Wall clock time and date at job start Sat Apr 11 2020 04:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 N 1.41594 * 113.99823 * 2 1 4 4 C 1.46495 * 120.00375 * 274.47739 * 3 2 1 5 5 C 1.53005 * 109.47575 * 277.08368 * 4 3 2 6 6 C 1.53172 * 109.54243 * 293.51384 * 5 4 3 7 7 C 1.53099 * 109.16160 * 183.14826 * 6 5 4 8 8 O 1.42903 * 109.41281 * 57.60808 * 7 6 5 9 9 C 1.42903 * 114.09693 * 298.84420 * 8 7 6 10 10 C 1.53090 * 109.41783 * 61.15904 * 9 8 7 11 11 S 1.65602 * 119.99733 * 94.48343 * 3 2 1 12 12 O 1.42105 * 106.40441 * 152.77400 * 11 3 2 13 13 O 1.42101 * 106.40153 * 19.85288 * 11 3 2 14 14 N 1.65599 * 107.21615 * 266.31046 * 11 3 2 15 15 C 1.46500 * 120.00235 * 273.66547 * 14 11 3 16 16 C 1.46504 * 119.99953 * 93.66776 * 14 11 3 17 17 H 1.08997 * 109.47073 * 354.37322 * 16 14 11 18 18 C 1.52995 * 109.47190 * 234.36997 * 16 14 11 19 19 C 1.50701 * 109.46893 * 114.36822 * 16 14 11 20 20 H 1.07997 * 120.00426 * 4.93349 * 19 16 14 21 21 C 1.37883 * 119.99593 * 184.93037 * 19 16 14 22 22 N 1.31513 * 119.99885 * 9.65209 * 21 19 16 23 23 Si 1.86801 * 119.99853 * 189.92269 * 21 19 16 24 24 H 1.48503 * 109.47051 * 269.72739 * 23 21 19 25 25 H 1.48496 * 109.46925 * 29.72621 * 23 21 19 26 26 H 1.48496 * 109.47095 * 149.72735 * 23 21 19 27 27 H 1.09003 * 109.47188 * 182.46864 * 1 2 3 28 28 H 1.09000 * 109.47198 * 302.46918 * 1 2 3 29 29 H 1.08995 * 109.47660 * 62.47264 * 1 2 3 30 30 H 1.08998 * 109.47193 * 37.08598 * 4 3 2 31 31 H 1.09001 * 109.47679 * 157.08541 * 4 3 2 32 32 H 1.09004 * 109.53914 * 53.78294 * 5 4 3 33 33 H 1.09000 * 109.52636 * 303.05325 * 6 5 4 34 34 H 1.09004 * 109.52293 * 63.24834 * 6 5 4 35 35 H 1.08999 * 109.47975 * 297.62302 * 7 6 5 36 36 H 1.08998 * 109.47977 * 177.59369 * 7 6 5 37 37 H 1.09004 * 109.47858 * 301.16908 * 9 8 7 38 38 H 1.09003 * 109.48713 * 181.14870 * 9 8 7 39 39 H 1.08997 * 109.51935 * 182.48340 * 10 9 8 40 40 H 1.08998 * 109.52017 * 62.29295 * 10 9 8 41 41 H 1.08995 * 109.47003 * 270.00227 * 15 14 11 42 42 H 1.09003 * 109.46847 * 30.00002 * 15 14 11 43 43 H 1.09002 * 109.47249 * 150.00245 * 15 14 11 44 44 H 1.08999 * 109.47305 * 293.04057 * 18 16 14 45 45 H 1.09000 * 109.46949 * 53.03962 * 18 16 14 46 46 H 1.08996 * 109.47050 * 173.04127 * 18 16 14 47 47 H 0.97000 * 120.00337 * 356.97306 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 2.2123 2.0031 -1.2648 5 6 3.5193 1.5318 -1.9056 6 6 4.7026 1.9675 -1.0360 7 6 6.0085 1.5609 -1.7241 8 8 6.0647 2.1523 -3.0237 9 6 5.0093 1.7444 -3.8966 10 6 3.6634 2.1584 -3.2959 11 16 2.4440 2.0043 1.4298 12 8 3.5021 2.9020 1.1234 13 8 2.5662 0.9540 2.3791 14 7 1.1686 2.9369 1.9256 15 6 1.0366 4.3138 1.4431 16 6 0.1721 2.3849 2.8470 17 1 0.3787 1.3280 3.0148 18 6 -1.2242 2.5420 2.2418 19 6 0.2372 3.1239 4.1587 20 1 0.8926 3.9754 4.2670 21 6 -0.5402 2.7129 5.2208 22 7 -1.1918 1.5724 5.1561 23 14 -0.6738 3.7797 6.7484 24 1 0.3919 3.4016 7.7109 25 1 -0.5159 5.2071 6.3706 26 1 -2.0036 3.5784 7.3779 27 1 -0.3634 -1.0267 0.0443 28 1 -0.3633 0.5517 0.8670 29 1 -0.3634 0.4749 -0.9112 30 1 1.3814 1.7948 -1.9388 31 1 2.2665 3.0751 -1.0754 32 1 3.5108 0.4454 -1.9944 33 1 4.6807 3.0496 -0.9067 34 1 4.6374 1.4819 -0.0623 35 1 6.0479 0.4755 -1.8165 36 1 6.8549 1.9063 -1.1305 37 1 5.0358 0.6614 -4.0176 38 1 5.1360 2.2218 -4.8682 39 1 2.8551 1.8094 -3.9384 40 1 3.6205 3.2443 -3.2122 41 1 1.5580 4.9883 2.1222 42 1 1.4721 4.3930 0.4470 43 1 -0.0184 4.5845 1.4010 44 1 -1.4803 3.6001 2.1884 45 1 -1.2359 2.1143 1.2392 46 1 -1.9514 2.0233 2.8665 47 1 -1.1610 1.0415 4.3449 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800982791.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:37:34 Heat of formation + Delta-G solvation = -115.759194 kcal Electronic energy + Delta-G solvation = -30226.652729 eV Core-core repulsion = 26152.904589 eV Total energy + Delta-G solvation = -4073.748140 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.58252 -37.68610 -37.01839 -36.54119 -35.43932 -34.98432 -32.86679 -31.78101 -31.08188 -29.15362 -27.41162 -25.96770 -25.92923 -24.77072 -23.63281 -22.80578 -20.97974 -20.17685 -19.27532 -17.92190 -17.27056 -17.18246 -16.68401 -16.21016 -16.03366 -15.40337 -15.02604 -14.86523 -14.67381 -14.40689 -14.02900 -13.84614 -13.74145 -13.49193 -13.25442 -13.03266 -12.68286 -12.39292 -12.28534 -12.15545 -11.84825 -11.76945 -11.65956 -11.52687 -11.35078 -11.31738 -11.12288 -11.09042 -10.79968 -10.72370 -10.58356 -10.36636 -10.31378 -10.15592 -10.06445 -9.78296 -9.23459 -9.22520 -8.42277 -8.01200 -6.46260 -4.18649 0.66075 2.62371 3.40512 3.42515 3.58073 3.76275 3.78160 4.03130 4.45993 4.53386 4.56975 4.70626 4.84307 4.92118 5.09704 5.13970 5.22146 5.24148 5.28678 5.36237 5.38809 5.39814 5.47006 5.56036 5.58558 5.67802 5.69836 5.81870 5.83384 5.89887 5.97894 6.13281 6.18648 6.31109 6.33977 6.41727 6.45364 6.55107 6.89402 7.03878 7.09411 7.28845 7.45116 7.98277 8.37363 8.72715 9.50451 10.90392 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.022568 B = 0.003703 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.399070 B = 7559.999674 C = 7985.775765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 O -0.116 6.116 3 N -0.874 5.874 4 C 0.119 3.881 5 C -0.107 4.107 6 C -0.148 4.148 7 C 0.060 3.940 8 O -0.385 6.385 9 C 0.062 3.938 10 C -0.149 4.149 11 S 2.771 3.229 12 O -0.965 6.965 13 O -0.951 6.951 14 N -0.984 5.984 15 C 0.106 3.894 16 C 0.255 3.745 17 H 0.051 0.949 18 C -0.154 4.154 19 C -0.606 4.606 20 H 0.058 0.942 21 C 0.026 3.974 22 N -0.904 5.904 23 Si 1.071 2.929 24 H -0.287 1.287 25 H -0.287 1.287 26 H -0.283 1.283 27 H 0.105 0.895 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.047 0.953 36 H 0.095 0.905 37 H 0.048 0.952 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.050 0.950 45 H 0.022 0.978 46 H 0.066 0.934 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.766 0.711 -17.866 18.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 O -0.123 6.123 3 N -0.748 5.748 4 C -0.007 4.007 5 C -0.127 4.127 6 C -0.186 4.186 7 C -0.016 4.016 8 O -0.304 6.304 9 C -0.015 4.015 10 C -0.187 4.187 11 S 2.780 3.220 12 O -0.949 6.949 13 O -0.935 6.935 14 N -0.827 5.827 15 C -0.040 4.040 16 C 0.152 3.848 17 H 0.068 0.932 18 C -0.214 4.214 19 C -0.645 4.645 20 H 0.076 0.924 21 C -0.180 4.180 22 N -0.540 5.540 23 Si 0.898 3.102 24 H -0.213 1.213 25 H -0.213 1.213 26 H -0.209 1.209 27 H 0.123 0.877 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.113 0.887 37 H 0.066 0.934 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.069 0.931 45 H 0.041 0.959 46 H 0.084 0.916 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.175 0.587 -15.977 16.805 hybrid contribution -0.409 -0.190 -1.677 1.736 sum 4.767 0.397 -17.654 18.291 Atomic orbital electron populations 1.23598 0.82313 1.04087 1.01849 1.90611 1.19584 1.05506 1.96614 1.61454 1.72792 1.18247 1.22336 1.21619 0.97501 0.95427 0.86117 1.21633 0.95143 1.01261 0.94664 1.22358 0.93853 1.03878 0.98466 1.22642 0.98420 0.96939 0.83614 1.87916 1.48625 1.70003 1.23817 1.22525 0.86603 0.99004 0.93320 1.22201 0.98326 1.02006 0.96211 1.02705 0.73978 0.73277 0.72076 1.93629 1.51799 1.64946 1.84551 1.93612 1.85515 1.56261 1.58108 1.57780 1.45396 1.21833 1.57689 1.21234 1.02882 0.83029 0.96861 1.18839 0.83319 0.95192 0.87481 0.93185 1.22295 1.00278 1.01189 0.97632 1.22113 1.28310 1.17264 0.96813 0.92375 1.25798 0.93344 0.96938 1.01884 1.70795 1.42372 1.10691 1.30130 0.83525 0.76793 0.74864 0.74977 1.21313 1.21344 1.20877 0.87687 0.91703 0.93120 0.90126 0.89184 0.90123 0.89264 0.91311 0.93434 0.88729 0.93351 0.89022 0.90825 0.90659 0.92630 0.93347 0.90896 0.93141 0.95869 0.91562 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.27 11.45 101.05 1.16 0.89 16 2 O -0.12 -1.88 11.28 -22.74 -0.26 -2.13 16 3 N -0.87 -13.88 3.11 -10.61 -0.03 -13.91 16 4 C 0.12 1.45 5.32 -4.04 -0.02 1.43 16 5 C -0.11 -1.24 2.47 -90.44 -0.22 -1.47 16 6 C -0.15 -2.01 3.83 -26.59 -0.10 -2.12 16 7 C 0.06 0.72 6.84 37.21 0.25 0.98 16 8 O -0.38 -4.70 10.77 -35.23 -0.38 -5.08 16 9 C 0.06 0.58 6.84 37.20 0.25 0.84 16 10 C -0.15 -1.35 5.42 -26.59 -0.14 -1.50 16 11 S 2.77 54.98 5.55 -107.50 -0.60 54.38 16 12 O -0.96 -18.69 12.86 -57.17 -0.74 -19.42 16 13 O -0.95 -23.27 16.29 -62.92 -1.02 -24.29 16 14 N -0.98 -19.84 3.12 -115.85 -0.36 -20.20 16 15 C 0.11 1.77 9.74 59.85 0.58 2.35 16 16 C 0.26 6.03 1.79 -69.08 -0.12 5.90 16 17 H 0.05 1.33 6.29 -51.93 -0.33 1.00 16 18 C -0.15 -3.18 8.13 37.16 0.30 -2.88 16 19 C -0.61 -16.27 8.40 -34.44 -0.29 -16.55 16 20 H 0.06 1.57 7.77 -52.49 -0.41 1.17 16 21 C 0.03 0.71 5.24 -17.82 -0.09 0.62 16 22 N -0.90 -26.00 13.15 55.43 0.73 -25.27 16 23 Si 1.07 24.53 29.92 -169.99 -5.09 19.44 16 24 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 27 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.06 1.02 5.27 -51.93 -0.27 0.74 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 1.04 6.75 -51.93 -0.35 0.69 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.09 1.30 7.45 -51.93 -0.39 0.91 16 34 H 0.07 1.08 6.14 -51.93 -0.32 0.76 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.64 7.00 -51.93 -0.36 0.28 16 43 H 0.07 1.15 6.31 -51.93 -0.33 0.82 16 44 H 0.05 1.00 6.85 -51.93 -0.36 0.65 16 45 H 0.02 0.40 6.29 -51.93 -0.33 0.07 16 46 H 0.07 1.48 6.45 -51.93 -0.34 1.15 16 47 H 0.27 7.65 5.90 -40.82 -0.24 7.41 16 LS Contribution 370.88 15.07 5.59 5.59 Total: -1.00 -32.93 370.88 -8.06 -40.99 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -7.46 Total: 1.42 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 1.55 Total: -11.52 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.33 Total: -59.38 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: -2.40 Total: -50.93 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -5.09 Total: 19.44 kcal Atomic # 16 Polarization: 54.98 SS G_CDS: -0.60 Total: 54.38 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.93 -8.06 -40.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800982791.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.769 kcal (2) G-P(sol) polarization free energy of solvation -32.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds