Wall clock time and date at job start Sat Apr 11 2020 04:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36015 * 116.99628 * 2 1 4 4 C 1.35494 * 120.48839 * 359.97438 * 3 2 1 5 5 O 1.33835 * 121.01462 * 180.02562 * 4 3 2 6 6 C 1.34291 * 122.04323 * 359.97438 * 5 4 3 7 7 C 1.48045 * 119.57419 * 180.02562 * 6 5 4 8 8 O 1.21506 * 120.00388 * 179.97438 * 7 6 5 9 9 N 1.34781 * 119.99809 * 359.97438 * 7 6 5 10 10 C 1.46494 * 119.99798 * 180.02562 * 9 7 6 11 11 C 1.53008 * 109.47206 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47212 * 179.97438 * 11 10 9 13 13 N 1.46496 * 109.46867 * 179.97438 * 12 11 10 14 14 C 1.36935 * 120.00168 * 270.00096 * 13 12 11 15 15 H 1.07997 * 119.99803 * 144.92408 * 14 13 12 16 16 C 1.38812 * 120.00029 * 324.92336 * 14 13 12 17 17 N 1.31620 * 119.99923 * 337.94615 * 16 14 13 18 18 Si 1.86798 * 120.00018 * 157.95106 * 16 14 13 19 19 H 1.48498 * 109.47670 * 59.99599 * 18 16 14 20 20 H 1.48500 * 109.47161 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46770 * 299.99456 * 18 16 14 22 22 C 1.46503 * 119.99704 * 90.00219 * 13 12 11 23 23 C 1.53004 * 117.49740 * 183.23422 * 22 13 12 24 24 C 1.52995 * 117.49870 * 114.57730 * 22 13 12 25 25 C 1.35799 * 120.85281 * 0.26520 * 6 5 4 26 26 C 1.42006 * 120.48103 * 180.02562 * 3 2 1 27 27 O 1.22127 * 120.92173 * 359.97438 * 26 3 2 28 28 H 1.09004 * 109.47213 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47382 * 300.00083 * 1 2 3 30 30 H 1.08993 * 109.47261 * 59.99933 * 1 2 3 31 31 H 1.07993 * 119.49376 * 0.02619 * 4 3 2 32 32 H 0.96996 * 120.00286 * 359.97438 * 9 7 6 33 33 H 1.09005 * 109.47552 * 59.99700 * 10 9 7 34 34 H 1.09000 * 109.47521 * 299.99839 * 10 9 7 35 35 H 1.09001 * 109.46702 * 60.00091 * 11 10 9 36 36 H 1.08994 * 109.46972 * 300.00074 * 11 10 9 37 37 H 1.08995 * 109.46805 * 60.00115 * 12 11 10 38 38 H 1.09000 * 109.47048 * 300.00092 * 12 11 10 39 39 H 0.96995 * 119.99672 * 175.76702 * 17 16 14 40 40 H 1.08999 * 115.55313 * 328.90767 * 22 13 12 41 41 H 1.09001 * 117.49599 * 0.02562 * 23 22 13 42 42 H 1.09000 * 117.49619 * 145.02077 * 23 22 13 43 43 H 1.09002 * 117.50220 * 214.97803 * 24 22 13 44 44 H 1.09001 * 117.50083 * 359.97438 * 24 22 13 45 45 H 1.08000 * 120.55199 * 179.71109 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3181 2.3545 -0.0005 5 8 1.9147 3.5525 -0.0010 6 6 3.2512 3.6830 -0.0006 7 6 3.8534 5.0354 -0.0006 8 8 5.0618 5.1625 0.0003 9 7 3.0612 6.1258 -0.0016 10 6 3.6571 7.4641 -0.0022 11 6 2.5467 8.5168 -0.0040 12 6 3.1690 9.9145 -0.0040 13 7 2.1058 10.9224 -0.0064 14 6 1.6108 11.3926 -1.1933 15 1 0.5641 11.6443 -1.2800 16 6 2.4542 11.5458 -2.2851 17 7 3.7519 11.6677 -2.1022 18 14 1.7474 11.5792 -4.0139 19 1 0.7926 12.7099 -4.1367 20 1 2.8483 11.7514 -4.9955 21 1 1.0395 10.3019 -4.2839 22 6 1.5723 11.4272 1.2613 23 6 0.4118 12.4219 1.1931 24 6 1.8098 12.9024 1.5902 25 6 4.0576 2.5903 -0.0049 26 6 3.4639 1.2983 -0.0005 27 8 4.1540 0.2907 -0.0006 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 0.2397 2.2976 -0.0005 32 1 2.0965 6.0244 -0.0027 33 1 4.2747 7.5865 -0.8920 34 1 4.2739 7.5876 0.8879 35 1 1.9288 8.3946 0.8856 36 1 1.9303 8.3931 -0.8944 37 1 3.7872 10.0370 -0.8934 38 1 3.7852 10.0379 0.8866 39 1 4.3472 11.7130 -2.8667 40 1 1.5804 10.7192 2.0900 41 1 0.0450 12.7003 0.2052 42 1 -0.3435 12.3685 1.9772 43 1 1.9737 13.1650 2.6353 44 1 2.3634 13.4973 0.8637 45 1 5.1319 2.7008 -0.0092 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752265607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:39:26 Heat of formation + Delta-G solvation = -44.871919 kcal Electronic energy + Delta-G solvation = -28143.776385 eV Core-core repulsion = 23937.658197 eV Total energy + Delta-G solvation = -4206.118189 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.156 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.50417 -40.02334 -39.38112 -38.46724 -37.22675 -35.63743 -33.72777 -32.94466 -32.10586 -31.42488 -29.55724 -28.32122 -26.23254 -24.86777 -24.32159 -23.42057 -21.52580 -21.30171 -21.08214 -19.78158 -19.38420 -19.09050 -18.18953 -17.24021 -16.58015 -16.41354 -16.04355 -15.87159 -15.59178 -15.41023 -15.22334 -15.19908 -14.78553 -14.62114 -14.33120 -14.14660 -13.93872 -13.62399 -13.09279 -12.72963 -12.32256 -12.06328 -12.01383 -11.97077 -11.65424 -11.11988 -10.92416 -10.87718 -10.75664 -10.64482 -10.27348 -10.21757 -10.12798 -10.03953 -9.74387 -9.64736 -9.33247 -9.19315 -8.69976 -8.54151 -6.66155 -5.87074 -3.48108 0.04122 0.54136 1.67260 2.44369 2.54581 2.80970 3.07941 3.29305 3.36950 3.37409 3.78646 3.96748 4.18562 4.37219 4.48922 4.58549 4.72554 4.86237 4.86503 4.97605 5.04505 5.08176 5.25017 5.48333 5.57125 5.59383 5.84222 5.85843 6.00426 6.08460 6.19113 6.26110 6.40151 6.43954 6.50923 6.55233 6.57414 6.62256 6.96274 7.00441 7.16849 7.21850 7.27441 7.57326 7.71985 7.76917 8.38719 9.06505 9.69460 10.24946 11.08758 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.014470 B = 0.002214 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.571774 B =12643.023232 C =12800.108110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.283 6.283 3 C -0.052 4.052 4 C -0.003 4.003 5 O -0.195 6.195 6 C 0.095 3.905 7 C 0.569 3.431 8 O -0.502 6.502 9 N -0.701 5.701 10 C 0.116 3.884 11 C -0.147 4.147 12 C 0.149 3.851 13 N -0.551 5.551 14 C -0.260 4.260 15 H 0.066 0.934 16 C 0.011 3.989 17 N -0.882 5.882 18 Si 0.896 3.104 19 H -0.281 1.281 20 H -0.290 1.290 21 H -0.283 1.283 22 C 0.120 3.880 23 C -0.197 4.197 24 C -0.222 4.222 25 C -0.230 4.230 26 C 0.408 3.592 27 O -0.458 6.458 28 H 0.108 0.892 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.204 0.796 32 H 0.408 0.592 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.103 0.897 38 H 0.029 0.971 39 H 0.256 0.744 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.052 -17.087 5.745 19.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.196 6.196 3 C -0.099 4.099 4 C -0.069 4.069 5 O -0.098 6.098 6 C 0.043 3.957 7 C 0.352 3.648 8 O -0.378 6.378 9 N -0.351 5.351 10 C -0.006 4.006 11 C -0.187 4.187 12 C 0.022 3.978 13 N -0.268 5.268 14 C -0.389 4.389 15 H 0.083 0.917 16 C -0.189 4.189 17 N -0.524 5.524 18 Si 0.725 3.275 19 H -0.207 1.207 20 H -0.215 1.215 21 H -0.209 1.209 22 C 0.011 3.989 23 C -0.235 4.235 24 C -0.263 4.263 25 C -0.251 4.251 26 C 0.294 3.706 27 O -0.341 6.341 28 H 0.126 0.874 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.220 0.780 32 H 0.244 0.756 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.121 0.879 38 H 0.048 0.952 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.115 0.885 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.110 0.890 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -6.733 -17.372 5.597 19.454 hybrid contribution -1.223 0.002 -0.915 1.527 sum -7.956 -17.371 4.682 19.671 Atomic orbital electron populations 1.23249 0.78336 1.05155 1.01437 1.86294 1.21003 1.23638 1.88676 1.21036 0.95370 0.86060 1.07477 1.23932 0.98238 0.81063 1.03699 1.82919 1.20202 1.30886 1.75751 1.22601 0.80125 0.96455 0.96500 1.17393 0.86598 0.82018 0.78841 1.90902 1.12701 1.84585 1.49587 1.46177 1.10673 1.06377 1.71878 1.21690 0.97360 0.78755 1.02823 1.22490 0.97298 0.97040 1.01877 1.20857 0.90715 0.83658 1.02579 1.43391 1.42027 1.41600 0.99734 1.19022 0.92311 1.40005 0.87601 0.91662 1.25130 0.95424 0.99229 0.99134 1.70026 1.02457 1.49900 1.30026 0.86481 0.78248 0.78257 0.84492 1.20694 1.21530 1.20892 1.21224 0.98750 0.88439 0.90457 1.23037 0.91261 1.07173 1.02033 1.23366 0.99630 1.03686 0.99617 1.23173 1.03809 0.90874 1.07290 1.17103 0.86245 0.89847 0.77360 1.90851 1.65104 1.37955 1.40171 0.87361 0.92241 0.92210 0.77982 0.75648 0.90586 0.91057 0.92937 0.91293 0.87916 0.95218 0.93363 0.89602 0.88505 0.90808 0.91234 0.89016 0.80319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.82 101.05 0.99 1.05 16 2 O -0.28 -2.76 10.35 -35.03 -0.36 -3.13 16 3 C -0.05 -0.52 6.72 -39.12 -0.26 -0.78 16 4 C 0.00 -0.02 10.43 29.75 0.31 0.29 16 5 O -0.19 -1.63 9.06 6.98 0.06 -1.57 16 6 C 0.09 1.00 6.90 -36.43 -0.25 0.75 16 7 C 0.57 7.20 7.80 -12.24 -0.10 7.11 16 8 O -0.50 -7.95 16.26 5.36 0.09 -7.87 16 9 N -0.70 -8.26 5.55 -61.19 -0.34 -8.60 16 10 C 0.12 1.65 5.67 -4.04 -0.02 1.63 16 11 C -0.15 -2.37 5.65 -26.73 -0.15 -2.52 16 12 C 0.15 3.07 5.34 -4.04 -0.02 3.05 16 13 N -0.55 -12.50 2.78 -165.67 -0.46 -12.96 16 14 C -0.26 -6.52 8.63 -15.06 -0.13 -6.65 16 15 H 0.07 1.65 6.55 -52.49 -0.34 1.30 16 16 C 0.01 0.29 4.96 -17.43 -0.09 0.21 16 17 N -0.88 -23.82 11.33 55.49 0.63 -23.19 16 18 Si 0.90 20.36 29.61 -169.99 -5.03 15.33 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 C 0.12 2.40 6.56 -67.93 -0.45 1.95 16 23 C -0.20 -3.67 9.80 -26.69 -0.26 -3.93 16 24 C -0.22 -4.33 10.36 -26.70 -0.28 -4.61 16 25 C -0.23 -2.65 9.56 -38.94 -0.37 -3.02 16 26 C 0.41 5.20 6.82 -36.62 -0.25 4.95 16 27 O -0.46 -7.42 17.74 -10.44 -0.19 -7.61 16 28 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.15 7.67 -51.93 -0.40 -0.24 16 30 H 0.06 0.16 7.66 -51.93 -0.40 -0.24 16 31 H 0.20 0.59 6.22 -52.49 -0.33 0.26 16 32 H 0.41 3.90 7.87 -40.82 -0.32 3.58 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.10 2.45 5.35 -51.93 -0.28 2.17 16 38 H 0.03 0.59 8.07 -51.93 -0.42 0.17 16 39 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 40 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.10 1.98 6.37 -51.93 -0.33 1.65 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 45 H 0.18 2.09 7.56 -52.49 -0.40 1.69 16 LS Contribution 383.94 15.07 5.79 5.79 Total: -1.00 -31.87 383.94 -7.29 -39.17 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -6.15 Total: 5.17 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -1.33 Total: -0.52 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: -0.17 Total: -44.76 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.40 Total: -20.17 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.33 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.87 -7.29 -39.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752265607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.703 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds