14 8.4913 -6.2428 -3.9495 16 1 9.7027 -5.4995 -4.3797 17 1 8.8284 -7.6780 -3.7714 18 1 7.4342 -6.1073 -4.9836 19 6 3.5714 -0.6888 1.2640 20 6 2.0398 -0.7209 1.2499 21 1 1.6568 -0.2214 2.1398 22 7 1.5801 -2.1118 1.2340 23 6 1.4516 -2.7924 2.3902 24 8 1.7169 -2.2535 3.4438 25 6 0.9781 -4.2230 2.3738 26 9 0.9261 -4.7120 3.6835 27 9 -0.2968 -4.2857 1.8012 28 9 1.8659 -4.9994 1.6214 29 1 -0.3634 0.5143 0.8898 30 1 -0.3634 0.5134 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.6976 -1.7555 -1.2386 33 1 1.6570 -0.2205 -2.1399 34 1 3.9414 -1.2843 -2.0988 35 1 3.9142 0.3409 -1.3676 36 1 4.6208 -3.2147 -1.8770 37 1 5.9527 -2.0337 -1.8774 38 1 7.3000 -3.5539 -0.4548 39 1 5.9678 -4.7344 -0.4548 40 1 8.9528 -6.7610 -1.1929 41 1 3.9144 0.3407 1.3672 42 1 3.9418 -1.2848 2.0981 43 1 1.3682 -2.5429 0.3913 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000856415379.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:38:26 Heat of formation + Delta-G solvation = -256.169569 kcal Electronic energy + Delta-G solvation = -30979.426282 eV Core-core repulsion = 26222.288800 eV Total energy + Delta-G solvation = -4757.137483 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -51.52585 -49.04443 -49.02235 -41.93233 -40.65892 -38.95232 -35.84438 -35.58982 -34.30767 -33.12668 -31.66604 -29.46425 -28.82728 -27.43201 -24.78172 -24.32978 -23.33404 -22.82551 -21.27076 -20.55391 -19.96037 -19.91324 -19.50280 -18.80211 -17.69447 -17.37485 -17.05496 -16.87599 -16.54964 -16.40740 -16.02737 -15.78589 -15.70351 -15.41471 -15.21577 -15.13914 -15.11798 -14.97595 -14.71837 -14.64885 -14.43194 -14.21153 -13.96252 -13.86907 -13.48689 -13.18342 -12.84596 -12.81398 -12.58238 -12.44683 -11.94924 -11.93158 -11.81287 -11.66097 -11.54295 -11.36092 -11.29403 -10.81734 -10.58699 -10.56594 -9.56731 -8.17175 -6.31715 0.50273 0.69656 1.42594 1.45457 1.56236 1.69825 1.86717 2.03279 2.43658 2.44911 2.87109 2.91912 3.16140 3.51766 3.62811 3.80146 3.90213 4.01908 4.30329 4.39708 4.45836 4.48907 4.51649 4.55470 4.73869 4.77729 4.85437 4.88604 4.96125 5.10211 5.11090 5.18821 5.34372 5.47130 5.48849 5.61099 5.62141 5.76309 5.85469 6.17327 6.35672 6.41162 6.87320 7.28673 7.39179 8.95602 Molecular weight = 336.14amu Principal moments of inertia in cm(-1) A = 0.011840 B = 0.003669 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.302760 B = 7629.661146 C = 8892.339523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 H 0.119 0.881 4 C -0.130 4.130 5 C 0.095 3.905 6 N -0.609 5.609 7 C 0.508 3.492 8 O -0.592 6.592 9 C -0.113 4.113 10 C 0.043 3.957 11 C -0.540 4.540 12 H 0.079 0.921 13 C -0.007 4.007 14 N -0.940 5.940 15 Si 0.973 3.027 16 H -0.272 1.272 17 H -0.289 1.289 18 H -0.252 1.252 19 C 0.094 3.906 20 C 0.136 3.864 21 H 0.111 0.889 22 N -0.675 5.675 23 C 0.486 3.514 24 O -0.510 6.510 25 C 0.451 3.549 26 F -0.163 7.163 27 F -0.156 7.156 28 F -0.171 7.171 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.104 0.896 38 H -0.023 1.023 39 H -0.023 1.023 40 H 0.262 0.738 41 H 0.106 0.894 42 H 0.053 0.947 43 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.076 16.292 -2.085 27.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 H 0.137 0.863 4 C -0.168 4.168 5 C -0.026 4.026 6 N -0.343 5.343 7 C 0.298 3.702 8 O -0.472 6.472 9 C -0.153 4.153 10 C 0.005 3.995 11 C -0.577 4.577 12 H 0.097 0.903 13 C -0.205 4.205 14 N -0.580 5.580 15 Si 0.797 3.203 16 H -0.197 1.197 17 H -0.215 1.215 18 H -0.176 1.176 19 C -0.029 4.029 20 C 0.033 3.967 21 H 0.129 0.871 22 N -0.327 5.327 23 C 0.264 3.736 24 O -0.384 6.384 25 C 0.393 3.607 26 F -0.144 7.144 27 F -0.138 7.138 28 F -0.153 7.153 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.135 0.865 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.122 0.878 38 H -0.004 1.004 39 H -0.004 1.004 40 H 0.070 0.930 41 H 0.124 0.876 42 H 0.071 0.929 43 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -21.587 16.327 -0.737 27.076 hybrid contribution 0.733 -1.592 -0.219 1.766 sum -20.855 14.734 -0.956 25.553 Atomic orbital electron populations 1.21827 0.93122 1.02152 1.03217 1.21455 0.97155 1.00710 0.91278 0.86342 1.22074 0.93817 1.01404 0.99500 1.22168 0.95126 1.00870 0.84478 1.48212 1.42962 1.34846 1.08287 1.21436 0.78132 0.78829 0.91766 1.90672 1.59290 1.61346 1.35883 1.21618 1.00546 0.99459 0.93643 1.18682 0.92853 0.92443 0.95499 1.21697 1.24818 1.17794 0.93430 0.90294 1.26150 0.96720 0.97264 1.00343 1.70189 1.32322 1.27140 1.28323 0.85327 0.79060 0.77008 0.78886 1.19721 1.21470 1.17559 1.22034 0.93821 1.00340 0.86755 1.21838 0.92683 0.79554 1.02651 0.87133 1.45962 1.64223 1.14836 1.07716 1.20270 0.80539 0.86377 0.86437 1.90843 1.48930 1.67482 1.31182 1.20266 0.76517 0.89166 0.74737 1.93242 1.96056 1.88869 1.36234 1.93269 1.39320 1.96839 1.84333 1.93325 1.68397 1.77342 1.76212 0.92291 0.90146 0.93234 0.92198 0.86452 0.88657 0.88487 0.87726 0.87758 1.00436 1.00427 0.92961 0.87596 0.92857 0.74426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.05 71.98 0.65 -0.24 16 2 C -0.09 -0.66 2.48 -10.77 -0.03 -0.69 16 3 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 4 C -0.13 -1.04 5.20 30.67 0.16 -0.88 16 5 C 0.09 1.30 6.34 86.36 0.55 1.85 16 6 N -0.61 -15.01 2.89 -818.91 -2.37 -17.38 16 7 C 0.51 19.33 7.70 87.66 0.67 20.01 16 8 O -0.59 -29.74 15.40 -3.03 -0.05 -29.79 16 9 C -0.11 -4.40 3.99 29.85 0.12 -4.28 16 10 C 0.04 2.39 4.26 29.85 0.13 2.52 16 11 C -0.54 -30.36 9.11 25.60 0.23 -30.13 16 12 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 13 C -0.01 -0.44 5.46 84.65 0.46 0.03 16 14 N -0.94 -60.20 13.29 21.44 0.28 -59.91 16 15 Si 0.97 43.97 29.54 68.60 2.03 45.99 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 18 H -0.25 -10.41 7.11 99.48 0.71 -9.70 16 19 C 0.09 2.13 6.03 86.36 0.52 2.65 16 20 C 0.14 2.16 2.24 45.07 0.10 2.26 16 21 H 0.11 1.73 7.58 -2.39 -0.02 1.71 16 22 N -0.67 -13.22 4.25 -442.17 -1.88 -15.10 16 23 C 0.49 12.74 7.32 87.66 0.64 13.38 16 24 O -0.51 -16.31 16.28 -3.03 -0.05 -16.36 16 25 C 0.45 11.71 3.43 71.24 0.24 11.95 16 26 F -0.16 -4.69 16.92 44.97 0.76 -3.93 16 27 F -0.16 -3.25 17.30 44.97 0.78 -2.48 16 28 F -0.17 -5.17 17.30 44.97 0.78 -4.39 16 29 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 30 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.05 0.39 7.54 -2.39 -0.02 0.37 16 32 H 0.06 0.59 6.40 -2.38 -0.02 0.58 16 33 H 0.12 0.33 8.14 -2.38 -0.02 0.31 16 34 H 0.10 1.39 5.93 -2.39 -0.01 1.37 16 35 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.10 3.49 7.69 -2.38 -0.02 3.47 16 37 H 0.10 3.51 7.94 -2.39 -0.02 3.49 16 38 H -0.02 -1.46 8.10 -2.39 -0.02 -1.48 16 39 H -0.02 -1.45 8.10 -2.39 -0.02 -1.47 16 40 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 41 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.05 1.76 7.00 -2.39 -0.02 1.74 16 43 H 0.42 6.79 6.64 -92.71 -0.62 6.17 16 Total: -1.00 -84.30 364.92 5.18 -79.12 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 0.44 Total: 5.79 kcal Atomic # 6 Polarization: 13.98 SS G_CDS: 4.46 Total: 18.43 kcal Atomic # 7 Polarization: -88.43 SS G_CDS: -3.96 Total: -92.39 kcal Atomic # 8 Polarization: -46.05 SS G_CDS: -0.10 Total: -46.15 kcal Atomic # 9 Polarization: -13.11 SS G_CDS: 2.32 Total: -10.79 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -84.30 5.18 -79.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856415379.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.051 kcal (2) G-P(sol) polarization free energy of solvation -84.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -261.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -256.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds