Wall clock time and date at job start Sat Apr 11 2020 04:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46496 * 119.99759 * 2 1 4 4 C 1.52998 * 109.47337 * 89.99861 * 3 2 1 5 5 H 1.09005 * 109.47192 * 304.99494 * 4 3 2 6 6 O 1.42895 * 109.47444 * 65.00012 * 4 3 2 7 7 C 1.53005 * 109.47301 * 185.00099 * 4 3 2 8 8 N 1.46492 * 109.47268 * 179.97438 * 7 4 3 9 9 C 1.36943 * 120.00300 * 179.97438 * 8 7 4 10 10 H 1.08005 * 119.99407 * 359.97438 * 9 8 7 11 11 C 1.38803 * 120.00375 * 180.02562 * 9 8 7 12 12 N 1.31624 * 120.00072 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00170 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46918 * 60.00141 * 13 11 9 15 15 H 1.48505 * 109.47259 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47534 * 300.00217 * 13 11 9 17 17 C 1.34771 * 120.00084 * 179.97438 * 2 1 3 18 18 O 1.21283 * 120.00062 * 180.02562 * 17 2 1 19 19 C 1.50700 * 120.00216 * 0.02562 * 17 2 1 20 20 C 1.54893 * 129.09145 * 299.94144 * 19 17 2 21 21 C 1.57159 * 77.91618 * 180.16186 * 20 19 17 22 22 C 1.53010 * 129.24954 * 179.19619 * 21 20 19 23 23 F 1.39897 * 109.46963 * 301.28320 * 22 21 20 24 24 F 1.39893 * 109.47143 * 61.28086 * 22 21 20 25 25 F 1.39898 * 109.46914 * 181.28584 * 22 21 20 26 26 C 1.54407 * 129.01502 * 180.02562 * 19 17 2 27 27 C 1.54892 * 129.08735 * 60.06357 * 19 17 2 28 28 H 1.09001 * 109.47060 * 90.00688 * 1 2 3 29 29 H 1.09004 * 109.47073 * 210.00177 * 1 2 3 30 30 H 1.09000 * 109.47212 * 330.00260 * 1 2 3 31 31 H 1.09001 * 109.47057 * 210.00204 * 3 2 1 32 32 H 1.08999 * 109.47333 * 329.99764 * 3 2 1 33 33 H 0.96698 * 114.00049 * 59.99977 * 6 4 3 34 34 H 1.09005 * 109.47016 * 299.99939 * 7 4 3 35 35 H 1.08998 * 109.47336 * 59.99708 * 7 4 3 36 36 H 0.97004 * 120.00262 * 359.97438 * 8 7 4 37 37 H 0.96998 * 119.99944 * 180.02562 * 12 11 9 38 38 H 1.08998 * 114.97433 * 291.95782 * 20 19 17 39 39 H 1.09003 * 114.97556 * 67.12436 * 20 19 17 40 40 H 1.09000 * 114.93434 * 293.12963 * 26 19 17 41 41 H 1.09005 * 114.93612 * 68.09599 * 26 19 17 42 42 H 1.09002 * 114.97476 * 292.86544 * 27 19 17 43 43 H 1.08993 * 114.97822 * 68.04342 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 1.4425 5 1 1.5061 1.7551 1.9815 6 8 3.3209 0.7727 2.0814 7 6 3.1059 3.0939 1.4443 8 7 3.3495 3.5172 2.8254 9 6 3.9314 4.7310 3.0772 10 1 4.2110 5.3761 2.2573 11 6 4.1626 5.1318 4.3858 12 7 3.8232 4.3449 5.3848 13 14 4.9570 6.7872 4.7291 14 1 4.1091 7.8691 4.1671 15 1 5.0925 6.9766 6.1958 16 1 6.3002 6.8324 4.0974 17 6 2.1389 -1.1671 0.0005 18 8 3.3518 -1.1671 0.0010 19 6 1.3855 -2.4723 0.0005 20 6 0.3771 -3.0179 1.0420 21 6 0.4174 -4.1789 -0.0165 22 6 -0.3275 -5.5154 -0.0164 23 9 0.0068 -6.2354 1.1355 24 9 -1.7065 -5.2806 -0.0358 25 9 0.0362 -6.2520 -1.1488 26 6 1.9385 -3.9139 0.0016 27 6 0.3780 -3.0184 -1.0416 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 3.1499 1.1384 -0.5139 32 1 1.6084 2.0284 -0.5139 33 1 4.1836 0.6813 1.6543 34 1 4.0523 3.0495 0.9052 35 1 2.4435 3.8093 0.9569 36 1 3.0987 2.9376 3.5617 37 1 3.9845 4.6252 6.2993 38 1 0.8077 -3.2704 2.0110 39 1 -0.5613 -2.4671 1.1065 40 1 2.4663 -4.2043 -0.9068 41 1 2.4467 -4.2105 0.9192 42 1 -0.5603 -2.4676 -1.1071 43 1 0.8093 -3.2713 -2.0101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677137921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:38:43 Heat of formation + Delta-G solvation = -115.399451 kcal Electronic energy + Delta-G solvation = -29617.358067 eV Core-core repulsion = 24866.324835 eV Total energy + Delta-G solvation = -4751.033232 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.45255 -48.00143 -47.98863 -42.70605 -39.49588 -37.21920 -35.36782 -33.96822 -31.32972 -29.82068 -28.48497 -27.20690 -26.47605 -26.28773 -25.92288 -23.92848 -22.43788 -21.16807 -20.45129 -18.89211 -18.77713 -18.76010 -17.80943 -17.15150 -16.79359 -16.24683 -15.79567 -15.16380 -15.10009 -15.08737 -14.90673 -14.75876 -14.61361 -14.42035 -14.41804 -14.14597 -14.14480 -13.81744 -13.65577 -13.20248 -12.97581 -12.68765 -12.45285 -12.32760 -12.11383 -12.03333 -12.02517 -11.77537 -11.50123 -10.95562 -10.92355 -10.89680 -10.80007 -10.66853 -10.18166 -10.01750 -9.77129 -9.62152 -8.88578 -8.59083 -6.91404 -5.73962 -3.03618 2.16231 2.27118 2.73086 2.99929 3.10506 3.33693 3.44594 3.48679 3.50201 3.61706 3.81637 3.98867 4.18606 4.21833 4.27305 4.57689 4.74202 4.83974 4.94892 4.97028 4.99203 5.10923 5.18222 5.28065 5.31717 5.33653 5.36759 5.45545 5.51455 5.53583 5.63530 5.70843 5.98705 6.22436 6.36883 6.51518 6.72923 7.19370 7.68773 8.03355 8.19531 8.44458 9.55557 10.13654 10.49321 11.48328 Molecular weight = 336.14amu Principal moments of inertia in cm(-1) A = 0.028165 B = 0.002112 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.897142 B =13255.381775 C =13501.535890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.602 5.602 3 C 0.085 3.915 4 C 0.086 3.914 5 H 0.095 0.905 6 O -0.547 6.547 7 C 0.126 3.874 8 N -0.725 5.725 9 C -0.244 4.244 10 H 0.069 0.931 11 C -0.013 4.013 12 N -0.930 5.930 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.581 3.419 18 O -0.519 6.519 19 C -0.146 4.146 20 C -0.075 4.075 21 C -0.225 4.225 22 C 0.523 3.477 23 F -0.174 7.174 24 F -0.176 7.176 25 F -0.176 7.176 26 C -0.064 4.064 27 C -0.073 4.073 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.374 0.626 34 H 0.021 0.979 35 H 0.024 0.976 36 H 0.389 0.611 37 H 0.256 0.744 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.338 -19.720 -15.947 28.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.334 5.334 3 C -0.038 4.038 4 C 0.025 3.975 5 H 0.113 0.887 6 O -0.351 6.351 7 C -0.003 4.003 8 N -0.370 5.370 9 C -0.375 4.375 10 H 0.087 0.913 11 C -0.209 4.209 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 C 0.368 3.632 18 O -0.394 6.394 19 C -0.149 4.149 20 C -0.112 4.112 21 C -0.227 4.227 22 C 0.469 3.531 23 F -0.156 7.156 24 F -0.158 7.158 25 F -0.158 7.158 26 C -0.101 4.101 27 C -0.111 4.111 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.222 0.778 34 H 0.038 0.962 35 H 0.042 0.958 36 H 0.223 0.777 37 H 0.066 0.934 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.137 -19.640 -15.557 27.840 hybrid contribution 0.469 0.609 0.102 0.775 sum -11.668 -19.031 -15.456 27.151 Atomic orbital electron populations 1.22044 0.79554 1.03970 1.01849 1.47551 1.06902 1.05693 1.73262 1.22329 0.98318 0.84192 0.98947 1.22483 0.94575 0.89158 0.91254 0.88715 1.86546 1.29190 1.62415 1.56997 1.21230 0.97016 0.92329 0.89756 1.42233 1.73833 1.20147 1.00781 1.19172 1.32303 0.94217 0.91782 0.91336 1.24763 1.01952 0.98597 0.95595 1.69674 1.52963 1.36912 0.98268 0.86258 0.79239 0.83695 0.76901 1.21291 1.21660 1.21256 1.18257 0.86530 0.82402 0.76060 1.90709 1.13262 1.86664 1.48719 1.23652 0.97552 0.94218 0.99502 1.24610 0.98808 0.91254 0.96539 1.25353 1.00880 0.92425 1.03998 1.18394 0.76840 0.84287 0.73592 1.93213 1.92230 1.79850 1.50281 1.93201 1.31829 1.94556 1.96169 1.93203 1.91517 1.79117 1.51928 1.23684 0.90718 0.91382 1.04348 1.24068 0.98960 0.91607 0.96456 0.92422 0.90727 0.90422 0.89291 0.89389 0.77820 0.96164 0.95816 0.77652 0.93441 0.88580 0.88579 0.89062 0.88796 0.88761 0.89147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 9.64 59.85 0.58 1.07 16 2 N -0.60 -6.50 2.86 -181.57 -0.52 -7.02 16 3 C 0.09 1.03 5.11 -4.04 -0.02 1.01 16 4 C 0.09 1.38 3.30 -26.73 -0.09 1.29 16 5 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 6 O -0.55 -10.09 11.95 -43.03 -0.51 -10.60 16 7 C 0.13 2.46 5.92 -4.04 -0.02 2.43 16 8 N -0.73 -18.72 5.49 -59.91 -0.33 -19.05 16 9 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 10 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 11 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 12 N -0.93 -28.76 13.06 55.49 0.72 -28.03 16 13 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 15 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 C 0.58 7.13 7.41 -10.99 -0.08 7.05 16 18 O -0.52 -8.23 15.65 -2.24 -0.04 -8.26 16 19 C -0.15 -1.29 2.44 -172.27 -0.42 -1.71 16 20 C -0.07 -0.55 7.27 -24.74 -0.18 -0.73 16 21 C -0.23 -1.63 3.03 -169.85 -0.51 -2.14 16 22 C 0.52 4.19 3.63 37.16 0.13 4.32 16 23 F -0.17 -1.56 17.32 2.25 0.04 -1.53 16 24 F -0.18 -1.46 17.32 2.25 0.04 -1.42 16 25 F -0.18 -1.50 17.32 2.25 0.04 -1.46 16 26 C -0.06 -0.53 7.78 -26.72 -0.21 -0.73 16 27 C -0.07 -0.47 7.41 -25.97 -0.19 -0.66 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.46 4.07 -51.93 -0.21 0.25 16 30 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 31 H 0.09 1.15 7.42 -51.93 -0.39 0.76 16 32 H 0.09 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.37 6.49 8.75 45.56 0.40 6.89 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.39 10.86 7.54 -40.82 -0.31 10.55 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 38 H 0.10 0.76 7.91 -51.93 -0.41 0.34 16 39 H 0.10 0.56 6.15 -51.93 -0.32 0.24 16 40 H 0.09 0.70 7.95 -51.93 -0.41 0.29 16 41 H 0.09 0.80 7.91 -51.93 -0.41 0.39 16 42 H 0.09 0.45 7.29 -51.93 -0.38 0.07 16 43 H 0.09 0.53 7.93 -51.93 -0.41 0.12 16 LS Contribution 368.02 15.07 5.55 5.55 Total: -1.00 -34.14 368.02 -6.22 -40.36 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -4.92 Total: 10.22 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -1.26 Total: 3.66 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.12 Total: -54.10 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.55 Total: -18.86 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.12 Total: -4.41 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.14 -6.22 -40.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677137921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.042 kcal (2) G-P(sol) polarization free energy of solvation -34.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds