Wall clock time and date at job start Sat Apr 11 2020 04:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.47224 * 2 1 4 4 C 1.46499 * 119.99550 * 275.00061 * 3 2 1 5 5 C 1.50702 * 109.46889 * 274.99571 * 4 3 2 6 6 H 1.08001 * 120.00109 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00113 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00012 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00185 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47038 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47276 * 119.99763 * 9 7 5 12 12 H 1.48504 * 109.47071 * 239.99947 * 9 7 5 13 13 S 1.65604 * 120.00242 * 94.99395 * 3 2 1 14 14 O 1.42102 * 106.40046 * 336.46226 * 13 3 2 15 15 O 1.42095 * 106.40157 * 203.54091 * 13 3 2 16 16 N 1.65603 * 107.21581 * 90.00176 * 13 3 2 17 17 C 1.46499 * 119.99763 * 96.55934 * 16 13 3 18 18 C 1.52997 * 109.47365 * 74.83514 * 17 16 13 19 19 C 1.53178 * 109.54392 * 63.90562 * 18 17 16 20 20 C 1.53089 * 109.16304 * 176.84777 * 19 18 17 21 21 O 1.42906 * 109.41618 * 302.39432 * 20 19 18 22 22 C 1.42899 * 114.09906 * 61.15646 * 21 20 19 23 23 C 1.53089 * 109.41642 * 298.84487 * 22 21 20 24 24 O 1.41591 * 119.99846 * 276.55500 * 16 13 3 25 25 C 1.42898 * 114.00160 * 265.15972 * 24 16 13 26 26 H 1.09001 * 109.46731 * 60.00599 * 1 2 3 27 27 H 1.08999 * 109.47132 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47417 * 300.00341 * 1 2 3 29 29 H 1.09000 * 109.47417 * 239.99659 * 2 1 3 30 30 H 1.09001 * 109.47238 * 119.99259 * 2 1 3 31 31 H 1.08992 * 109.47492 * 34.99645 * 4 3 2 32 32 H 1.08999 * 109.46874 * 155.00010 * 4 3 2 33 33 H 0.97004 * 120.00046 * 180.02562 * 8 7 5 34 34 H 1.09008 * 109.46954 * 314.83343 * 17 16 13 35 35 H 1.08999 * 109.47263 * 194.83655 * 17 16 13 36 36 H 1.09006 * 109.61498 * 303.68663 * 18 17 16 37 37 H 1.09002 * 109.52201 * 296.75296 * 19 18 17 38 38 H 1.09003 * 109.51934 * 56.94129 * 19 18 17 39 39 H 1.08994 * 109.47940 * 182.40901 * 20 19 18 40 40 H 1.09005 * 109.48170 * 62.37485 * 20 19 18 41 41 H 1.09001 * 109.47870 * 178.86108 * 22 21 20 42 42 H 1.09001 * 109.48710 * 58.82970 * 22 21 20 43 43 H 1.09004 * 109.52125 * 297.70368 * 23 22 21 44 44 H 1.08997 * 109.52895 * 177.51622 * 23 22 21 45 45 H 1.09005 * 109.47325 * 288.05687 * 25 24 16 46 46 H 1.09000 * 109.47211 * 48.06102 * 25 24 16 47 47 H 1.09001 * 109.47116 * 168.05614 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1582 2.1086 -1.2639 5 6 3.4948 1.7887 -1.8823 6 1 4.1724 1.1117 -1.3835 7 6 3.8530 2.3612 -3.0843 8 7 3.0280 3.1860 -3.6916 9 14 5.5094 1.9641 -3.8512 10 1 6.2454 1.0163 -2.9764 11 1 5.3019 1.3473 -5.1859 12 1 6.2981 3.2135 -4.0004 13 16 2.4121 2.1204 1.4287 14 8 1.6867 1.4417 2.4448 15 8 2.3056 3.5187 1.1997 16 7 4.0143 1.8138 1.7138 17 6 5.0277 2.8017 1.3352 18 6 4.9999 3.9666 2.3267 19 6 5.3921 3.4636 3.7194 20 6 5.4381 4.6488 4.6872 21 8 6.3624 5.6241 4.2005 22 6 6.0210 6.1648 2.9226 23 6 5.9984 5.0405 1.8838 24 8 4.4047 0.5970 2.3236 25 6 4.5680 0.6832 3.7406 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.3618 1.8096 -1.9453 32 1 2.0922 3.1802 -1.0757 33 1 3.2799 3.5885 -4.5375 34 1 4.8164 3.1730 0.3324 35 1 6.0129 2.3356 1.3499 36 1 3.9974 4.3932 2.3621 37 1 4.6553 2.7388 4.0658 38 1 6.3741 2.9926 3.6733 39 1 5.7583 4.3033 5.6701 40 1 4.4462 5.0944 4.7637 41 1 6.7611 6.9113 2.6343 42 1 5.0368 6.6303 2.9759 43 1 6.9926 4.6013 1.8007 44 1 5.6953 5.4433 0.9174 45 1 5.4688 1.2531 3.9686 46 1 3.7024 1.1820 4.1764 47 1 4.6574 -0.3199 4.1577 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800981209.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:37:30 Heat of formation + Delta-G solvation = -136.069467 kcal Electronic energy + Delta-G solvation = -30428.913986 eV Core-core repulsion = 26354.285126 eV Total energy + Delta-G solvation = -4074.628860 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.160 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.58127 -38.82385 -38.48585 -37.72369 -37.05707 -35.87253 -34.69986 -32.95509 -32.13245 -31.56432 -28.56860 -28.15171 -27.05218 -24.95281 -24.43958 -23.79879 -23.32136 -21.47893 -20.24759 -19.09063 -18.76171 -18.30220 -17.99467 -17.17693 -17.13436 -16.90803 -16.43027 -16.27790 -15.83554 -15.62447 -15.56949 -15.26226 -14.95790 -14.71095 -14.65136 -14.06988 -13.84695 -13.75796 -13.60480 -13.47035 -13.37005 -13.31040 -13.13983 -13.13471 -12.79190 -12.68435 -12.44698 -12.33109 -12.23217 -12.13283 -11.98650 -11.73776 -11.62476 -11.46058 -11.32324 -11.09140 -10.73878 -10.57947 -10.22738 -9.82765 -8.16889 -6.30225 -0.67005 1.33349 1.41837 1.45040 1.56100 2.23683 2.43184 2.80935 2.94012 3.14696 3.45302 3.68246 3.71846 3.80891 3.94775 4.03779 4.25026 4.30016 4.35498 4.38957 4.41507 4.44589 4.47230 4.60963 4.65255 4.67648 4.69506 4.73959 4.77186 4.80126 4.91211 4.95414 4.97289 5.07837 5.12403 5.17660 5.24185 5.33535 5.38385 5.49439 5.74910 5.85164 6.04629 6.10643 6.21779 6.82408 7.40108 8.91372 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.010304 B = 0.005754 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.625332 B = 4864.667391 C = 6425.159187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.120 3.880 3 N -0.988 5.988 4 C 0.258 3.742 5 C -0.540 4.540 6 H 0.068 0.932 7 C 0.016 3.984 8 N -0.926 5.926 9 Si 0.954 3.046 10 H -0.262 1.262 11 H -0.281 1.281 12 H -0.279 1.279 13 S 2.798 3.202 14 O -0.993 6.993 15 O -0.985 6.985 16 N -0.865 5.865 17 C 0.120 3.880 18 C -0.127 4.127 19 C -0.162 4.162 20 C 0.057 3.943 21 O -0.395 6.395 22 C 0.061 3.939 23 C -0.144 4.144 24 O -0.134 6.134 25 C -0.029 4.029 26 H 0.051 0.949 27 H 0.093 0.907 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.024 0.976 32 H 0.023 0.977 33 H 0.266 0.734 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.116 0.884 40 H 0.046 0.954 41 H 0.114 0.886 42 H 0.048 0.952 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.051 0.949 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.317 -2.226 14.398 15.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.006 4.006 3 N -0.830 5.830 4 C 0.134 3.866 5 C -0.579 4.579 6 H 0.086 0.914 7 C -0.184 4.184 8 N -0.566 5.566 9 Si 0.780 3.220 10 H -0.186 1.186 11 H -0.207 1.207 12 H -0.204 1.204 13 S 2.806 3.194 14 O -0.977 6.977 15 O -0.970 6.970 16 N -0.742 5.742 17 C -0.005 4.005 18 C -0.147 4.147 19 C -0.199 4.199 20 C -0.020 4.020 21 O -0.314 6.314 22 C -0.016 4.016 23 C -0.183 4.183 24 O -0.140 6.140 25 C -0.127 4.127 26 H 0.070 0.930 27 H 0.112 0.888 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.043 0.957 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.124 0.876 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.134 0.866 40 H 0.064 0.936 41 H 0.132 0.868 42 H 0.066 0.934 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.070 0.930 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.928 -1.770 14.797 15.696 hybrid contribution 0.450 -0.188 -1.115 1.217 sum 5.378 -1.958 13.683 14.831 Atomic orbital electron populations 1.22195 0.95379 1.03492 1.01488 1.21274 0.94865 0.81213 1.03211 1.57681 1.78128 1.24278 1.22897 1.18816 0.96764 0.90922 0.80049 1.21817 1.02467 1.27552 1.06082 0.91419 1.25733 1.00590 0.94639 0.97400 1.70063 1.37837 1.31081 1.17582 0.85558 0.79838 0.78262 0.78381 1.18607 1.20719 1.20433 1.01596 0.72186 0.72714 0.72908 1.93509 1.70491 1.76263 1.57451 1.93574 1.85354 1.31631 1.86432 1.60633 1.23714 1.19715 1.70098 1.21759 0.93807 0.86985 0.97913 1.21890 1.00635 0.96122 0.96055 1.22763 1.03256 0.99383 0.94538 1.22726 0.93174 0.88212 0.97838 1.87877 1.50623 1.57697 1.35228 1.22664 1.01457 0.95072 0.82374 1.22129 0.99772 0.96459 0.99927 1.90520 1.90606 1.11139 1.21773 1.24060 1.01827 1.05747 0.81058 0.93029 0.88814 0.93367 0.90118 0.90058 0.95747 0.95945 0.92510 0.90442 0.87563 0.91467 0.89982 0.89489 0.86590 0.93581 0.86810 0.93382 0.89717 0.90695 0.90241 0.93008 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.19 10.24 71.98 0.74 -4.46 16 2 C 0.12 4.24 6.06 86.38 0.52 4.76 16 3 N -0.99 -41.71 2.83 -519.85 -1.47 -43.18 16 4 C 0.26 12.96 5.44 85.63 0.47 13.42 16 5 C -0.54 -28.03 9.38 25.60 0.24 -27.79 16 6 H 0.07 3.43 7.81 -2.91 -0.02 3.40 16 7 C 0.02 0.86 5.46 84.65 0.46 1.32 16 8 N -0.93 -52.64 13.29 21.45 0.28 -52.35 16 9 Si 0.95 41.59 29.54 68.60 2.03 43.62 16 10 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 12 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 13 S 2.80 113.07 6.16 -56.49 -0.35 112.72 16 14 O -0.99 -40.11 16.66 -123.54 -2.06 -42.16 16 15 O -0.99 -44.69 14.07 -128.00 -1.80 -46.49 16 16 N -0.86 -29.97 3.12 -187.49 -0.58 -30.55 16 17 C 0.12 3.91 5.07 86.38 0.44 4.35 16 18 C -0.13 -3.65 2.31 -10.68 -0.02 -3.67 16 19 C -0.16 -3.70 3.80 30.68 0.12 -3.59 16 20 C 0.06 1.20 6.84 72.01 0.49 1.69 16 21 O -0.40 -9.46 10.77 -148.98 -1.60 -11.07 16 22 C 0.06 1.37 6.84 72.01 0.49 1.87 16 23 C -0.14 -3.62 5.42 30.68 0.17 -3.45 16 24 O -0.13 -4.08 11.38 -31.69 -0.36 -4.45 16 25 C -0.03 -0.64 9.58 113.37 1.09 0.44 16 26 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.08 2.84 8.11 -2.39 -0.02 2.82 16 30 H 0.08 2.62 7.61 -2.39 -0.02 2.60 16 31 H 0.02 1.29 8.11 -2.39 -0.02 1.27 16 32 H 0.02 1.25 6.91 -2.39 -0.02 1.23 16 33 H 0.27 14.26 8.31 -92.70 -0.77 13.49 16 34 H 0.08 2.97 8.14 -2.38 -0.02 2.95 16 35 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 36 H 0.07 2.28 6.30 -2.38 -0.02 2.26 16 37 H 0.08 1.85 4.24 -2.39 -0.01 1.84 16 38 H 0.09 1.77 7.59 -2.39 -0.02 1.75 16 39 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 44 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.08 1.45 5.39 -2.38 -0.01 1.43 16 46 H 0.05 1.23 7.15 -2.39 -0.02 1.22 16 47 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -65.56 380.79 0.23 -65.33 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.95 Total: 23.68 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: 5.20 Total: -15.10 kcal Atomic # 7 Polarization: -124.32 SS G_CDS: -1.77 Total: -126.09 kcal Atomic # 8 Polarization: -98.34 SS G_CDS: -5.82 Total: -104.17 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 16 Polarization: 113.07 SS G_CDS: -0.35 Total: 112.72 kcal Total: -65.56 0.23 -65.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800981209.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.737 kcal (2) G-P(sol) polarization free energy of solvation -65.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds