Wall clock time and date at job start Sat Apr 11 2020 04:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36027 * 116.99739 * 2 1 4 4 C 1.35498 * 120.48502 * 0.02562 * 3 2 1 5 5 O 1.33833 * 121.01416 * 179.97438 * 4 3 2 6 6 C 1.34291 * 122.04112 * 359.97438 * 5 4 3 7 7 C 1.48047 * 119.56843 * 179.97438 * 6 5 4 8 8 O 1.21522 * 119.99356 * 179.97438 * 7 6 5 9 9 N 1.34776 * 120.00435 * 0.02562 * 7 6 5 10 10 C 1.46496 * 120.00050 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.20493 * 35.64161 * 10 9 7 12 12 C 1.50128 * 109.20702 * 155.00066 * 10 9 7 13 13 C 1.52533 * 105.41053 * 218.02841 * 12 10 9 14 14 C 1.46241 * 114.27656 * 270.58715 * 13 12 10 15 15 N 1.50176 * 107.58252 * 58.38010 * 14 13 12 16 16 C 1.36936 * 120.53176 * 109.60653 * 15 14 13 17 17 H 1.08003 * 119.99544 * 156.71165 * 16 15 14 18 18 C 1.38811 * 120.00255 * 336.70264 * 16 15 14 19 19 N 1.31620 * 120.00265 * 340.43003 * 18 16 15 20 20 Si 1.86800 * 119.99849 * 160.42215 * 18 16 15 21 21 H 1.48497 * 109.47145 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47207 * 120.00386 * 20 18 16 23 23 H 1.48500 * 109.47396 * 240.00361 * 20 18 16 24 24 C 1.43408 * 118.94302 * 289.70480 * 15 14 13 25 25 C 1.54842 * 109.20952 * 276.32402 * 10 9 7 26 26 C 1.35804 * 120.85383 * 0.25918 * 6 5 4 27 27 C 1.42011 * 120.48466 * 179.97438 * 3 2 1 28 28 O 1.22126 * 120.91563 * 0.02562 * 27 3 2 29 29 H 1.08997 * 109.47258 * 299.99991 * 1 2 3 30 30 H 1.09003 * 109.47528 * 60.00159 * 1 2 3 31 31 H 1.09003 * 109.46920 * 179.97438 * 1 2 3 32 32 H 1.08000 * 119.49059 * 359.95496 * 4 3 2 33 33 H 0.96994 * 119.99617 * 359.97438 * 9 7 6 34 34 H 1.08996 * 110.25154 * 99.05814 * 12 10 9 35 35 H 1.08996 * 110.25056 * 336.99977 * 12 10 9 36 36 H 1.09001 * 108.51858 * 149.35090 * 13 12 10 37 37 H 1.08993 * 108.40262 * 31.74848 * 13 12 10 38 38 H 1.08998 * 109.84102 * 177.91690 * 14 13 12 39 39 H 1.08998 * 109.84950 * 298.84027 * 14 13 12 40 40 H 0.96994 * 119.99906 * 179.97438 * 19 18 16 41 41 H 1.08999 * 108.12408 * 329.72527 * 24 15 14 42 42 H 1.08999 * 107.96618 * 213.06882 * 24 15 14 43 43 H 1.08994 * 109.36018 * 320.99679 * 25 10 9 44 44 H 1.09001 * 109.35882 * 80.72074 * 25 10 9 45 45 H 1.08000 * 120.54653 * 179.72293 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 1.3181 2.3546 0.0005 5 8 1.9146 3.5526 0.0010 6 6 3.2511 3.6831 0.0016 7 6 3.8532 5.0356 0.0016 8 8 5.0618 5.1626 0.0025 9 7 3.0610 6.1259 0.0015 10 6 3.6569 7.4642 0.0021 11 1 4.5671 7.4517 -0.5974 12 6 2.6841 8.4382 -0.5972 13 6 3.5319 9.4044 -1.4184 14 6 4.0107 10.5675 -0.6724 15 7 4.8172 10.0612 0.4889 16 6 6.1766 10.2234 0.5151 17 1 6.7032 10.2162 1.4580 18 6 6.8780 10.3969 -0.6702 19 7 6.3382 10.0318 -1.8138 20 14 8.5877 11.1488 -0.6423 21 1 8.9641 11.4708 0.7576 22 1 9.5631 10.1817 -1.2067 23 1 8.5955 12.3912 -1.4556 24 6 4.1412 9.4031 1.5689 25 6 4.0107 7.8638 1.4556 26 6 4.0575 2.5904 -0.0037 27 6 3.4639 1.2984 0.0005 28 8 4.1540 0.2908 0.0006 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2396 2.2976 0.0002 33 1 2.0964 6.0245 0.0011 34 1 2.1552 8.9757 0.1898 35 1 1.9762 7.9165 -1.2411 36 1 2.9378 9.7549 -2.2624 37 1 4.3945 8.8620 -1.8052 38 1 4.6359 11.1874 -1.3149 39 1 3.1631 11.1486 -0.3089 40 1 6.8282 10.1534 -2.6420 41 1 3.1389 9.8241 1.6483 42 1 4.6772 9.6317 2.4901 43 1 3.2250 7.5174 2.1270 44 1 4.9566 7.4013 1.7374 45 1 5.1318 2.7010 -0.0077 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052563243.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:38:53 Heat of formation + Delta-G solvation = -81.376532 kcal Electronic energy + Delta-G solvation = -29536.328169 eV Core-core repulsion = 25328.627022 eV Total energy + Delta-G solvation = -4207.701147 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.32239 -41.19277 -40.29068 -39.40894 -39.21243 -36.44597 -34.14857 -33.87569 -33.28374 -32.65596 -31.47536 -28.70784 -28.06266 -26.55547 -25.65057 -25.04397 -24.50074 -22.43196 -21.71589 -20.82814 -20.12262 -19.89916 -19.01083 -18.56786 -17.99282 -17.30064 -17.12691 -16.92769 -16.56191 -16.36500 -16.06963 -15.97532 -15.68931 -15.53379 -15.41158 -15.26535 -15.14377 -14.97901 -14.11461 -13.90829 -13.77107 -13.48145 -13.20775 -13.12524 -12.71672 -12.45825 -12.44450 -12.33555 -12.19689 -11.99099 -11.78899 -11.63426 -11.41454 -11.16838 -11.09033 -11.07122 -10.96704 -10.42899 -10.11092 -9.43623 -8.61147 -7.81060 -5.20022 -0.87587 -0.19338 0.82824 1.45187 1.49525 1.49866 1.57137 1.81638 2.02421 2.19672 2.55813 3.18329 3.20828 3.31677 3.34208 3.66111 3.81119 4.03822 4.10346 4.20247 4.24985 4.32508 4.35177 4.41736 4.52450 4.67091 4.74795 4.75922 4.79061 4.88582 4.94185 5.06323 5.21005 5.25482 5.33706 5.39835 5.50592 5.59585 5.69124 5.71083 5.81763 5.96671 6.25301 6.33179 6.44505 6.46152 6.93859 7.22687 7.96726 8.43298 9.22883 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.020547 B = 0.002642 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.395062 B =10595.766272 C =11342.863877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.314 6.314 3 C -0.074 4.074 4 C 0.038 3.962 5 O -0.175 6.175 6 C 0.118 3.882 7 C 0.566 3.434 8 O -0.541 6.541 9 N -0.683 5.683 10 C 0.163 3.837 11 H 0.050 0.950 12 C -0.106 4.106 13 C -0.125 4.125 14 C 0.165 3.835 15 N -0.603 5.603 16 C -0.256 4.256 17 H 0.057 0.943 18 C -0.043 4.043 19 N -0.913 5.913 20 Si 0.950 3.050 21 H -0.274 1.274 22 H -0.302 1.302 23 H -0.288 1.288 24 C 0.155 3.845 25 C -0.143 4.143 26 C -0.244 4.244 27 C 0.397 3.603 28 O -0.518 6.518 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.117 0.883 32 H 0.262 0.738 33 H 0.423 0.577 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.048 0.952 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.034 0.966 40 H 0.245 0.755 41 H 0.063 0.937 42 H 0.027 0.973 43 H 0.087 0.913 44 H 0.022 0.978 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.585 -12.178 3.292 25.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.229 6.229 3 C -0.121 4.121 4 C -0.027 4.027 5 O -0.076 6.076 6 C 0.066 3.934 7 C 0.349 3.651 8 O -0.419 6.419 9 N -0.335 5.335 10 C 0.059 3.941 11 H 0.068 0.932 12 C -0.144 4.144 13 C -0.164 4.164 14 C 0.042 3.958 15 N -0.325 5.325 16 C -0.387 4.387 17 H 0.075 0.925 18 C -0.239 4.239 19 N -0.559 5.559 20 Si 0.781 3.219 21 H -0.199 1.199 22 H -0.230 1.230 23 H -0.215 1.215 24 C 0.027 3.973 25 C -0.185 4.185 26 C -0.266 4.266 27 C 0.289 3.711 28 O -0.406 6.406 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.136 0.864 32 H 0.277 0.723 33 H 0.262 0.738 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.081 0.919 42 H 0.045 0.955 43 H 0.105 0.895 44 H 0.041 0.959 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -21.402 -12.473 3.150 24.971 hybrid contribution 1.413 -0.072 -0.294 1.445 sum -19.989 -12.545 2.856 23.772 Atomic orbital electron populations 1.23650 0.75437 1.06754 1.03534 1.86266 1.24023 1.23548 1.89069 1.20688 0.93902 0.87645 1.09890 1.24826 0.99711 0.79092 0.99112 1.82958 1.18326 1.31871 1.74403 1.22006 0.81077 0.94570 0.95777 1.17663 0.86264 0.83037 0.78090 1.90957 1.15081 1.85175 1.50713 1.46227 1.10901 1.05150 1.71213 1.21079 0.96481 0.79276 0.97232 0.93184 1.21293 0.96653 0.96356 1.00095 1.20751 0.98968 0.98543 0.98154 1.20136 0.92148 0.94941 0.88551 1.44456 1.02855 1.63531 1.21661 1.19375 0.84498 1.43001 0.91813 0.92513 1.25457 1.00339 1.02068 0.96043 1.70115 1.38558 1.49778 0.97494 0.85464 0.81346 0.77752 0.77376 1.19879 1.22979 1.21501 1.20510 0.96410 0.89884 0.90544 1.23211 0.99883 0.99938 0.95498 1.23045 1.03488 0.91535 1.08572 1.17501 0.88161 0.89119 0.76340 1.90813 1.66567 1.39227 1.43960 0.89884 0.89965 0.86431 0.72264 0.73782 0.89310 0.89043 0.93377 0.92234 0.92793 0.94752 0.94559 0.91903 0.95494 0.89486 0.95932 0.82285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.82 113.37 1.11 1.11 16 2 O -0.31 -5.92 10.35 -79.29 -0.82 -6.75 16 3 C -0.07 -1.45 6.72 22.57 0.15 -1.29 16 4 C 0.04 0.39 10.43 67.19 0.70 1.09 16 5 O -0.17 -2.42 9.06 2.08 0.02 -2.40 16 6 C 0.12 2.71 6.90 24.31 0.17 2.88 16 7 C 0.57 16.81 7.75 86.85 0.67 17.48 16 8 O -0.54 -22.24 15.92 -3.78 -0.06 -22.30 16 9 N -0.68 -16.96 4.97 -446.65 -2.22 -19.17 16 10 C 0.16 5.40 2.22 44.70 0.10 5.50 16 11 H 0.05 2.33 6.26 -2.39 -0.01 2.31 16 12 C -0.11 -2.97 5.34 29.51 0.16 -2.81 16 13 C -0.12 -4.76 5.02 28.36 0.14 -4.62 16 14 C 0.17 7.09 5.24 83.58 0.44 7.53 16 15 N -0.60 -28.05 2.61 -707.88 -1.85 -29.89 16 16 C -0.26 -13.85 9.62 84.03 0.81 -13.04 16 17 H 0.06 3.12 7.88 -2.91 -0.02 3.09 16 18 C -0.04 -2.37 4.91 84.86 0.42 -1.95 16 19 N -0.91 -51.39 9.43 21.65 0.20 -51.19 16 20 Si 0.95 45.56 29.60 68.60 2.03 47.59 16 21 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.30 -14.89 7.11 99.48 0.71 -14.19 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 24 C 0.16 5.84 5.17 87.60 0.45 6.29 16 25 C -0.14 -4.91 5.98 31.87 0.19 -4.72 16 26 C -0.24 -6.73 9.56 22.68 0.22 -6.51 16 27 C 0.40 11.43 6.82 24.18 0.16 11.59 16 28 O -0.52 -19.38 17.74 8.84 0.16 -19.23 16 29 H 0.08 0.02 7.67 -2.39 -0.02 0.01 16 30 H 0.08 0.04 7.67 -2.39 -0.02 0.02 16 31 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.26 -0.42 6.22 -2.91 -0.02 -0.43 16 33 H 0.42 6.54 7.88 -92.71 -0.73 5.81 16 34 H 0.09 2.16 6.29 -2.39 -0.02 2.14 16 35 H 0.09 1.94 7.85 -2.39 -0.02 1.92 16 36 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.06 2.86 5.29 -2.39 -0.01 2.85 16 38 H 0.05 2.72 6.05 -2.39 -0.01 2.70 16 39 H 0.03 1.28 8.13 -2.39 -0.02 1.26 16 40 H 0.24 13.63 8.31 -92.71 -0.77 12.86 16 41 H 0.06 1.96 6.89 -2.39 -0.02 1.94 16 42 H 0.03 1.05 7.98 -2.39 -0.02 1.03 16 43 H 0.09 2.29 8.12 -2.39 -0.02 2.27 16 44 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.16 4.95 7.56 -2.91 -0.02 4.93 16 Total: -1.00 -80.01 362.96 3.67 -76.34 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 0.31 Total: 8.47 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: 5.89 Total: 18.53 kcal Atomic # 7 Polarization: -96.39 SS G_CDS: -3.86 Total: -100.26 kcal Atomic # 8 Polarization: -49.97 SS G_CDS: -0.71 Total: -50.67 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -80.01 3.67 -76.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052563243.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.035 kcal (2) G-P(sol) polarization free energy of solvation -80.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds