Wall clock time and date at job start Sat Apr 11 2020 04:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 N 1.41594 * 113.99823 * 2 1 4 4 C 1.46495 * 120.00375 * 274.47739 * 3 2 1 5 5 C 1.53005 * 109.47575 * 277.08368 * 4 3 2 6 6 C 1.53172 * 109.54243 * 293.51384 * 5 4 3 7 7 C 1.53099 * 109.16160 * 183.14826 * 6 5 4 8 8 O 1.42903 * 109.41281 * 57.60808 * 7 6 5 9 9 C 1.42903 * 114.09693 * 298.84420 * 8 7 6 10 10 C 1.53090 * 109.41783 * 61.15904 * 9 8 7 11 11 S 1.65602 * 119.99733 * 94.48343 * 3 2 1 12 12 O 1.42105 * 106.40441 * 152.77400 * 11 3 2 13 13 O 1.42101 * 106.40153 * 19.85288 * 11 3 2 14 14 N 1.65599 * 107.21615 * 266.31046 * 11 3 2 15 15 C 1.46500 * 120.00235 * 273.66547 * 14 11 3 16 16 C 1.46504 * 119.99953 * 93.66776 * 14 11 3 17 17 H 1.08997 * 109.47073 * 354.37322 * 16 14 11 18 18 C 1.52995 * 109.47190 * 234.36997 * 16 14 11 19 19 C 1.50701 * 109.46893 * 114.36822 * 16 14 11 20 20 H 1.07997 * 120.00426 * 4.93349 * 19 16 14 21 21 C 1.37883 * 119.99593 * 184.93037 * 19 16 14 22 22 N 1.31513 * 119.99885 * 9.65209 * 21 19 16 23 23 Si 1.86801 * 119.99853 * 189.92269 * 21 19 16 24 24 H 1.48503 * 109.47051 * 269.72739 * 23 21 19 25 25 H 1.48496 * 109.46925 * 29.72621 * 23 21 19 26 26 H 1.48496 * 109.47095 * 149.72735 * 23 21 19 27 27 H 1.09003 * 109.47188 * 182.46864 * 1 2 3 28 28 H 1.09000 * 109.47198 * 302.46918 * 1 2 3 29 29 H 1.08995 * 109.47660 * 62.47264 * 1 2 3 30 30 H 1.08998 * 109.47193 * 37.08598 * 4 3 2 31 31 H 1.09001 * 109.47679 * 157.08541 * 4 3 2 32 32 H 1.09004 * 109.53914 * 53.78294 * 5 4 3 33 33 H 1.09000 * 109.52636 * 303.05325 * 6 5 4 34 34 H 1.09004 * 109.52293 * 63.24834 * 6 5 4 35 35 H 1.08999 * 109.47975 * 297.62302 * 7 6 5 36 36 H 1.08998 * 109.47977 * 177.59369 * 7 6 5 37 37 H 1.09004 * 109.47858 * 301.16908 * 9 8 7 38 38 H 1.09003 * 109.48713 * 181.14870 * 9 8 7 39 39 H 1.08997 * 109.51935 * 182.48340 * 10 9 8 40 40 H 1.08998 * 109.52017 * 62.29295 * 10 9 8 41 41 H 1.08995 * 109.47003 * 270.00227 * 15 14 11 42 42 H 1.09003 * 109.46847 * 30.00002 * 15 14 11 43 43 H 1.09002 * 109.47249 * 150.00245 * 15 14 11 44 44 H 1.08999 * 109.47305 * 293.04057 * 18 16 14 45 45 H 1.09000 * 109.46949 * 53.03962 * 18 16 14 46 46 H 1.08996 * 109.47050 * 173.04127 * 18 16 14 47 47 H 0.97000 * 120.00337 * 356.97306 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 2.2123 2.0031 -1.2648 5 6 3.5193 1.5318 -1.9056 6 6 4.7026 1.9675 -1.0360 7 6 6.0085 1.5609 -1.7241 8 8 6.0647 2.1523 -3.0237 9 6 5.0093 1.7444 -3.8966 10 6 3.6634 2.1584 -3.2959 11 16 2.4440 2.0043 1.4298 12 8 3.5021 2.9020 1.1234 13 8 2.5662 0.9540 2.3791 14 7 1.1686 2.9369 1.9256 15 6 1.0366 4.3138 1.4431 16 6 0.1721 2.3849 2.8470 17 1 0.3787 1.3280 3.0148 18 6 -1.2242 2.5420 2.2418 19 6 0.2372 3.1239 4.1587 20 1 0.8926 3.9754 4.2670 21 6 -0.5402 2.7129 5.2208 22 7 -1.1918 1.5724 5.1561 23 14 -0.6738 3.7797 6.7484 24 1 0.3919 3.4016 7.7109 25 1 -0.5159 5.2071 6.3706 26 1 -2.0036 3.5784 7.3779 27 1 -0.3634 -1.0267 0.0443 28 1 -0.3633 0.5517 0.8670 29 1 -0.3634 0.4749 -0.9112 30 1 1.3814 1.7948 -1.9388 31 1 2.2665 3.0751 -1.0754 32 1 3.5108 0.4454 -1.9944 33 1 4.6807 3.0496 -0.9067 34 1 4.6374 1.4819 -0.0623 35 1 6.0479 0.4755 -1.8165 36 1 6.8549 1.9063 -1.1305 37 1 5.0358 0.6614 -4.0176 38 1 5.1360 2.2218 -4.8682 39 1 2.8551 1.8094 -3.9384 40 1 3.6205 3.2443 -3.2122 41 1 1.5580 4.9883 2.1222 42 1 1.4721 4.3930 0.4470 43 1 -0.0184 4.5845 1.4010 44 1 -1.4803 3.6001 2.1884 45 1 -1.2359 2.1143 1.2392 46 1 -1.9514 2.0233 2.8665 47 1 -1.1610 1.0415 4.3449 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800982791.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:37:33 Heat of formation + Delta-G solvation = -139.319313 kcal Electronic energy + Delta-G solvation = -30227.674372 eV Core-core repulsion = 26152.904589 eV Total energy + Delta-G solvation = -4074.769784 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.160 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.48084 -38.91399 -38.56389 -38.23323 -37.10101 -36.02499 -34.77743 -32.83925 -31.97778 -30.89493 -28.44355 -27.48176 -27.13861 -26.59864 -24.51865 -23.75893 -22.74701 -21.09023 -20.68537 -19.52605 -18.87362 -18.70075 -18.12912 -17.16060 -16.92465 -16.77310 -16.36559 -15.86464 -15.74035 -15.68436 -15.61522 -15.39857 -15.29435 -14.70837 -14.59519 -14.10394 -13.88593 -13.83387 -13.61303 -13.45950 -13.40800 -13.26933 -13.15009 -12.91832 -12.85320 -12.70630 -12.49479 -12.28921 -12.19961 -12.13738 -12.06677 -11.91636 -11.54722 -11.27633 -11.23757 -11.06013 -10.78019 -10.46003 -10.28693 -9.73889 -8.61306 -6.34334 -0.84256 1.28388 1.54149 1.60978 1.79053 2.23764 2.56820 2.69906 2.96935 3.16434 3.32533 3.66070 3.73881 3.84152 3.87969 4.07790 4.18770 4.27703 4.28237 4.31897 4.44505 4.45945 4.48903 4.54381 4.60472 4.63370 4.66795 4.70933 4.79296 4.80995 4.82653 4.85567 4.91675 4.98475 5.03657 5.15212 5.22290 5.28445 5.45102 5.50092 5.67897 5.89828 6.00920 6.26185 6.26521 6.58904 7.41960 8.75610 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.022568 B = 0.003703 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.399070 B = 7559.999674 C = 7985.775765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 O -0.133 6.133 3 N -0.867 5.867 4 C 0.110 3.890 5 C -0.105 4.105 6 C -0.151 4.151 7 C 0.062 3.938 8 O -0.401 6.401 9 C 0.053 3.947 10 C -0.141 4.141 11 S 2.784 3.216 12 O -0.967 6.967 13 O -1.008 7.008 14 N -0.991 5.991 15 C 0.097 3.903 16 C 0.259 3.741 17 H 0.015 0.985 18 C -0.139 4.139 19 C -0.619 4.619 20 H 0.049 0.951 21 C -0.021 4.021 22 N -0.928 5.928 23 Si 1.110 2.890 24 H -0.284 1.284 25 H -0.267 1.267 26 H -0.279 1.279 27 H 0.127 0.873 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.039 0.961 35 H 0.055 0.945 36 H 0.094 0.906 37 H 0.056 0.944 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.045 0.955 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.043 0.957 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.135 1.746 -20.599 21.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 O -0.139 6.139 3 N -0.745 5.745 4 C -0.014 4.014 5 C -0.126 4.126 6 C -0.189 4.189 7 C -0.015 4.015 8 O -0.320 6.320 9 C -0.023 4.023 10 C -0.179 4.179 11 S 2.794 3.206 12 O -0.951 6.951 13 O -0.992 6.992 14 N -0.833 5.833 15 C -0.048 4.048 16 C 0.155 3.845 17 H 0.032 0.968 18 C -0.199 4.199 19 C -0.658 4.658 20 H 0.068 0.932 21 C -0.221 4.221 22 N -0.565 5.565 23 Si 0.932 3.068 24 H -0.210 1.210 25 H -0.192 1.192 26 H -0.204 1.204 27 H 0.144 0.856 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.133 0.867 31 H 0.117 0.883 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.132 0.868 39 H 0.120 0.880 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.062 0.938 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.552 1.645 -18.737 19.352 hybrid contribution -0.144 -0.544 -0.958 1.111 sum 4.409 1.100 -19.695 20.212 Atomic orbital electron populations 1.23795 0.80804 1.05545 1.02200 1.90600 1.21252 1.05344 1.96718 1.60948 1.72875 1.18265 1.22384 1.22018 0.99072 0.95466 0.84804 1.21638 0.93777 1.01321 0.95818 1.22332 0.96024 1.02693 0.97840 1.22591 0.97609 0.97402 0.83867 1.87897 1.49965 1.70367 1.23783 1.22798 0.85956 0.99882 0.93638 1.22181 0.99165 1.01946 0.94640 1.02002 0.73861 0.72574 0.72155 1.93623 1.51884 1.64913 1.84676 1.93535 1.86373 1.58241 1.61075 1.57669 1.44443 1.23405 1.57812 1.21499 1.03951 0.80903 0.98440 1.18538 0.85617 0.92905 0.87488 0.96765 1.22071 0.97381 1.01609 0.98799 1.22484 1.27684 1.17008 0.98647 0.93240 1.27062 0.93016 0.97280 1.04776 1.70891 1.43931 1.11696 1.30015 0.83029 0.76924 0.74575 0.72234 1.21041 1.19181 1.20394 0.85559 0.94243 0.89873 0.86738 0.88281 0.90368 0.90568 0.94187 0.92631 0.88753 0.92561 0.86830 0.87991 0.90459 0.93661 0.89631 0.89740 0.92351 0.92444 0.93800 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.64 11.45 113.37 1.30 0.66 16 2 O -0.13 -4.15 11.28 -27.99 -0.32 -4.47 16 3 N -0.87 -26.48 3.11 -187.49 -0.58 -27.06 16 4 C 0.11 2.37 5.32 86.38 0.46 2.83 16 5 C -0.11 -2.21 2.47 -10.68 -0.03 -2.24 16 6 C -0.15 -4.03 3.83 30.69 0.12 -3.91 16 7 C 0.06 1.44 6.84 72.02 0.49 1.94 16 8 O -0.40 -9.08 10.77 -148.98 -1.60 -10.69 16 9 C 0.05 0.83 6.84 72.01 0.49 1.32 16 10 C -0.14 -2.05 5.42 30.68 0.17 -1.88 16 11 S 2.78 111.59 5.55 -56.49 -0.31 111.28 16 12 O -0.97 -37.59 12.86 -128.00 -1.65 -39.24 16 13 O -1.01 -51.58 16.29 -122.51 -2.00 -53.57 16 14 N -0.99 -39.73 3.12 -520.45 -1.62 -41.35 16 15 C 0.10 3.07 9.74 127.77 1.24 4.32 16 16 C 0.26 12.44 1.79 44.24 0.08 12.52 16 17 H 0.01 0.81 6.29 -2.39 -0.02 0.79 16 18 C -0.14 -5.67 8.13 71.98 0.59 -5.08 16 19 C -0.62 -33.82 8.40 25.60 0.22 -33.61 16 20 H 0.05 2.72 7.77 -2.91 -0.02 2.69 16 21 C -0.02 -1.19 5.24 84.66 0.44 -0.74 16 22 N -0.93 -54.69 13.15 21.45 0.28 -54.41 16 23 Si 1.11 49.53 29.92 68.60 2.05 51.58 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 25 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 26 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 27 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.04 1.20 5.27 -2.39 -0.01 1.19 16 29 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.10 1.96 6.75 -2.39 -0.02 1.95 16 32 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.08 2.19 7.45 -2.39 -0.02 2.17 16 34 H 0.04 1.28 6.14 -2.38 -0.01 1.27 16 35 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.09 2.04 7.00 -2.39 -0.02 2.02 16 43 H 0.08 2.47 6.31 -2.39 -0.02 2.45 16 44 H 0.06 2.24 6.85 -2.39 -0.02 2.23 16 45 H 0.06 1.90 6.29 -2.39 -0.02 1.88 16 46 H 0.04 1.97 6.45 -2.39 -0.02 1.96 16 47 H 0.26 15.39 5.90 -92.71 -0.55 14.84 16 Total: -1.00 -74.50 370.88 1.01 -73.49 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 1.18 Total: 18.31 kcal Atomic # 6 Polarization: -29.45 SS G_CDS: 5.57 Total: -23.88 kcal Atomic # 7 Polarization: -120.90 SS G_CDS: -1.92 Total: -122.82 kcal Atomic # 8 Polarization: -102.40 SS G_CDS: -5.56 Total: -107.96 kcal Atomic # 14 Polarization: 49.53 SS G_CDS: 2.05 Total: 51.58 kcal Atomic # 16 Polarization: 111.59 SS G_CDS: -0.31 Total: 111.28 kcal Total: -74.50 1.01 -73.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800982791.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.825 kcal (2) G-P(sol) polarization free energy of solvation -74.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds