Wall clock time and date at job start Sat Apr 11 2020 04:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 N 1.41600 * 114.00053 * 2 1 4 4 C 1.46499 * 119.99646 * 270.00098 * 3 2 1 5 5 C 1.53000 * 109.47135 * 269.99789 * 4 3 2 6 6 C 1.53177 * 109.54355 * 294.56071 * 5 4 3 7 7 C 1.53093 * 109.16564 * 183.15115 * 6 5 4 8 8 O 1.42902 * 109.41344 * 57.60628 * 7 6 5 9 9 C 1.42907 * 114.09769 * 298.83983 * 8 7 6 10 10 C 1.53093 * 109.40924 * 61.16327 * 9 8 7 11 11 S 1.65599 * 120.00016 * 90.00025 * 3 2 1 12 12 O 1.42100 * 106.40241 * 156.45960 * 11 3 2 13 13 O 1.42096 * 106.40379 * 23.53582 * 11 3 2 14 14 N 1.65608 * 107.21718 * 269.99744 * 11 3 2 15 15 C 1.46494 * 119.99583 * 90.00246 * 14 11 3 16 16 C 1.46493 * 119.99916 * 269.72928 * 14 11 3 17 17 H 1.09001 * 109.47343 * 359.97438 * 16 14 11 18 18 C 1.53002 * 109.47467 * 120.00112 * 16 14 11 19 19 C 1.50700 * 109.46798 * 239.99852 * 16 14 11 20 20 H 1.08003 * 120.00301 * 359.97438 * 19 16 14 21 21 C 1.37883 * 120.00019 * 180.02562 * 19 16 14 22 22 N 1.31514 * 119.99724 * 0.02562 * 21 19 16 23 23 Si 1.86801 * 119.99983 * 179.97438 * 21 19 16 24 24 H 1.48498 * 109.46974 * 60.00157 * 23 21 19 25 25 H 1.48499 * 109.46906 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47374 * 300.00295 * 23 21 19 27 27 H 1.08994 * 109.46758 * 60.00091 * 1 2 3 28 28 H 1.09002 * 109.46901 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46900 * 300.00254 * 1 2 3 30 30 H 1.09001 * 109.47517 * 29.99723 * 4 3 2 31 31 H 1.08997 * 109.47269 * 150.00256 * 4 3 2 32 32 H 1.09003 * 109.54378 * 54.82290 * 5 4 3 33 33 H 1.09003 * 109.52065 * 303.05638 * 6 5 4 34 34 H 1.09005 * 109.52732 * 63.24614 * 6 5 4 35 35 H 1.08997 * 109.48112 * 297.62354 * 7 6 5 36 36 H 1.08994 * 109.48242 * 177.59155 * 7 6 5 37 37 H 1.08991 * 109.48089 * 301.18027 * 9 8 7 38 38 H 1.08993 * 109.48867 * 181.14481 * 9 8 7 39 39 H 1.09001 * 109.52090 * 182.48631 * 10 9 8 40 40 H 1.08998 * 109.52823 * 62.29815 * 10 9 8 41 41 H 1.08995 * 109.47693 * 90.00177 * 15 14 11 42 42 H 1.09003 * 109.47006 * 210.00091 * 15 14 11 43 43 H 1.09004 * 109.47665 * 329.99783 * 15 14 11 44 44 H 1.09000 * 109.46462 * 299.99928 * 18 16 14 45 45 H 1.09001 * 109.46975 * 59.99603 * 18 16 14 46 46 H 1.08994 * 109.47439 * 179.97438 * 18 16 14 47 47 H 0.97008 * 119.99813 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 2.3029 1.9627 -1.2688 5 6 3.7244 1.6089 -1.7105 6 6 4.7306 2.1895 -0.7121 7 6 6.1510 1.8986 -1.2034 8 8 6.3251 2.4535 -2.5087 9 6 5.4429 1.9135 -3.4947 10 6 3.9940 2.2051 -3.0954 11 16 2.3418 2.0500 1.4341 12 8 3.3610 3.0005 1.1568 13 8 2.4804 1.0232 2.4065 14 7 0.9964 2.9174 1.8586 15 6 -0.0455 2.2972 2.6808 16 6 0.8511 4.3066 1.4170 17 1 1.7204 4.5924 0.8248 18 6 -0.4132 4.4417 0.5659 19 6 0.7452 5.2077 2.6203 20 1 0.7820 4.7875 3.6145 21 6 0.6002 6.5685 2.4519 22 7 0.5539 7.0799 1.2412 23 14 0.4683 7.6853 3.9434 24 1 1.6952 7.5548 4.7696 25 1 0.3211 9.0936 3.4958 26 1 -0.7157 7.2956 4.7505 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.5939 1.6335 -2.0284 31 1 2.2209 3.0417 -1.1385 32 1 3.8342 0.5252 -1.7523 33 1 4.5858 3.2670 -0.6339 34 1 4.5816 1.7292 0.2647 35 1 6.3085 0.8207 -1.2426 36 1 6.8713 2.3465 -0.5189 37 1 5.5910 0.8359 -3.5639 38 1 5.6530 2.3721 -4.4609 39 1 3.3182 1.7559 -3.8231 40 1 3.8343 3.2829 -3.0654 41 1 0.1735 2.4681 3.7347 42 1 -1.0122 2.7368 2.4347 43 1 -0.0734 1.2254 2.4846 44 1 -0.3366 3.7898 -0.3044 45 1 -1.2823 4.1559 1.1585 46 1 -0.5216 5.4753 0.2377 47 1 0.4515 8.0373 1.1227 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800982792.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:37:36 Heat of formation + Delta-G solvation = -128.559961 kcal Electronic energy + Delta-G solvation = -30424.116645 eV Core-core repulsion = 26349.813422 eV Total energy + Delta-G solvation = -4074.303223 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.160 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.46249 -38.84149 -38.49820 -37.98564 -37.06350 -35.96246 -34.56887 -32.76623 -31.93430 -30.97325 -28.36166 -27.37976 -27.08933 -26.86650 -24.50504 -23.77982 -22.55914 -21.05085 -20.54575 -19.22590 -18.73868 -18.22902 -18.18117 -17.17249 -16.92884 -16.86380 -16.41970 -16.18661 -15.75043 -15.59832 -15.43368 -15.26603 -15.03392 -14.66174 -14.51657 -14.23984 -13.81670 -13.69724 -13.45947 -13.41529 -13.27455 -13.18187 -13.00494 -12.92679 -12.70983 -12.62518 -12.50388 -12.27188 -12.18974 -12.14445 -12.05984 -11.89860 -11.44163 -11.24444 -11.18862 -11.15246 -10.71369 -10.51192 -10.23092 -9.75377 -8.13025 -6.25985 -0.74213 1.32671 1.42650 1.45040 1.51513 2.31832 2.44811 2.79639 3.00320 3.15888 3.39224 3.71486 3.77139 3.88013 3.96740 4.10543 4.27133 4.31182 4.35931 4.42989 4.47488 4.53826 4.58380 4.59606 4.67688 4.71102 4.79649 4.82581 4.85781 4.91674 4.94439 4.99248 5.02122 5.08340 5.10585 5.18081 5.29564 5.53028 5.58811 5.63946 5.83635 5.95373 6.11165 6.28032 6.30158 6.80176 7.42935 8.90778 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.012552 B = 0.004745 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.190095 B = 5898.983804 C = 6939.562509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 O -0.130 6.130 3 N -0.866 5.866 4 C 0.116 3.884 5 C -0.104 4.104 6 C -0.150 4.150 7 C 0.062 3.938 8 O -0.404 6.404 9 C 0.056 3.944 10 C -0.144 4.144 11 S 2.780 3.220 12 O -0.969 6.969 13 O -1.000 7.000 14 N -0.993 5.993 15 C 0.097 3.903 16 C 0.273 3.727 17 H 0.031 0.969 18 C -0.136 4.136 19 C -0.540 4.540 20 H 0.054 0.946 21 C 0.023 3.977 22 N -0.910 5.910 23 Si 0.951 3.049 24 H -0.281 1.281 25 H -0.281 1.281 26 H -0.267 1.267 27 H 0.070 0.930 28 H 0.137 0.863 29 H 0.048 0.952 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.035 0.965 45 H 0.042 0.958 46 H 0.069 0.931 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.026 -13.526 -9.875 16.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 O -0.136 6.136 3 N -0.744 5.744 4 C -0.008 4.008 5 C -0.124 4.124 6 C -0.189 4.189 7 C -0.015 4.015 8 O -0.323 6.323 9 C -0.020 4.020 10 C -0.183 4.183 11 S 2.790 3.210 12 O -0.953 6.953 13 O -0.984 6.984 14 N -0.836 5.836 15 C -0.048 4.048 16 C 0.169 3.831 17 H 0.049 0.951 18 C -0.195 4.195 19 C -0.579 4.579 20 H 0.072 0.928 21 C -0.177 4.177 22 N -0.549 5.549 23 Si 0.777 3.223 24 H -0.206 1.206 25 H -0.206 1.206 26 H -0.192 1.192 27 H 0.089 0.911 28 H 0.154 0.846 29 H 0.067 0.933 30 H 0.134 0.866 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.103 0.897 43 H 0.093 0.907 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.088 0.912 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.995 -13.487 -9.533 16.546 hybrid contribution -0.893 0.866 0.992 1.591 sum 0.102 -12.620 -8.541 15.239 Atomic orbital electron populations 1.23856 0.80705 1.05900 1.02226 1.90585 1.21360 1.05003 1.96694 1.60919 1.72834 1.18535 1.22088 1.21837 0.97408 0.95972 0.85582 1.21656 0.93803 1.01275 0.95669 1.22457 0.96251 1.02268 0.97881 1.22629 0.96143 0.98441 0.84251 1.87894 1.59546 1.66195 1.18710 1.22785 0.88249 0.99135 0.91867 1.22194 0.98528 1.01905 0.95644 1.02146 0.73967 0.72267 0.72621 1.93706 1.54686 1.62321 1.84632 1.93503 1.86427 1.59327 1.59164 1.57790 1.38777 1.23149 1.63910 1.21453 0.92287 0.96499 0.94562 1.18482 0.95386 0.75320 0.93906 0.95078 1.21925 0.97936 1.02165 0.97490 1.21574 1.50829 0.92230 0.93299 0.92771 1.25554 0.94684 0.99142 0.98367 1.69942 1.50169 1.12950 1.21855 0.85725 0.78636 0.77982 0.79989 1.20648 1.20642 1.19198 0.91140 0.84566 0.93340 0.86615 0.90447 0.89392 0.91562 0.93549 0.91870 0.89089 0.91789 0.87042 0.87748 0.91681 0.93649 0.89688 0.90682 0.94559 0.93859 0.91222 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.58 11.47 113.37 1.30 0.72 16 2 O -0.13 -3.59 11.31 -29.08 -0.33 -3.92 16 3 N -0.87 -27.01 3.20 -187.49 -0.60 -27.61 16 4 C 0.12 3.13 5.39 86.38 0.47 3.59 16 5 C -0.10 -2.63 2.48 -10.68 -0.03 -2.66 16 6 C -0.15 -4.81 3.66 30.68 0.11 -4.70 16 7 C 0.06 1.69 6.84 72.01 0.49 2.19 16 8 O -0.40 -11.03 10.77 -148.98 -1.60 -12.63 16 9 C 0.06 1.09 6.84 72.01 0.49 1.59 16 10 C -0.14 -2.90 5.42 30.68 0.17 -2.74 16 11 S 2.78 110.78 5.41 -56.49 -0.31 110.47 16 12 O -0.97 -43.43 11.34 -128.00 -1.45 -44.88 16 13 O -1.00 -43.47 16.88 -122.81 -2.07 -45.55 16 14 N -0.99 -40.14 3.12 -520.47 -1.62 -41.76 16 15 C 0.10 3.32 9.07 127.77 1.16 4.48 16 16 C 0.27 12.86 2.62 44.25 0.12 12.97 16 17 H 0.03 1.65 6.90 -2.39 -0.02 1.64 16 18 C -0.14 -5.73 8.95 71.98 0.64 -5.08 16 19 C -0.54 -28.51 8.37 25.60 0.21 -28.30 16 20 H 0.05 2.87 7.64 -2.91 -0.02 2.85 16 21 C 0.02 1.22 5.30 84.66 0.45 1.67 16 22 N -0.91 -49.61 11.32 21.45 0.24 -49.37 16 23 Si 0.95 42.57 29.54 68.60 2.03 44.59 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 25 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 27 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.14 1.83 8.14 -2.39 -0.02 1.82 16 29 H 0.05 1.05 5.47 -2.39 -0.01 1.04 16 30 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.08 2.38 7.79 -2.39 -0.02 2.36 16 32 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.07 2.51 7.17 -2.39 -0.02 2.49 16 34 H 0.05 1.65 5.61 -2.38 -0.01 1.64 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.10 1.45 8.14 -2.39 -0.02 1.44 16 40 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.08 2.69 6.44 -2.39 -0.02 2.67 16 43 H 0.07 2.15 5.70 -2.38 -0.01 2.14 16 44 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.04 1.71 6.67 -2.39 -0.02 1.69 16 46 H 0.07 3.34 6.07 -2.39 -0.01 3.32 16 47 H 0.27 13.82 8.31 -92.70 -0.77 13.04 16 Total: -1.00 -67.47 372.10 0.82 -66.64 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.96 Total: 20.27 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 5.59 Total: -16.27 kcal Atomic # 7 Polarization: -116.76 SS G_CDS: -1.98 Total: -118.74 kcal Atomic # 8 Polarization: -101.52 SS G_CDS: -5.46 Total: -106.98 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: 110.78 SS G_CDS: -0.31 Total: 110.47 kcal Total: -67.47 0.82 -66.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800982792.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.915 kcal (2) G-P(sol) polarization free energy of solvation -67.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds