Wall clock time and date at job start Sat Apr 11 2020 04:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.47224 * 2 1 4 4 C 1.46499 * 119.99550 * 275.00061 * 3 2 1 5 5 C 1.50702 * 109.46889 * 274.99571 * 4 3 2 6 6 H 1.08001 * 120.00109 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00113 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00012 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00185 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47038 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47276 * 119.99763 * 9 7 5 12 12 H 1.48504 * 109.47071 * 239.99947 * 9 7 5 13 13 S 1.65604 * 120.00242 * 94.99395 * 3 2 1 14 14 O 1.42102 * 106.40046 * 336.46226 * 13 3 2 15 15 O 1.42095 * 106.40157 * 203.54091 * 13 3 2 16 16 N 1.65603 * 107.21581 * 90.00176 * 13 3 2 17 17 C 1.46499 * 119.99763 * 96.55934 * 16 13 3 18 18 C 1.52997 * 109.47365 * 74.83514 * 17 16 13 19 19 C 1.53178 * 109.54392 * 63.90562 * 18 17 16 20 20 C 1.53089 * 109.16304 * 176.84777 * 19 18 17 21 21 O 1.42906 * 109.41618 * 302.39432 * 20 19 18 22 22 C 1.42899 * 114.09906 * 61.15646 * 21 20 19 23 23 C 1.53089 * 109.41642 * 298.84487 * 22 21 20 24 24 O 1.41591 * 119.99846 * 276.55500 * 16 13 3 25 25 C 1.42898 * 114.00160 * 265.15972 * 24 16 13 26 26 H 1.09001 * 109.46731 * 60.00599 * 1 2 3 27 27 H 1.08999 * 109.47132 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47417 * 300.00341 * 1 2 3 29 29 H 1.09000 * 109.47417 * 239.99659 * 2 1 3 30 30 H 1.09001 * 109.47238 * 119.99259 * 2 1 3 31 31 H 1.08992 * 109.47492 * 34.99645 * 4 3 2 32 32 H 1.08999 * 109.46874 * 155.00010 * 4 3 2 33 33 H 0.97004 * 120.00046 * 180.02562 * 8 7 5 34 34 H 1.09008 * 109.46954 * 314.83343 * 17 16 13 35 35 H 1.08999 * 109.47263 * 194.83655 * 17 16 13 36 36 H 1.09006 * 109.61498 * 303.68663 * 18 17 16 37 37 H 1.09002 * 109.52201 * 296.75296 * 19 18 17 38 38 H 1.09003 * 109.51934 * 56.94129 * 19 18 17 39 39 H 1.08994 * 109.47940 * 182.40901 * 20 19 18 40 40 H 1.09005 * 109.48170 * 62.37485 * 20 19 18 41 41 H 1.09001 * 109.47870 * 178.86108 * 22 21 20 42 42 H 1.09001 * 109.48710 * 58.82970 * 22 21 20 43 43 H 1.09004 * 109.52125 * 297.70368 * 23 22 21 44 44 H 1.08997 * 109.52895 * 177.51622 * 23 22 21 45 45 H 1.09005 * 109.47325 * 288.05687 * 25 24 16 46 46 H 1.09000 * 109.47211 * 48.06102 * 25 24 16 47 47 H 1.09001 * 109.47116 * 168.05614 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1582 2.1086 -1.2639 5 6 3.4948 1.7887 -1.8823 6 1 4.1724 1.1117 -1.3835 7 6 3.8530 2.3612 -3.0843 8 7 3.0280 3.1860 -3.6916 9 14 5.5094 1.9641 -3.8512 10 1 6.2454 1.0163 -2.9764 11 1 5.3019 1.3473 -5.1859 12 1 6.2981 3.2135 -4.0004 13 16 2.4121 2.1204 1.4287 14 8 1.6867 1.4417 2.4448 15 8 2.3056 3.5187 1.1997 16 7 4.0143 1.8138 1.7138 17 6 5.0277 2.8017 1.3352 18 6 4.9999 3.9666 2.3267 19 6 5.3921 3.4636 3.7194 20 6 5.4381 4.6488 4.6872 21 8 6.3624 5.6241 4.2005 22 6 6.0210 6.1648 2.9226 23 6 5.9984 5.0405 1.8838 24 8 4.4047 0.5970 2.3236 25 6 4.5680 0.6832 3.7406 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.3618 1.8096 -1.9453 32 1 2.0922 3.1802 -1.0757 33 1 3.2799 3.5885 -4.5375 34 1 4.8164 3.1730 0.3324 35 1 6.0129 2.3356 1.3499 36 1 3.9974 4.3932 2.3621 37 1 4.6553 2.7388 4.0658 38 1 6.3741 2.9926 3.6733 39 1 5.7583 4.3033 5.6701 40 1 4.4462 5.0944 4.7637 41 1 6.7611 6.9113 2.6343 42 1 5.0368 6.6303 2.9759 43 1 6.9926 4.6013 1.8007 44 1 5.6953 5.4433 0.9174 45 1 5.4688 1.2531 3.9686 46 1 3.7024 1.1820 4.1764 47 1 4.6574 -0.3199 4.1577 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800981209.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:37:31 Heat of formation + Delta-G solvation = -115.755955 kcal Electronic energy + Delta-G solvation = -30428.033126 eV Core-core repulsion = 26354.285126 eV Total energy + Delta-G solvation = -4073.748000 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.54411 -37.57970 -36.90863 -36.06291 -35.41800 -34.70215 -32.74461 -31.73946 -31.16631 -29.96774 -27.14372 -26.62199 -25.91913 -23.46416 -23.15946 -22.63575 -21.72682 -20.34243 -18.83994 -17.58076 -17.06264 -16.75405 -16.31207 -16.13520 -15.93006 -15.51123 -15.16268 -14.84795 -14.53164 -14.49231 -14.22549 -13.93502 -13.68955 -13.34404 -12.99763 -12.87552 -12.55796 -12.27508 -12.12598 -12.05497 -11.93515 -11.77499 -11.68206 -11.48544 -11.35979 -11.19744 -11.10974 -10.95903 -10.85695 -10.53774 -10.43734 -10.41899 -10.28707 -10.11607 -9.89403 -9.78103 -9.66145 -8.96015 -8.53306 -8.10742 -6.14520 -4.21051 0.87751 2.76626 3.21920 3.31046 3.34778 3.78132 3.84990 4.22535 4.34113 4.72034 4.76627 4.86449 4.98770 5.04131 5.18891 5.19843 5.31619 5.35483 5.39866 5.43169 5.45743 5.59951 5.64899 5.67385 5.74728 5.79399 5.80029 5.82696 5.86281 5.99405 6.07676 6.10320 6.18411 6.31837 6.31971 6.45548 6.64416 6.68803 7.13431 7.15678 7.31757 7.42132 7.60048 7.83342 8.11854 8.85921 9.45556 10.93370 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.010304 B = 0.005754 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.625332 B = 4864.667391 C = 6425.159187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.129 3.871 3 N -0.979 5.979 4 C 0.242 3.758 5 C -0.540 4.540 6 H 0.066 0.934 7 C 0.065 3.935 8 N -0.889 5.889 9 Si 0.891 3.109 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.283 1.283 13 S 2.786 3.214 14 O -0.988 6.988 15 O -0.960 6.960 16 N -0.865 5.865 17 C 0.120 3.880 18 C -0.126 4.126 19 C -0.167 4.167 20 C 0.060 3.940 21 O -0.387 6.387 22 C 0.061 3.939 23 C -0.146 4.146 24 O -0.123 6.123 25 C -0.020 4.020 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.051 0.949 33 H 0.264 0.736 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.050 0.950 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.494 -0.976 13.039 13.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.002 3.998 3 N -0.822 5.822 4 C 0.120 3.880 5 C -0.579 4.579 6 H 0.084 0.916 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.719 3.281 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.209 1.209 13 S 2.794 3.206 14 O -0.972 6.972 15 O -0.944 6.944 16 N -0.740 5.740 17 C -0.005 4.005 18 C -0.146 4.146 19 C -0.204 4.204 20 C -0.016 4.016 21 O -0.305 6.305 22 C -0.015 4.015 23 C -0.184 4.184 24 O -0.130 6.130 25 C -0.118 4.118 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.125 0.875 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.068 0.932 41 H 0.112 0.888 42 H 0.070 0.930 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.116 -0.498 13.417 13.783 hybrid contribution 1.034 -0.523 -0.784 1.399 sum 4.150 -1.021 12.633 13.336 Atomic orbital electron populations 1.22212 0.96834 1.01523 1.02322 1.21026 0.93518 0.82650 1.02572 1.57704 1.77213 1.23258 1.24025 1.19271 0.97621 0.92156 0.78964 1.21629 1.02159 1.28019 1.06121 0.91599 1.24947 0.97227 0.94800 0.96827 1.69947 1.35896 1.29871 1.17048 0.86552 0.83947 0.78317 0.79321 1.19555 1.20929 1.20852 1.02097 0.71779 0.73435 0.73252 1.93527 1.69749 1.76318 1.57629 1.93607 1.84632 1.29980 1.86191 1.61032 1.24369 1.18927 1.69635 1.21717 0.93512 0.86513 0.98754 1.21936 1.01353 0.96444 0.94898 1.22781 1.02690 0.98934 0.96008 1.22584 0.93263 0.88804 0.96996 1.87886 1.50201 1.57408 1.35045 1.22593 1.00889 0.95173 0.82893 1.22124 0.99798 0.96499 0.99994 1.90552 1.90723 1.12224 1.19502 1.23756 1.01239 1.03490 0.83320 0.92036 0.92172 0.92731 0.90047 0.91525 0.94092 0.93122 0.92633 0.87484 0.89438 0.88945 0.90112 0.90785 0.89124 0.93207 0.88836 0.92959 0.90917 0.89773 0.92159 0.92335 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 10.24 37.16 0.38 -2.33 16 2 C 0.13 2.31 6.06 -4.04 -0.02 2.28 16 3 N -0.98 -20.33 2.83 -115.66 -0.33 -20.66 16 4 C 0.24 5.86 5.44 -5.19 -0.03 5.84 16 5 C -0.54 -13.81 9.38 -34.44 -0.32 -14.14 16 6 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -24.76 13.29 55.43 0.74 -24.02 16 9 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 S 2.79 55.59 6.16 -107.50 -0.66 54.93 16 14 O -0.99 -20.13 16.66 -61.84 -1.03 -21.16 16 15 O -0.96 -20.91 14.07 -57.17 -0.80 -21.72 16 16 N -0.86 -15.20 3.12 -10.61 -0.03 -15.23 16 17 C 0.12 1.97 5.07 -4.04 -0.02 1.95 16 18 C -0.13 -1.84 2.31 -90.44 -0.21 -2.05 16 19 C -0.17 -2.06 3.80 -26.59 -0.10 -2.16 16 20 C 0.06 0.70 6.84 37.20 0.25 0.95 16 21 O -0.39 -5.02 10.77 -35.23 -0.38 -5.40 16 22 C 0.06 0.73 6.84 37.20 0.25 0.98 16 23 C -0.15 -1.88 5.42 -26.59 -0.14 -2.02 16 24 O -0.12 -1.99 11.38 -18.86 -0.21 -2.20 16 25 C -0.02 -0.24 9.58 101.05 0.97 0.73 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.45 8.11 -51.93 -0.42 1.03 16 30 H 0.07 1.11 7.61 -51.93 -0.40 0.72 16 31 H 0.04 1.03 8.11 -51.93 -0.42 0.61 16 32 H 0.05 1.33 6.91 -51.93 -0.36 0.97 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.11 1.98 8.14 -51.92 -0.42 1.56 16 35 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.09 1.52 6.30 -51.93 -0.33 1.20 16 37 H 0.08 0.99 4.24 -51.93 -0.22 0.77 16 38 H 0.07 0.86 7.59 -51.93 -0.39 0.47 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.06 0.65 5.39 -51.93 -0.28 0.37 16 46 H 0.06 0.76 7.15 -51.93 -0.37 0.39 16 47 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 380.79 15.07 5.74 5.74 Total: -1.00 -30.42 380.79 -8.89 -39.32 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -7.81 Total: 3.44 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 0.91 Total: -8.34 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: 0.38 Total: -59.91 kcal Atomic # 8 Polarization: -48.04 SS G_CDS: -2.43 Total: -50.47 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 55.59 SS G_CDS: -0.66 Total: 54.93 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.42 -8.89 -39.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800981209.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.439 kcal (2) G-P(sol) polarization free energy of solvation -30.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds