Wall clock time and date at job start Sat Apr 11 2020 04:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 N 1.41600 * 114.00053 * 2 1 4 4 C 1.46499 * 119.99646 * 270.00098 * 3 2 1 5 5 C 1.53000 * 109.47135 * 269.99789 * 4 3 2 6 6 C 1.53177 * 109.54355 * 294.56071 * 5 4 3 7 7 C 1.53093 * 109.16564 * 183.15115 * 6 5 4 8 8 O 1.42902 * 109.41344 * 57.60628 * 7 6 5 9 9 C 1.42907 * 114.09769 * 298.83983 * 8 7 6 10 10 C 1.53093 * 109.40924 * 61.16327 * 9 8 7 11 11 S 1.65599 * 120.00016 * 90.00025 * 3 2 1 12 12 O 1.42100 * 106.40241 * 156.45960 * 11 3 2 13 13 O 1.42096 * 106.40379 * 23.53582 * 11 3 2 14 14 N 1.65608 * 107.21718 * 269.99744 * 11 3 2 15 15 C 1.46494 * 119.99583 * 90.00246 * 14 11 3 16 16 C 1.46493 * 119.99916 * 269.72928 * 14 11 3 17 17 H 1.09001 * 109.47343 * 359.97438 * 16 14 11 18 18 C 1.53002 * 109.47467 * 120.00112 * 16 14 11 19 19 C 1.50700 * 109.46798 * 239.99852 * 16 14 11 20 20 H 1.08003 * 120.00301 * 359.97438 * 19 16 14 21 21 C 1.37883 * 120.00019 * 180.02562 * 19 16 14 22 22 N 1.31514 * 119.99724 * 0.02562 * 21 19 16 23 23 Si 1.86801 * 119.99983 * 179.97438 * 21 19 16 24 24 H 1.48498 * 109.46974 * 60.00157 * 23 21 19 25 25 H 1.48499 * 109.46906 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47374 * 300.00295 * 23 21 19 27 27 H 1.08994 * 109.46758 * 60.00091 * 1 2 3 28 28 H 1.09002 * 109.46901 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46900 * 300.00254 * 1 2 3 30 30 H 1.09001 * 109.47517 * 29.99723 * 4 3 2 31 31 H 1.08997 * 109.47269 * 150.00256 * 4 3 2 32 32 H 1.09003 * 109.54378 * 54.82290 * 5 4 3 33 33 H 1.09003 * 109.52065 * 303.05638 * 6 5 4 34 34 H 1.09005 * 109.52732 * 63.24614 * 6 5 4 35 35 H 1.08997 * 109.48112 * 297.62354 * 7 6 5 36 36 H 1.08994 * 109.48242 * 177.59155 * 7 6 5 37 37 H 1.08991 * 109.48089 * 301.18027 * 9 8 7 38 38 H 1.08993 * 109.48867 * 181.14481 * 9 8 7 39 39 H 1.09001 * 109.52090 * 182.48631 * 10 9 8 40 40 H 1.08998 * 109.52823 * 62.29815 * 10 9 8 41 41 H 1.08995 * 109.47693 * 90.00177 * 15 14 11 42 42 H 1.09003 * 109.47006 * 210.00091 * 15 14 11 43 43 H 1.09004 * 109.47665 * 329.99783 * 15 14 11 44 44 H 1.09000 * 109.46462 * 299.99928 * 18 16 14 45 45 H 1.09001 * 109.46975 * 59.99603 * 18 16 14 46 46 H 1.08994 * 109.47439 * 179.97438 * 18 16 14 47 47 H 0.97008 * 119.99813 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 2.3029 1.9627 -1.2688 5 6 3.7244 1.6089 -1.7105 6 6 4.7306 2.1895 -0.7121 7 6 6.1510 1.8986 -1.2034 8 8 6.3251 2.4535 -2.5087 9 6 5.4429 1.9135 -3.4947 10 6 3.9940 2.2051 -3.0954 11 16 2.3418 2.0500 1.4341 12 8 3.3610 3.0005 1.1568 13 8 2.4804 1.0232 2.4065 14 7 0.9964 2.9174 1.8586 15 6 -0.0455 2.2972 2.6808 16 6 0.8511 4.3066 1.4170 17 1 1.7204 4.5924 0.8248 18 6 -0.4132 4.4417 0.5659 19 6 0.7452 5.2077 2.6203 20 1 0.7820 4.7875 3.6145 21 6 0.6002 6.5685 2.4519 22 7 0.5539 7.0799 1.2412 23 14 0.4683 7.6853 3.9434 24 1 1.6952 7.5548 4.7696 25 1 0.3211 9.0936 3.4958 26 1 -0.7157 7.2956 4.7505 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.5939 1.6335 -2.0284 31 1 2.2209 3.0417 -1.1385 32 1 3.8342 0.5252 -1.7523 33 1 4.5858 3.2670 -0.6339 34 1 4.5816 1.7292 0.2647 35 1 6.3085 0.8207 -1.2426 36 1 6.8713 2.3465 -0.5189 37 1 5.5910 0.8359 -3.5639 38 1 5.6530 2.3721 -4.4609 39 1 3.3182 1.7559 -3.8231 40 1 3.8343 3.2829 -3.0654 41 1 0.1735 2.4681 3.7347 42 1 -1.0122 2.7368 2.4347 43 1 -0.0734 1.2254 2.4846 44 1 -0.3366 3.7898 -0.3044 45 1 -1.2823 4.1559 1.1585 46 1 -0.5216 5.4753 0.2377 47 1 0.4515 8.0373 1.1227 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800982792.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:37:36 Heat of formation + Delta-G solvation = -107.642417 kcal Electronic energy + Delta-G solvation = -30423.209592 eV Core-core repulsion = 26349.813422 eV Total energy + Delta-G solvation = -4073.396170 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.160 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.41562 -37.65722 -36.94965 -36.31029 -35.46193 -34.80982 -32.67097 -31.64996 -30.88698 -29.21583 -27.32392 -25.94759 -25.66587 -25.21336 -23.45591 -22.70664 -20.82054 -19.98382 -19.16899 -17.69885 -17.14737 -16.94332 -16.40109 -16.03719 -15.84595 -15.30637 -15.22231 -14.72676 -14.54395 -14.42761 -14.37401 -13.68872 -13.60110 -13.31649 -13.09384 -12.90037 -12.62907 -12.27139 -12.13007 -11.97200 -11.86070 -11.58495 -11.46690 -11.41780 -11.25879 -11.11693 -11.04120 -10.93327 -10.87212 -10.57572 -10.42437 -10.32029 -10.16752 -10.08173 -10.05386 -9.59756 -9.35712 -9.09325 -8.51364 -8.09965 -6.13771 -4.20571 0.75257 2.64744 3.26945 3.31714 3.35050 3.84149 3.96142 4.10750 4.35511 4.69504 4.76725 4.89517 4.95780 5.10462 5.16534 5.19803 5.26410 5.27218 5.37570 5.41076 5.45535 5.55594 5.64510 5.66623 5.73379 5.76501 5.88274 5.95244 6.01635 6.03647 6.16651 6.28292 6.38007 6.49419 6.63319 6.67119 6.75187 6.88378 7.01311 7.27480 7.35374 7.53345 7.69433 7.95031 8.18739 8.81171 9.45705 10.91889 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.012552 B = 0.004745 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.190095 B = 5898.983804 C = 6939.562509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 O -0.121 6.121 3 N -0.871 5.871 4 C 0.120 3.880 5 C -0.107 4.107 6 C -0.148 4.148 7 C 0.060 3.940 8 O -0.384 6.384 9 C 0.063 3.937 10 C -0.150 4.150 11 S 2.767 3.233 12 O -0.943 6.943 13 O -0.977 6.977 14 N -0.987 5.987 15 C 0.104 3.896 16 C 0.267 3.733 17 H 0.061 0.939 18 C -0.149 4.149 19 C -0.521 4.521 20 H 0.062 0.938 21 C 0.065 3.935 22 N -0.890 5.890 23 Si 0.899 3.101 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.277 1.277 27 H 0.055 0.945 28 H 0.103 0.897 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.044 0.956 36 H 0.094 0.906 37 H 0.046 0.954 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.049 0.951 44 H 0.008 0.992 45 H 0.034 0.966 46 H 0.095 0.905 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.036 -11.935 -8.499 14.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 O -0.129 6.129 3 N -0.745 5.745 4 C -0.005 4.005 5 C -0.127 4.127 6 C -0.186 4.186 7 C -0.016 4.016 8 O -0.303 6.303 9 C -0.014 4.014 10 C -0.188 4.188 11 S 2.777 3.223 12 O -0.927 6.927 13 O -0.960 6.960 14 N -0.831 5.831 15 C -0.042 4.042 16 C 0.164 3.836 17 H 0.078 0.922 18 C -0.209 4.209 19 C -0.561 4.561 20 H 0.080 0.920 21 C -0.137 4.137 22 N -0.528 5.528 23 Si 0.726 3.274 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.202 1.202 27 H 0.073 0.927 28 H 0.121 0.879 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.112 0.888 37 H 0.065 0.935 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.068 0.932 44 H 0.027 0.973 45 H 0.053 0.947 46 H 0.113 0.887 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.073 -11.883 -8.167 14.568 hybrid contribution -1.212 0.464 0.606 1.433 sum 0.861 -11.419 -7.561 13.723 Atomic orbital electron populations 1.23541 0.82724 1.03574 1.01859 1.90592 1.19200 1.06449 1.96627 1.61447 1.72467 1.17977 1.22644 1.21649 0.95939 0.96991 0.85941 1.21652 0.95193 1.00761 0.95134 1.22538 0.93864 1.04363 0.97865 1.22666 0.97552 0.97376 0.84043 1.87920 1.58573 1.65413 1.18412 1.22510 0.89038 0.97878 0.91933 1.22197 0.97506 1.02656 0.96440 1.02775 0.74391 0.72772 0.72383 1.93728 1.53462 1.61357 1.84145 1.93545 1.86120 1.58845 1.57532 1.57901 1.38142 1.24033 1.63005 1.21267 0.92605 0.95020 0.95351 1.18794 0.95721 0.74173 0.94917 0.92183 1.22142 0.98769 1.03184 0.96756 1.21256 1.50906 0.91305 0.92634 0.91969 1.24892 0.94764 0.97916 0.96141 1.69834 1.49653 1.12793 1.20550 0.86547 0.78751 0.79388 0.82688 1.20091 1.21164 1.20228 0.92661 0.87906 0.92627 0.89887 0.88663 0.90505 0.88396 0.91425 0.93766 0.88785 0.93545 0.89079 0.90917 0.90317 0.92786 0.90742 0.93203 0.97276 0.94702 0.88662 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.21 11.47 101.05 1.16 0.95 16 2 O -0.12 -1.82 11.31 -21.61 -0.24 -2.07 16 3 N -0.87 -14.05 3.20 -10.61 -0.03 -14.08 16 4 C 0.12 1.69 5.39 -4.04 -0.02 1.67 16 5 C -0.11 -1.43 2.48 -90.44 -0.22 -1.65 16 6 C -0.15 -2.32 3.66 -26.59 -0.10 -2.42 16 7 C 0.06 0.82 6.84 37.21 0.25 1.08 16 8 O -0.38 -5.41 10.77 -35.23 -0.38 -5.79 16 9 C 0.06 0.70 6.84 37.21 0.25 0.95 16 10 C -0.15 -1.66 5.42 -26.59 -0.14 -1.81 16 11 S 2.77 54.46 5.41 -107.50 -0.58 53.88 16 12 O -0.94 -20.16 11.34 -57.17 -0.65 -20.81 16 13 O -0.98 -21.10 16.88 -62.61 -1.06 -22.16 16 14 N -0.99 -19.90 3.12 -115.86 -0.36 -20.26 16 15 C 0.10 1.81 9.07 59.84 0.54 2.36 16 16 C 0.27 6.19 2.62 -69.08 -0.18 6.01 16 17 H 0.06 1.52 6.90 -51.93 -0.36 1.16 16 18 C -0.15 -3.18 8.95 37.16 0.33 -2.85 16 19 C -0.52 -13.55 8.37 -34.44 -0.29 -13.84 16 20 H 0.06 1.62 7.64 -52.48 -0.40 1.22 16 21 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 22 N -0.89 -23.90 11.32 55.43 0.63 -23.28 16 23 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 24 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 25 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.68 5.47 -51.93 -0.28 0.40 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.10 1.45 7.79 -51.93 -0.40 1.05 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.10 1.74 7.17 -51.93 -0.37 1.36 16 34 H 0.07 1.16 5.61 -51.93 -0.29 0.87 16 35 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.07 1.23 6.44 -51.93 -0.33 0.89 16 43 H 0.05 0.75 5.70 -51.93 -0.30 0.45 16 44 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 45 H 0.03 0.70 6.67 -51.93 -0.35 0.36 16 46 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 47 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 372.10 15.07 5.61 5.61 Total: -1.00 -30.66 372.10 -8.21 -38.87 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -7.61 Total: 2.37 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 1.49 Total: -7.94 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.23 Total: -57.62 kcal Atomic # 8 Polarization: -48.49 SS G_CDS: -2.33 Total: -50.82 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 54.46 SS G_CDS: -0.58 Total: 53.88 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.66 -8.21 -38.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800982792.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.768 kcal (2) G-P(sol) polarization free energy of solvation -30.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds