Wall clock time and date at job start Sat Apr 11 2020 04:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 N 1.41599 * 113.99877 * 2 1 4 4 C 1.46496 * 120.00174 * 275.09543 * 3 2 1 5 5 C 1.34780 * 119.99694 * 95.09755 * 3 2 1 6 6 O 1.21287 * 119.99819 * 6.27796 * 5 3 2 7 7 C 1.50694 * 119.99859 * 186.27797 * 5 3 2 8 8 H 1.08992 * 109.47387 * 47.17678 * 7 5 3 9 9 C 1.53005 * 109.46924 * 287.17455 * 7 5 3 10 10 N 1.46501 * 109.47117 * 167.18102 * 7 5 3 11 11 C 1.34775 * 120.00170 * 205.00374 * 10 7 5 12 12 O 1.21292 * 119.99728 * 359.97438 * 11 10 7 13 13 C 1.50696 * 120.00308 * 179.97438 * 11 10 7 14 14 C 1.50700 * 109.47177 * 179.97438 * 13 11 10 15 15 C 1.38320 * 119.96700 * 270.01925 * 14 13 11 16 16 C 1.38277 * 120.13950 * 179.97438 * 15 14 13 17 17 C 1.38124 * 120.06727 * 359.77146 * 16 15 14 18 18 C 1.38858 * 119.93159 * 0.50381 * 17 16 15 19 19 O 1.35747 * 120.06909 * 179.74182 * 18 17 16 20 20 C 1.34836 * 117.00049 * 5.64226 * 19 18 17 21 21 H 1.07994 * 119.99744 * 4.88176 * 20 19 18 22 22 C 1.38653 * 119.99798 * 184.88454 * 20 19 18 23 23 N 1.31554 * 119.99982 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00042 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47597 * 90.00234 * 24 22 20 26 26 H 1.48503 * 109.47117 * 210.00111 * 24 22 20 27 27 H 1.48501 * 109.47199 * 329.99665 * 24 22 20 28 28 C 1.38078 * 119.96564 * 89.99979 * 14 13 11 29 29 H 1.08996 * 109.46941 * 304.99197 * 1 2 3 30 30 H 1.08995 * 109.47121 * 64.99863 * 1 2 3 31 31 H 1.09010 * 109.46803 * 184.99396 * 1 2 3 32 32 H 1.09005 * 109.47030 * 269.99750 * 4 3 2 33 33 H 1.08997 * 109.47064 * 30.00292 * 4 3 2 34 34 H 1.09002 * 109.47230 * 150.00297 * 4 3 2 35 35 H 1.08998 * 109.46924 * 54.01587 * 9 7 5 36 36 H 1.08998 * 109.46962 * 174.01076 * 9 7 5 37 37 H 1.08997 * 109.47512 * 294.01428 * 9 7 5 38 38 H 0.96997 * 119.99949 * 24.98850 * 10 7 5 39 39 H 1.08993 * 109.47115 * 59.99443 * 13 11 10 40 40 H 1.09000 * 109.47004 * 299.99532 * 13 11 10 41 41 H 1.08004 * 119.92811 * 359.97438 * 15 14 13 42 42 H 1.07999 * 119.96614 * 180.02562 * 16 15 14 43 43 H 1.08006 * 120.03446 * 180.27076 * 17 16 15 44 44 H 0.96999 * 120.00104 * 180.02562 * 23 22 20 45 45 H 1.08005 * 120.03256 * 0.04338 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.1999 2.0086 -1.2637 5 6 2.3737 1.8670 1.1626 6 8 2.3188 1.2335 2.1955 7 6 2.8543 3.2951 1.1793 8 1 2.1708 3.9153 0.5996 9 6 4.2544 3.3692 0.5665 10 7 2.9000 3.7790 2.5613 11 6 2.8013 5.0985 2.8170 12 8 2.6751 5.8856 1.9028 13 6 2.8477 5.5962 4.2387 14 6 2.7183 7.0976 4.2498 15 6 3.8504 7.8892 4.1795 16 6 3.7358 9.2671 4.1889 17 6 2.4893 9.8574 4.2639 18 6 1.3512 9.0655 4.3404 19 8 0.1251 9.6427 4.4194 20 6 0.0715 10.9848 4.3014 21 1 0.9674 11.5429 4.0729 22 6 -1.1337 11.6483 4.4736 23 7 -1.1859 12.9578 4.3589 24 14 -2.6834 10.6828 4.8682 25 1 -2.8270 10.5573 6.3409 26 1 -3.8639 11.3935 4.3146 27 1 -2.5913 9.3299 4.2627 28 6 1.4697 7.6817 4.3298 29 1 -0.3633 0.5893 0.8419 30 1 -0.3633 0.4343 -0.9313 31 1 -0.3633 -1.0239 0.0895 32 1 3.1835 1.7696 -1.6683 33 1 1.4311 1.7061 -1.9746 34 1 2.1304 3.0822 -1.0882 35 1 4.2427 2.9118 -0.4227 36 1 4.5587 4.4124 0.4808 37 1 4.9591 2.8364 1.2049 38 1 3.0011 3.1496 3.2924 39 1 3.7963 5.3102 4.6929 40 1 2.0266 5.1562 4.8046 41 1 4.8260 7.4299 4.1171 42 1 4.6216 9.8825 4.1335 43 1 2.4002 10.9338 4.2668 44 1 -2.0290 13.4220 4.4797 45 1 0.5861 7.0631 4.3851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863628310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:38:29 Heat of formation + Delta-G solvation = -54.910557 kcal Electronic energy + Delta-G solvation = -28423.165464 eV Core-core repulsion = 24216.611967 eV Total energy + Delta-G solvation = -4206.553497 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.82042 -39.65880 -38.87693 -37.60028 -36.65210 -35.38291 -34.15436 -32.46005 -32.21932 -30.62877 -29.37900 -27.87124 -27.11475 -26.81565 -25.16331 -24.36958 -21.86927 -21.33114 -20.38550 -20.26042 -18.18465 -17.96985 -17.66455 -17.09499 -16.62454 -16.45278 -16.34540 -15.50557 -15.16298 -14.93766 -14.84309 -14.49591 -14.35904 -14.15730 -13.89554 -13.70568 -13.61071 -13.42448 -13.23575 -12.88653 -12.70649 -12.57266 -12.46477 -12.33303 -12.15894 -12.06395 -11.64023 -11.28787 -11.06186 -10.81567 -10.75601 -10.72325 -10.26996 -10.12862 -9.89609 -9.55646 -9.37763 -9.34282 -8.84002 -8.11861 -7.32558 -6.37924 -4.04301 1.20624 1.97079 2.03705 2.32021 2.63059 3.00731 3.24194 3.27415 3.42775 3.73999 3.96831 4.26753 4.45078 4.53980 4.60415 4.68666 4.73272 4.76245 4.80083 4.83633 4.95296 5.03660 5.10213 5.11630 5.15614 5.25958 5.35467 5.40492 5.59578 5.71790 5.75321 5.87544 6.03836 6.15659 6.23579 6.29023 6.56038 6.58006 6.82207 7.13596 7.24829 7.32006 7.35887 7.54559 7.64181 7.84262 8.07971 8.16153 8.97723 9.61058 10.70037 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.014026 B = 0.002416 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.842795 B =11584.598227 C =12793.122207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 O -0.136 6.136 3 N -0.484 5.484 4 C 0.071 3.929 5 C 0.517 3.483 6 O -0.514 6.514 7 C 0.135 3.865 8 H 0.117 0.883 9 C -0.166 4.166 10 N -0.724 5.724 11 C 0.520 3.480 12 O -0.517 6.517 13 C -0.092 4.092 14 C -0.035 4.035 15 C -0.187 4.187 16 C -0.076 4.076 17 C -0.217 4.217 18 C 0.160 3.840 19 O -0.220 6.220 20 C -0.387 4.387 21 H 0.106 0.894 22 C 0.062 3.938 23 N -0.882 5.882 24 Si 0.905 3.095 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.260 1.260 28 C -0.174 4.174 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.410 0.590 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.132 0.868 44 H 0.279 0.721 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.418 -23.775 -9.089 26.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 O -0.138 6.138 3 N -0.265 5.265 4 C -0.070 4.070 5 C 0.305 3.695 6 O -0.387 6.387 7 C 0.026 3.974 8 H 0.135 0.865 9 C -0.224 4.224 10 N -0.381 5.381 11 C 0.307 3.693 12 O -0.391 6.391 13 C -0.132 4.132 14 C -0.036 4.036 15 C -0.206 4.206 16 C -0.095 4.095 17 C -0.236 4.236 18 C 0.108 3.892 19 O -0.125 6.125 20 C -0.463 4.463 21 H 0.123 0.877 22 C -0.140 4.140 23 N -0.520 5.520 24 Si 0.730 3.270 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.184 1.184 28 C -0.193 4.193 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.126 0.874 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.247 0.753 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.128 0.872 43 H 0.150 0.850 44 H 0.089 0.911 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.019 -23.607 -9.158 26.561 hybrid contribution -1.008 -0.500 0.287 1.161 sum 7.012 -24.107 -8.871 26.627 Atomic orbital electron populations 1.23367 0.81432 1.04094 1.01338 1.90690 1.20219 1.06188 1.96735 1.49787 1.59070 1.10386 1.07257 1.22305 1.03196 0.96759 0.84728 1.21152 0.77245 0.88504 0.82574 1.90723 1.52724 1.63393 1.31848 1.20687 0.99865 0.90195 0.86621 0.86530 1.22263 0.94381 1.04627 1.01161 1.45898 1.76629 1.08392 1.07192 1.20822 0.75363 0.81005 0.92148 1.90763 1.46972 1.54669 1.46669 1.20573 1.04890 0.94571 0.93156 1.18640 0.93023 0.91978 0.99963 1.20419 0.96743 0.93608 1.09832 1.20738 0.96508 0.94309 0.97901 1.21306 0.92030 1.01001 1.09271 1.19015 0.85203 0.91679 0.93311 1.83577 1.24677 1.23843 1.80403 1.20757 0.98608 0.77875 1.49043 0.87683 1.24451 0.98502 0.95100 0.95985 1.69647 1.27820 1.06580 1.47940 0.86190 0.80996 0.80666 0.79100 1.19931 1.20826 1.18394 1.19940 0.96662 0.92063 1.10673 0.92599 0.92882 0.87430 0.90742 0.89979 0.89097 0.90782 0.89892 0.91318 0.75303 0.87982 0.88014 0.87672 0.87169 0.84997 0.91127 0.86845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.03 11.45 101.05 1.16 1.13 16 2 O -0.14 -1.33 11.19 -29.57 -0.33 -1.67 16 3 N -0.48 -4.24 3.36 -67.08 -0.23 -4.47 16 4 C 0.07 0.33 9.42 59.84 0.56 0.90 16 5 C 0.52 5.42 7.15 -10.99 -0.08 5.34 16 6 O -0.51 -7.04 16.26 -12.55 -0.20 -7.24 16 7 C 0.14 1.26 2.15 -69.08 -0.15 1.11 16 8 H 0.12 1.10 6.37 -51.93 -0.33 0.77 16 9 C -0.17 -1.22 9.24 37.16 0.34 -0.88 16 10 N -0.72 -7.58 5.02 -54.93 -0.28 -7.85 16 11 C 0.52 6.90 7.79 -10.99 -0.09 6.81 16 12 O -0.52 -8.93 15.70 5.55 0.09 -8.85 16 13 C -0.09 -1.14 5.83 -29.04 -0.17 -1.31 16 14 C -0.04 -0.61 4.37 -104.65 -0.46 -1.06 16 15 C -0.19 -3.20 9.70 -39.54 -0.38 -3.58 16 16 C -0.08 -1.42 10.04 -39.61 -0.40 -1.82 16 17 C -0.22 -4.81 9.14 -39.39 -0.36 -5.17 16 18 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 19 O -0.22 -5.93 8.59 0.04 0.00 -5.93 16 20 C -0.39 -11.11 9.91 30.89 0.31 -10.80 16 21 H 0.11 3.08 5.51 -52.49 -0.29 2.79 16 22 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 23 N -0.88 -25.78 13.96 55.48 0.77 -25.01 16 24 Si 0.90 21.99 28.62 -169.99 -4.86 17.13 16 25 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 27 H -0.26 -6.36 7.11 56.52 0.40 -5.96 16 28 C -0.17 -3.56 9.65 -39.40 -0.38 -3.94 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.11 0.51 8.14 -51.92 -0.42 0.09 16 32 H 0.07 0.25 7.35 -51.93 -0.38 -0.13 16 33 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.09 0.35 5.91 -51.93 -0.31 0.05 16 35 H 0.07 0.38 5.73 -51.93 -0.30 0.08 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.41 3.81 7.71 -40.82 -0.31 3.50 16 39 H 0.10 0.96 8.08 -51.93 -0.42 0.54 16 40 H 0.10 1.08 8.08 -51.93 -0.42 0.66 16 41 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 42 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.13 3.06 5.71 -52.48 -0.30 2.76 16 44 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.11 2.19 8.06 -52.48 -0.42 1.76 16 LS Contribution 383.77 15.07 5.78 5.78 Total: -1.00 -36.20 383.77 -5.70 -41.90 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -6.00 Total: 4.25 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -0.45 Total: -8.06 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.27 Total: -37.32 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.45 Total: -23.68 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.86 Total: 17.13 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.20 -5.70 -41.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863628310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.009 kcal (2) G-P(sol) polarization free energy of solvation -36.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds