Wall clock time and date at job start Sat Apr 11 2020 04:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00097 * 2 1 4 4 H 1.48502 * 109.46987 * 274.98289 * 3 2 1 5 5 H 1.48496 * 109.47628 * 34.98164 * 3 2 1 6 6 H 1.48495 * 109.47526 * 154.98466 * 3 2 1 7 7 C 1.38809 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99566 * 172.83535 * 7 2 1 9 9 N 1.36939 * 120.00242 * 352.83921 * 7 2 1 10 10 C 1.46642 * 125.32817 * 5.22488 * 9 7 2 11 11 C 1.53686 * 108.00639 * 180.81753 * 10 9 7 12 12 H 1.08998 * 113.05830 * 253.80560 * 11 10 9 13 13 C 1.53731 * 109.33850 * 127.55837 * 11 10 9 14 14 N 1.46666 * 107.94049 * 266.25032 * 13 11 10 15 15 C 1.34783 * 125.33600 * 180.54822 * 14 13 11 16 16 O 1.21594 * 119.99848 * 354.98797 * 15 14 13 17 17 C 1.47464 * 119.99578 * 174.71157 * 15 14 13 18 18 C 1.38717 * 120.37706 * 43.08941 * 17 15 14 19 19 C 1.38907 * 120.64859 * 179.97438 * 18 17 15 20 20 C 1.36283 * 121.17734 * 0.04549 * 19 18 17 21 21 C 1.40561 * 120.12404 * 359.97438 * 20 19 18 22 22 C 1.40583 * 121.15901 * 179.97438 * 21 20 19 23 23 C 1.36133 * 119.64846 * 180.02562 * 22 21 20 24 24 C 1.39302 * 120.95179 * 359.97438 * 23 22 21 25 25 C 1.36260 * 120.93447 * 0.04643 * 24 23 22 26 26 C 1.40142 * 119.68467 * 359.63776 * 25 24 23 27 27 C 1.46781 * 109.32671 * 0.80998 * 14 13 11 28 28 C 1.54165 * 106.52035 * 341.08836 * 27 14 13 29 29 H 1.08998 * 113.83149 * 265.67670 * 28 27 14 30 30 C 1.46740 * 125.32856 * 185.20513 * 9 7 2 31 31 H 0.96997 * 119.99592 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.75712 * 61.17546 * 10 9 7 33 33 H 1.08996 * 109.75939 * 300.46162 * 10 9 7 34 34 H 1.09004 * 109.76875 * 146.63012 * 13 11 10 35 35 H 1.08993 * 109.77109 * 25.87475 * 13 11 10 36 36 H 1.08003 * 119.67309 * 359.97438 * 18 17 15 37 37 H 1.08003 * 119.40865 * 180.02562 * 19 18 17 38 38 H 1.07998 * 119.94003 * 179.97438 * 20 19 18 39 39 H 1.07995 * 120.17496 * 0.02562 * 22 21 20 40 40 H 1.07996 * 119.52098 * 180.02562 * 23 22 21 41 41 H 1.07997 * 119.52954 * 180.02562 * 24 23 22 42 42 H 1.07994 * 120.15499 * 179.97438 * 25 24 23 43 43 H 1.08991 * 110.02707 * 100.50815 * 27 14 13 44 44 H 1.09006 * 110.02541 * 221.92855 * 27 14 13 45 45 H 1.09004 * 110.00978 * 42.35938 * 30 9 7 46 46 H 1.08998 * 110.00825 * 280.99128 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1071 -1.3948 5 1 1.5044 2.6200 0.8026 6 1 3.5965 1.4121 0.5920 7 6 2.0102 -1.2022 0.0005 8 1 3.0839 -1.2058 -0.1161 9 7 1.3335 -2.3834 0.1489 10 6 -0.1250 -2.5236 0.2067 11 6 -0.4519 -4.0129 0.3994 12 1 -0.8424 -4.4844 -0.5024 13 6 -1.3921 -4.1760 1.6046 14 7 -0.5680 -4.4471 2.7871 15 6 -1.0374 -4.6582 4.0328 16 8 -2.2258 -4.5421 4.2624 17 6 -0.1106 -5.0361 5.1157 18 6 1.1138 -4.3972 5.2460 19 6 1.9909 -4.7482 6.2643 20 6 1.6768 -5.7260 7.1602 21 6 0.4471 -6.4004 7.0661 22 6 0.1011 -7.4128 7.9781 23 6 -1.0979 -8.0463 7.8581 24 6 -1.9896 -7.7059 6.8435 25 6 -1.6861 -6.7299 5.9424 26 6 -0.4635 -6.0517 6.0393 27 6 0.8486 -4.4461 2.4026 28 6 0.8879 -4.6414 0.8739 29 1 1.0093 -5.6798 0.5655 30 6 1.9544 -3.7070 0.2745 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5666 -2.1667 -0.7237 33 1 -0.5176 -1.9486 1.0453 34 1 -2.0732 -5.0091 1.4309 35 1 -1.9618 -3.2589 1.7545 36 1 1.3877 -3.6192 4.5488 37 1 2.9388 -4.2374 6.3473 38 1 2.3739 -5.9832 7.9439 39 1 0.7828 -7.6864 8.7698 40 1 -1.3618 -8.8234 8.5601 41 1 -2.9348 -8.2231 6.7699 42 1 -2.3866 -6.4765 5.1606 43 1 1.3079 -3.4952 2.6722 44 1 1.3699 -5.2664 2.8962 45 1 2.8178 -3.6526 0.9377 46 1 2.2596 -4.0704 -0.7067 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049198822.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:38:57 Heat of formation + Delta-G solvation = 48.304576 kcal Electronic energy + Delta-G solvation = -28931.965628 eV Core-core repulsion = 25173.029889 eV Total energy + Delta-G solvation = -3758.935738 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.158 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.91659 -39.76749 -38.06856 -36.52290 -34.95063 -32.89048 -32.26750 -30.70335 -30.33921 -29.49693 -29.13062 -25.77469 -25.55861 -24.23589 -23.13145 -23.01859 -22.09689 -20.14230 -19.49776 -19.31534 -17.86699 -17.14544 -16.84706 -16.60426 -16.28428 -15.79751 -15.11011 -14.88627 -14.45650 -14.26055 -13.89698 -13.74363 -13.64054 -13.59036 -13.22316 -13.10011 -12.76929 -12.59579 -12.20892 -12.06730 -11.97811 -11.50314 -11.47929 -11.40432 -11.27233 -11.06096 -10.93432 -10.82775 -10.44431 -10.17112 -10.11735 -10.06859 -9.86685 -9.68722 -9.62522 -8.76375 -8.61227 -8.36149 -7.99919 -6.87441 -5.77443 -3.10244 0.23039 0.88483 1.73846 2.70582 3.01129 3.21473 3.37085 3.42854 3.45025 4.00620 4.39854 4.46073 4.59894 4.69072 4.74634 4.83055 4.88899 4.96747 5.06223 5.20613 5.23039 5.24750 5.32877 5.45876 5.55438 5.56756 5.65262 5.68500 5.79178 5.84095 5.93906 5.95901 6.00322 6.09567 6.15908 6.23420 6.25308 6.34878 6.39633 6.44144 6.52093 6.53675 6.59439 6.67861 6.77796 6.84252 7.51032 7.55166 7.71268 7.77906 8.22262 8.28247 9.17426 9.78364 10.42131 11.34296 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.017504 B = 0.003116 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.248804 B = 8984.950028 C = 9588.926534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.004 4.004 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.233 4.233 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.183 3.817 11 C -0.123 4.123 12 H 0.091 0.909 13 C 0.121 3.879 14 N -0.599 5.599 15 C 0.572 3.428 16 O -0.539 6.539 17 C -0.109 4.109 18 C -0.079 4.079 19 C -0.119 4.119 20 C -0.089 4.089 21 C -0.057 4.057 22 C -0.110 4.110 23 C -0.117 4.117 24 C -0.119 4.119 25 C -0.098 4.098 26 C -0.016 4.016 27 C 0.109 3.891 28 C -0.112 4.112 29 H 0.090 0.910 30 C 0.145 3.855 31 H 0.253 0.747 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.137 0.863 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.140 0.860 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.039 0.961 46 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.627 -16.481 12.748 20.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.201 4.201 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.361 4.361 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.058 3.942 11 C -0.142 4.142 12 H 0.110 0.890 13 C -0.002 4.002 14 N -0.330 5.330 15 C 0.361 3.639 16 O -0.418 6.418 17 C -0.112 4.112 18 C -0.097 4.097 19 C -0.137 4.137 20 C -0.107 4.107 21 C -0.057 4.057 22 C -0.127 4.127 23 C -0.135 4.135 24 C -0.137 4.137 25 C -0.116 4.116 26 C -0.016 4.016 27 C -0.013 4.013 28 C -0.132 4.132 29 H 0.108 0.892 30 C 0.019 3.981 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.155 0.845 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.158 0.842 43 H 0.100 0.900 44 H 0.086 0.914 45 H 0.057 0.943 46 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 0.904 -16.183 12.917 20.726 hybrid contribution 0.483 1.011 -0.066 1.123 sum 1.388 -15.172 12.851 19.932 Atomic orbital electron populations 1.69968 1.04919 1.25172 1.56382 1.24821 0.95673 0.97710 1.01918 0.86148 0.78718 0.83675 0.77506 1.21656 1.21638 1.20608 1.19007 0.91134 0.82420 1.43513 0.90368 1.44214 1.01461 1.01063 1.86146 1.21135 0.84698 0.87013 1.01336 1.23157 0.93955 1.00843 0.96280 0.89037 1.21861 0.93462 1.01102 0.83743 1.48174 1.08687 1.68821 1.07363 1.17738 0.87517 0.77470 0.81193 1.90758 1.16350 1.52626 1.82097 1.19906 0.95324 0.99037 0.96958 1.21621 0.91891 0.98442 0.97788 1.20812 0.99989 0.97945 0.94975 1.21166 0.95358 0.95480 0.98742 1.18027 0.94515 0.97430 0.95768 1.20987 0.97308 0.95932 0.98519 1.20864 0.94275 0.99937 0.98376 1.20920 0.99709 0.97815 0.95244 1.21373 0.95810 0.94687 0.99698 1.17792 0.94566 0.95219 0.94048 1.22315 0.81693 1.01846 0.95462 1.22959 0.97271 0.99367 0.93568 0.89151 1.21166 0.93800 0.86209 0.96946 0.93662 0.93883 0.92868 0.92173 0.90608 0.84526 0.85114 0.85264 0.85506 0.86003 0.85904 0.84240 0.90050 0.91362 0.94336 0.96237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.37 10.29 55.49 0.57 -25.80 16 2 C 0.00 -0.12 5.48 -17.43 -0.10 -0.22 16 3 Si 0.91 21.65 29.56 -169.99 -5.02 16.62 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.23 -6.21 10.24 -15.06 -0.15 -6.36 16 8 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 9 N -0.60 -14.46 3.37 -171.94 -0.58 -15.04 16 10 C 0.18 4.21 4.76 -3.61 -0.02 4.20 16 11 C -0.12 -2.15 4.02 -88.60 -0.36 -2.50 16 12 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 13 C 0.12 2.07 6.24 -3.57 -0.02 2.05 16 14 N -0.60 -10.13 3.31 -173.41 -0.57 -10.71 16 15 C 0.57 10.05 7.00 -12.50 -0.09 9.96 16 16 O -0.54 -10.84 15.24 5.28 0.08 -10.76 16 17 C -0.11 -1.66 5.39 -104.62 -0.56 -2.22 16 18 C -0.08 -1.04 8.07 -39.16 -0.32 -1.36 16 19 C -0.12 -1.28 9.92 -40.04 -0.40 -1.68 16 20 C -0.09 -0.91 9.75 -39.41 -0.38 -1.29 16 21 C -0.06 -0.68 5.74 -106.86 -0.61 -1.30 16 22 C -0.11 -1.07 9.77 -39.45 -0.39 -1.46 16 23 C -0.12 -1.11 9.95 -39.94 -0.40 -1.51 16 24 C -0.12 -1.31 9.95 -39.90 -0.40 -1.70 16 25 C -0.10 -1.35 9.14 -39.58 -0.36 -1.71 16 26 C -0.02 -0.22 5.76 -106.56 -0.61 -0.84 16 27 C 0.11 1.69 4.56 -3.28 -0.01 1.68 16 28 C -0.11 -1.77 4.19 -88.25 -0.37 -2.14 16 29 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 30 C 0.15 2.74 6.37 -3.42 -0.02 2.72 16 31 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.04 1.11 7.56 -51.93 -0.39 0.72 16 33 H 0.05 1.39 6.42 -51.93 -0.33 1.06 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 1.45 7.44 -51.93 -0.39 1.07 16 36 H 0.14 1.84 5.88 -52.48 -0.31 1.53 16 37 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 40 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 42 H 0.14 2.11 5.98 -52.49 -0.31 1.79 16 43 H 0.08 1.41 6.56 -51.93 -0.34 1.07 16 44 H 0.07 0.91 7.09 -51.93 -0.37 0.54 16 45 H 0.04 0.70 7.95 -51.93 -0.41 0.28 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 363.26 15.07 5.47 5.47 Total: -1.00 -31.88 363.26 -11.83 -43.71 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.21 Total: 2.18 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -5.57 Total: -5.68 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -0.58 Total: -51.54 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.88 -11.83 -43.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049198822.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.014 kcal (2) G-P(sol) polarization free energy of solvation -31.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds