Wall clock time and date at job start Sat Apr 11 2020 04:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36027 * 116.99739 * 2 1 4 4 C 1.35498 * 120.48502 * 0.02562 * 3 2 1 5 5 O 1.33833 * 121.01416 * 179.97438 * 4 3 2 6 6 C 1.34291 * 122.04112 * 359.97438 * 5 4 3 7 7 C 1.48047 * 119.56843 * 179.97438 * 6 5 4 8 8 O 1.21522 * 119.99356 * 179.97438 * 7 6 5 9 9 N 1.34776 * 120.00435 * 0.02562 * 7 6 5 10 10 C 1.46496 * 120.00050 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.20493 * 35.64161 * 10 9 7 12 12 C 1.50128 * 109.20702 * 155.00066 * 10 9 7 13 13 C 1.52533 * 105.41053 * 218.02841 * 12 10 9 14 14 C 1.46241 * 114.27656 * 270.58715 * 13 12 10 15 15 N 1.50176 * 107.58252 * 58.38010 * 14 13 12 16 16 C 1.36936 * 120.53176 * 109.60653 * 15 14 13 17 17 H 1.08003 * 119.99544 * 156.71165 * 16 15 14 18 18 C 1.38811 * 120.00255 * 336.70264 * 16 15 14 19 19 N 1.31620 * 120.00265 * 340.43003 * 18 16 15 20 20 Si 1.86800 * 119.99849 * 160.42215 * 18 16 15 21 21 H 1.48497 * 109.47145 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47207 * 120.00386 * 20 18 16 23 23 H 1.48500 * 109.47396 * 240.00361 * 20 18 16 24 24 C 1.43408 * 118.94302 * 289.70480 * 15 14 13 25 25 C 1.54842 * 109.20952 * 276.32402 * 10 9 7 26 26 C 1.35804 * 120.85383 * 0.25918 * 6 5 4 27 27 C 1.42011 * 120.48466 * 179.97438 * 3 2 1 28 28 O 1.22126 * 120.91563 * 0.02562 * 27 3 2 29 29 H 1.08997 * 109.47258 * 299.99991 * 1 2 3 30 30 H 1.09003 * 109.47528 * 60.00159 * 1 2 3 31 31 H 1.09003 * 109.46920 * 179.97438 * 1 2 3 32 32 H 1.08000 * 119.49059 * 359.95496 * 4 3 2 33 33 H 0.96994 * 119.99617 * 359.97438 * 9 7 6 34 34 H 1.08996 * 110.25154 * 99.05814 * 12 10 9 35 35 H 1.08996 * 110.25056 * 336.99977 * 12 10 9 36 36 H 1.09001 * 108.51858 * 149.35090 * 13 12 10 37 37 H 1.08993 * 108.40262 * 31.74848 * 13 12 10 38 38 H 1.08998 * 109.84102 * 177.91690 * 14 13 12 39 39 H 1.08998 * 109.84950 * 298.84027 * 14 13 12 40 40 H 0.96994 * 119.99906 * 179.97438 * 19 18 16 41 41 H 1.08999 * 108.12408 * 329.72527 * 24 15 14 42 42 H 1.08999 * 107.96618 * 213.06882 * 24 15 14 43 43 H 1.08994 * 109.36018 * 320.99679 * 25 10 9 44 44 H 1.09001 * 109.35882 * 80.72074 * 25 10 9 45 45 H 1.08000 * 120.54653 * 179.72293 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 1.3181 2.3546 0.0005 5 8 1.9146 3.5526 0.0010 6 6 3.2511 3.6831 0.0016 7 6 3.8532 5.0356 0.0016 8 8 5.0618 5.1626 0.0025 9 7 3.0610 6.1259 0.0015 10 6 3.6569 7.4642 0.0021 11 1 4.5671 7.4517 -0.5974 12 6 2.6841 8.4382 -0.5972 13 6 3.5319 9.4044 -1.4184 14 6 4.0107 10.5675 -0.6724 15 7 4.8172 10.0612 0.4889 16 6 6.1766 10.2234 0.5151 17 1 6.7032 10.2162 1.4580 18 6 6.8780 10.3969 -0.6702 19 7 6.3382 10.0318 -1.8138 20 14 8.5877 11.1488 -0.6423 21 1 8.9641 11.4708 0.7576 22 1 9.5631 10.1817 -1.2067 23 1 8.5955 12.3912 -1.4556 24 6 4.1412 9.4031 1.5689 25 6 4.0107 7.8638 1.4556 26 6 4.0575 2.5904 -0.0037 27 6 3.4639 1.2984 0.0005 28 8 4.1540 0.2908 0.0006 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2396 2.2976 0.0002 33 1 2.0964 6.0245 0.0011 34 1 2.1552 8.9757 0.1898 35 1 1.9762 7.9165 -1.2411 36 1 2.9378 9.7549 -2.2624 37 1 4.3945 8.8620 -1.8052 38 1 4.6359 11.1874 -1.3149 39 1 3.1631 11.1486 -0.3089 40 1 6.8282 10.1534 -2.6420 41 1 3.1389 9.8241 1.6483 42 1 4.6772 9.6317 2.4901 43 1 3.2250 7.5174 2.1270 44 1 4.9566 7.4013 1.7374 45 1 5.1318 2.7010 -0.0077 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052563243.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:38:54 Heat of formation + Delta-G solvation = -58.594445 kcal Electronic energy + Delta-G solvation = -29535.340264 eV Core-core repulsion = 25328.627022 eV Total energy + Delta-G solvation = -4206.713242 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.156 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.39732 -39.99167 -39.36520 -38.39200 -37.81030 -34.90651 -32.80702 -32.53865 -31.70939 -31.54659 -29.94888 -28.27311 -26.42198 -25.34991 -24.22980 -24.02205 -22.97189 -21.14335 -20.22791 -19.33367 -19.21743 -18.97666 -17.97176 -17.12806 -16.77440 -16.32251 -15.91444 -15.72694 -15.39928 -15.13307 -15.09128 -14.72746 -14.59791 -14.24240 -14.21299 -13.87721 -13.79544 -13.24913 -13.00589 -12.57783 -12.31560 -11.99714 -11.97598 -11.88168 -11.56077 -11.28679 -10.86090 -10.75254 -10.52014 -10.39776 -10.24017 -10.13419 -9.99355 -9.88281 -9.77242 -9.56101 -9.40139 -8.81860 -8.61531 -8.42350 -6.73973 -5.79846 -3.18702 0.18554 0.63072 1.78714 2.61624 2.65140 3.02707 3.22683 3.39636 3.48761 3.50209 3.85696 4.05240 4.36367 4.52316 4.54137 4.61336 4.83109 4.95284 5.01355 5.19083 5.28139 5.35779 5.45862 5.60669 5.72218 5.75227 5.91805 6.15117 6.18951 6.31992 6.36984 6.51584 6.56993 6.61366 6.71027 6.81967 6.87205 6.90640 6.98931 7.15046 7.35963 7.51349 7.55691 7.73997 7.93610 8.06542 8.42034 9.18493 9.85835 10.37372 11.27964 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.020547 B = 0.002642 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.395062 B =10595.766272 C =11342.863877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.283 6.283 3 C -0.052 4.052 4 C -0.006 4.006 5 O -0.196 6.196 6 C 0.097 3.903 7 C 0.566 3.434 8 O -0.488 6.488 9 N -0.704 5.704 10 C 0.151 3.849 11 H 0.108 0.892 12 C -0.122 4.122 13 C -0.130 4.130 14 C 0.164 3.836 15 N -0.588 5.588 16 C -0.249 4.249 17 H 0.068 0.932 18 C 0.003 3.997 19 N -0.900 5.900 20 Si 0.900 3.100 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.162 3.838 25 C -0.153 4.153 26 C -0.233 4.233 27 C 0.408 3.592 28 O -0.459 6.459 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.202 0.798 33 H 0.400 0.600 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.032 0.968 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.007 0.993 40 H 0.252 0.748 41 H 0.030 0.970 42 H 0.036 0.964 43 H 0.047 0.953 44 H 0.059 0.941 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.709 -12.371 2.582 21.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.196 6.196 3 C -0.100 4.100 4 C -0.071 4.071 5 O -0.099 6.099 6 C 0.045 3.955 7 C 0.347 3.653 8 O -0.363 6.363 9 N -0.354 5.354 10 C 0.049 3.951 11 H 0.126 0.874 12 C -0.160 4.160 13 C -0.169 4.169 14 C 0.041 3.959 15 N -0.310 5.310 16 C -0.378 4.378 17 H 0.086 0.914 18 C -0.195 4.195 19 N -0.545 5.545 20 Si 0.730 3.270 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.032 3.968 25 C -0.195 4.195 26 C -0.254 4.254 27 C 0.295 3.705 28 O -0.342 6.342 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.126 0.874 32 H 0.219 0.781 33 H 0.234 0.766 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.121 0.879 38 H 0.109 0.891 39 H 0.025 0.975 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.054 0.946 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -16.435 -12.688 2.421 20.904 hybrid contribution 0.039 -0.034 -0.106 0.118 sum -16.396 -12.723 2.314 20.882 Atomic orbital electron populations 1.23231 0.78491 1.05065 1.01337 1.86296 1.20888 1.23732 1.88731 1.21056 0.95399 0.85998 1.07526 1.23899 0.98153 0.81216 1.03879 1.82914 1.20420 1.30737 1.75820 1.22802 0.79855 0.96798 0.96020 1.17423 0.86822 0.81929 0.79112 1.90964 1.12542 1.84184 1.48581 1.46549 1.09889 1.06771 1.72217 1.21523 0.97770 0.77235 0.98530 0.87391 1.21380 0.97292 0.97649 0.99635 1.20938 0.99654 0.99023 0.97281 1.20174 0.92326 0.94267 0.89179 1.44300 1.03638 1.62559 1.20467 1.19238 0.82627 1.43629 0.92341 0.91415 1.24886 0.97667 1.00976 0.95935 1.69950 1.37978 1.48981 0.97591 0.86258 0.84478 0.78790 0.77455 1.20424 1.21848 1.21708 1.20359 0.95310 0.88904 0.92258 1.23346 1.00337 1.01541 0.94295 1.23179 1.03921 0.90835 1.07498 1.17111 0.86197 0.89880 0.77330 1.90846 1.65124 1.37968 1.40252 0.92311 0.92304 0.87427 0.78132 0.76572 0.91575 0.92616 0.94958 0.87857 0.89056 0.97498 0.93775 0.95209 0.94621 0.93420 0.92241 0.80302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.82 101.05 0.99 1.06 16 2 O -0.28 -2.95 10.35 -35.07 -0.36 -3.31 16 3 C -0.05 -0.57 6.72 -39.12 -0.26 -0.83 16 4 C -0.01 -0.04 10.43 29.75 0.31 0.27 16 5 O -0.20 -1.81 9.06 6.99 0.06 -1.75 16 6 C 0.10 1.18 6.90 -36.43 -0.25 0.93 16 7 C 0.57 8.58 7.75 -12.24 -0.09 8.49 16 8 O -0.49 -9.56 15.92 5.35 0.09 -9.48 16 9 N -0.70 -9.69 4.97 -55.14 -0.27 -9.96 16 10 C 0.15 2.62 2.22 -68.39 -0.15 2.47 16 11 H 0.11 2.44 6.26 -51.93 -0.33 2.11 16 12 C -0.12 -1.92 5.34 -28.40 -0.15 -2.07 16 13 C -0.13 -2.55 5.02 -30.18 -0.15 -2.70 16 14 C 0.16 3.57 5.24 -5.20 -0.03 3.55 16 15 N -0.59 -13.70 2.61 -175.09 -0.46 -14.15 16 16 C -0.25 -6.55 9.62 -15.06 -0.14 -6.70 16 17 H 0.07 1.80 7.88 -52.48 -0.41 1.39 16 18 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 19 N -0.90 -24.34 9.43 55.49 0.52 -23.82 16 20 Si 0.90 21.47 29.60 -169.99 -5.03 16.44 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 C 0.16 3.17 5.17 -4.67 -0.02 3.15 16 25 C -0.15 -2.74 5.98 -24.76 -0.15 -2.88 16 26 C -0.23 -3.10 9.56 -38.94 -0.37 -3.47 16 27 C 0.41 5.73 6.82 -36.63 -0.25 5.48 16 28 O -0.46 -8.02 17.74 -10.44 -0.19 -8.20 16 29 H 0.06 0.17 7.67 -51.93 -0.40 -0.23 16 30 H 0.06 0.17 7.67 -51.93 -0.40 -0.23 16 31 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.20 0.64 6.22 -52.49 -0.33 0.31 16 33 H 0.40 4.13 7.88 -40.82 -0.32 3.81 16 34 H 0.07 1.00 6.29 -51.93 -0.33 0.67 16 35 H 0.06 0.74 7.85 -51.93 -0.41 0.34 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.10 2.43 5.29 -51.93 -0.27 2.16 16 38 H 0.09 2.26 6.05 -51.93 -0.31 1.95 16 39 H 0.01 0.14 8.13 -51.93 -0.42 -0.28 16 40 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 41 H 0.03 0.53 6.89 -51.93 -0.36 0.17 16 42 H 0.04 0.71 7.98 -51.93 -0.41 0.30 16 43 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.18 2.50 7.56 -52.49 -0.40 2.11 16 LS Contribution 362.96 15.07 5.47 5.47 Total: -1.00 -32.47 362.96 -6.90 -39.38 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.92 Total: 2.66 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -0.81 Total: 6.73 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -0.21 Total: -47.93 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.40 Total: -22.74 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.47 -6.90 -39.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052563243.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.219 kcal (2) G-P(sol) polarization free energy of solvation -32.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds