Wall clock time and date at job start Sat Apr 11 2020 04:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00097 * 2 1 4 4 H 1.48502 * 109.46987 * 274.98289 * 3 2 1 5 5 H 1.48496 * 109.47628 * 34.98164 * 3 2 1 6 6 H 1.48495 * 109.47526 * 154.98466 * 3 2 1 7 7 C 1.38809 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99566 * 172.83535 * 7 2 1 9 9 N 1.36939 * 120.00242 * 352.83921 * 7 2 1 10 10 C 1.46642 * 125.32817 * 5.22488 * 9 7 2 11 11 C 1.53686 * 108.00639 * 180.81753 * 10 9 7 12 12 H 1.08998 * 113.05830 * 253.80560 * 11 10 9 13 13 C 1.53731 * 109.33850 * 127.55837 * 11 10 9 14 14 N 1.46666 * 107.94049 * 266.25032 * 13 11 10 15 15 C 1.34783 * 125.33600 * 180.54822 * 14 13 11 16 16 O 1.21594 * 119.99848 * 354.98797 * 15 14 13 17 17 C 1.47464 * 119.99578 * 174.71157 * 15 14 13 18 18 C 1.38717 * 120.37706 * 43.08941 * 17 15 14 19 19 C 1.38907 * 120.64859 * 179.97438 * 18 17 15 20 20 C 1.36283 * 121.17734 * 0.04549 * 19 18 17 21 21 C 1.40561 * 120.12404 * 359.97438 * 20 19 18 22 22 C 1.40583 * 121.15901 * 179.97438 * 21 20 19 23 23 C 1.36133 * 119.64846 * 180.02562 * 22 21 20 24 24 C 1.39302 * 120.95179 * 359.97438 * 23 22 21 25 25 C 1.36260 * 120.93447 * 0.04643 * 24 23 22 26 26 C 1.40142 * 119.68467 * 359.63776 * 25 24 23 27 27 C 1.46781 * 109.32671 * 0.80998 * 14 13 11 28 28 C 1.54165 * 106.52035 * 341.08836 * 27 14 13 29 29 H 1.08998 * 113.83149 * 265.67670 * 28 27 14 30 30 C 1.46740 * 125.32856 * 185.20513 * 9 7 2 31 31 H 0.96997 * 119.99592 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.75712 * 61.17546 * 10 9 7 33 33 H 1.08996 * 109.75939 * 300.46162 * 10 9 7 34 34 H 1.09004 * 109.76875 * 146.63012 * 13 11 10 35 35 H 1.08993 * 109.77109 * 25.87475 * 13 11 10 36 36 H 1.08003 * 119.67309 * 359.97438 * 18 17 15 37 37 H 1.08003 * 119.40865 * 180.02562 * 19 18 17 38 38 H 1.07998 * 119.94003 * 179.97438 * 20 19 18 39 39 H 1.07995 * 120.17496 * 0.02562 * 22 21 20 40 40 H 1.07996 * 119.52098 * 180.02562 * 23 22 21 41 41 H 1.07997 * 119.52954 * 180.02562 * 24 23 22 42 42 H 1.07994 * 120.15499 * 179.97438 * 25 24 23 43 43 H 1.08991 * 110.02707 * 100.50815 * 27 14 13 44 44 H 1.09006 * 110.02541 * 221.92855 * 27 14 13 45 45 H 1.09004 * 110.00978 * 42.35938 * 30 9 7 46 46 H 1.08998 * 110.00825 * 280.99128 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1071 -1.3948 5 1 1.5044 2.6200 0.8026 6 1 3.5965 1.4121 0.5920 7 6 2.0102 -1.2022 0.0005 8 1 3.0839 -1.2058 -0.1161 9 7 1.3335 -2.3834 0.1489 10 6 -0.1250 -2.5236 0.2067 11 6 -0.4519 -4.0129 0.3994 12 1 -0.8424 -4.4844 -0.5024 13 6 -1.3921 -4.1760 1.6046 14 7 -0.5680 -4.4471 2.7871 15 6 -1.0374 -4.6582 4.0328 16 8 -2.2258 -4.5421 4.2624 17 6 -0.1106 -5.0361 5.1157 18 6 1.1138 -4.3972 5.2460 19 6 1.9909 -4.7482 6.2643 20 6 1.6768 -5.7260 7.1602 21 6 0.4471 -6.4004 7.0661 22 6 0.1011 -7.4128 7.9781 23 6 -1.0979 -8.0463 7.8581 24 6 -1.9896 -7.7059 6.8435 25 6 -1.6861 -6.7299 5.9424 26 6 -0.4635 -6.0517 6.0393 27 6 0.8486 -4.4461 2.4026 28 6 0.8879 -4.6414 0.8739 29 1 1.0093 -5.6798 0.5655 30 6 1.9544 -3.7070 0.2745 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5666 -2.1667 -0.7237 33 1 -0.5176 -1.9486 1.0453 34 1 -2.0732 -5.0091 1.4309 35 1 -1.9618 -3.2589 1.7545 36 1 1.3877 -3.6192 4.5488 37 1 2.9388 -4.2374 6.3473 38 1 2.3739 -5.9832 7.9439 39 1 0.7828 -7.6864 8.7698 40 1 -1.3618 -8.8234 8.5601 41 1 -2.9348 -8.2231 6.7699 42 1 -2.3866 -6.4765 5.1606 43 1 1.3079 -3.4952 2.6722 44 1 1.3699 -5.2664 2.8962 45 1 2.8178 -3.6526 0.9377 46 1 2.2596 -4.0704 -0.7067 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049198822.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:38:55 Heat of formation + Delta-G solvation = 30.780193 kcal Electronic energy + Delta-G solvation = -28932.725542 eV Core-core repulsion = 25173.029889 eV Total energy + Delta-G solvation = -3759.695653 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.158 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.04641 -40.96334 -39.46891 -37.41552 -36.58787 -34.20780 -33.72277 -32.06067 -31.28885 -31.13259 -30.17205 -27.48066 -27.08569 -25.57498 -24.22680 -23.88325 -23.27270 -21.83419 -20.85726 -20.64047 -18.98975 -18.70073 -18.00488 -17.79673 -17.52708 -16.82473 -16.57745 -16.34646 -15.97510 -15.55570 -15.23104 -14.93730 -14.69387 -14.68160 -14.43925 -14.31503 -14.13598 -13.77851 -13.62290 -13.44156 -13.24962 -13.21785 -12.87050 -12.73664 -12.65913 -12.31514 -12.20171 -12.00169 -11.95167 -11.89107 -11.86548 -11.52847 -11.39668 -11.06128 -10.85979 -10.66089 -9.76119 -9.62100 -8.88183 -8.86753 -7.86254 -5.19755 -0.67473 0.02111 0.79879 1.45312 1.46652 1.55815 1.61562 1.86706 2.09059 2.49396 3.11426 3.20974 3.33329 3.46666 3.58718 3.76357 3.81696 3.86509 3.93503 3.95937 4.10427 4.20861 4.24247 4.28684 4.36636 4.41641 4.48442 4.51028 4.57901 4.66119 4.74364 4.81049 4.88623 4.93235 5.03131 5.07036 5.12494 5.13937 5.21987 5.28593 5.36588 5.37894 5.49970 5.57474 5.60437 5.62819 5.76501 5.81695 6.03561 6.21099 6.37888 6.94544 7.10847 7.80675 8.42403 9.24355 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.017504 B = 0.003116 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.248804 B = 8984.950028 C = 9588.926534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.067 4.067 3 Si 0.973 3.027 4 H -0.288 1.288 5 H -0.300 1.300 6 H -0.264 1.264 7 C -0.236 4.236 8 H 0.088 0.912 9 N -0.622 5.622 10 C 0.197 3.803 11 C -0.111 4.111 12 H 0.117 0.883 13 C 0.124 3.876 14 N -0.602 5.602 15 C 0.567 3.433 16 O -0.578 6.578 17 C -0.143 4.143 18 C -0.076 4.076 19 C -0.130 4.130 20 C -0.067 4.067 21 C -0.076 4.076 22 C -0.098 4.098 23 C -0.121 4.121 24 C -0.109 4.109 25 C -0.138 4.138 26 C -0.033 4.033 27 C 0.116 3.884 28 C -0.094 4.094 29 H 0.134 0.866 30 C 0.140 3.860 31 H 0.244 0.756 32 H 0.003 0.997 33 H 0.009 0.991 34 H 0.080 0.920 35 H 0.042 0.958 36 H 0.126 0.874 37 H 0.159 0.841 38 H 0.172 0.828 39 H 0.166 0.834 40 H 0.157 0.843 41 H 0.140 0.860 42 H 0.111 0.889 43 H 0.058 0.942 44 H 0.097 0.903 45 H 0.051 0.949 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.575 -19.572 15.146 25.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.260 4.260 3 Si 0.802 3.198 4 H -0.215 1.215 5 H -0.227 1.227 6 H -0.188 1.188 7 C -0.365 4.365 8 H 0.106 0.894 9 N -0.349 5.349 10 C 0.071 3.929 11 C -0.130 4.130 12 H 0.135 0.865 13 C 0.001 3.999 14 N -0.333 5.333 15 C 0.358 3.642 16 O -0.460 6.460 17 C -0.146 4.146 18 C -0.095 4.095 19 C -0.147 4.147 20 C -0.085 4.085 21 C -0.076 4.076 22 C -0.115 4.115 23 C -0.139 4.139 24 C -0.127 4.127 25 C -0.156 4.156 26 C -0.033 4.033 27 C -0.006 4.006 28 C -0.114 4.114 29 H 0.152 0.848 30 C 0.015 3.985 31 H 0.053 0.947 32 H 0.021 0.979 33 H 0.027 0.973 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.143 0.857 37 H 0.177 0.823 38 H 0.189 0.811 39 H 0.184 0.816 40 H 0.175 0.825 41 H 0.158 0.842 42 H 0.129 0.871 43 H 0.076 0.924 44 H 0.115 0.885 45 H 0.069 0.931 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.904 -19.310 15.304 24.946 hybrid contribution -0.421 1.902 -0.732 2.081 sum 3.483 -17.407 14.572 22.967 Atomic orbital electron populations 1.70213 1.06429 1.25032 1.58292 1.25643 0.96438 1.01059 1.02814 0.85139 0.78019 0.79507 0.77181 1.21529 1.22744 1.18802 1.19436 0.91761 0.83628 1.41702 0.89447 1.44503 1.02027 1.02485 1.85858 1.20767 0.84369 0.90256 0.97471 1.23001 0.95435 0.97149 0.97431 0.86469 1.21741 0.93703 1.00321 0.84126 1.48263 1.09231 1.68592 1.07233 1.18299 0.87572 0.76534 0.81764 1.90714 1.18203 1.54340 1.82766 1.19765 0.95949 1.01432 0.97483 1.21671 0.91656 0.97703 0.98432 1.21091 1.00571 0.98662 0.94393 1.21642 0.94818 0.93494 0.98503 1.18389 0.94912 0.98603 0.95704 1.21462 0.97761 0.94151 0.98158 1.21263 0.93845 1.00595 0.98198 1.21237 1.00672 0.96276 0.94473 1.21263 0.96179 0.97208 1.00952 1.17999 0.95343 0.95232 0.94771 1.22291 0.80919 1.01765 0.95655 1.23022 0.94445 1.00737 0.93154 0.84778 1.21388 0.94841 0.84289 0.97988 0.94718 0.97857 0.97277 0.90224 0.93945 0.85654 0.82321 0.81081 0.81623 0.82489 0.84194 0.87105 0.92406 0.88470 0.93051 0.94966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.89 10.29 21.65 0.22 -57.67 16 2 C -0.07 -3.77 5.48 84.86 0.46 -3.31 16 3 Si 0.97 45.68 29.56 68.60 2.03 47.71 16 4 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 6 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 7 C -0.24 -12.83 10.24 84.03 0.86 -11.97 16 8 H 0.09 4.47 7.84 -2.91 -0.02 4.45 16 9 N -0.62 -30.47 3.37 -697.89 -2.35 -32.82 16 10 C 0.20 9.57 4.76 86.58 0.41 9.99 16 11 C -0.11 -3.90 4.02 -9.49 -0.04 -3.94 16 12 H 0.12 3.57 8.14 -2.39 -0.02 3.55 16 13 C 0.12 4.47 6.24 86.59 0.54 5.01 16 14 N -0.60 -21.21 3.31 -820.82 -2.72 -23.93 16 15 C 0.57 21.22 7.00 86.67 0.61 21.83 16 16 O -0.58 -25.30 15.24 -4.01 -0.06 -25.36 16 17 C -0.14 -4.48 5.39 -19.87 -0.11 -4.59 16 18 C -0.08 -1.99 8.07 22.54 0.18 -1.81 16 19 C -0.13 -2.43 9.92 21.97 0.22 -2.21 16 20 C -0.07 -1.09 9.75 22.38 0.22 -0.87 16 21 C -0.08 -1.60 5.74 -21.31 -0.12 -1.72 16 22 C -0.10 -1.48 9.77 22.35 0.22 -1.26 16 23 C -0.12 -1.86 9.95 22.04 0.22 -1.64 16 24 C -0.11 -2.25 9.95 22.06 0.22 -2.03 16 25 C -0.14 -3.92 9.14 22.27 0.20 -3.72 16 26 C -0.03 -0.93 5.76 -21.12 -0.12 -1.05 16 27 C 0.12 3.54 4.56 86.72 0.40 3.93 16 28 C -0.09 -2.80 4.19 -9.26 -0.04 -2.84 16 29 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 30 C 0.14 5.08 6.37 86.65 0.55 5.63 16 31 H 0.24 14.62 8.31 -92.71 -0.77 13.85 16 32 H 0.00 0.18 7.56 -2.39 -0.02 0.16 16 33 H 0.01 0.52 6.42 -2.39 -0.02 0.50 16 34 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.04 1.80 7.44 -2.39 -0.02 1.78 16 36 H 0.13 3.47 5.88 -2.91 -0.02 3.45 16 37 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 39 H 0.17 1.21 8.06 -2.91 -0.02 1.18 16 40 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 41 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 42 H 0.11 3.69 5.98 -2.91 -0.02 3.68 16 43 H 0.06 2.05 6.56 -2.39 -0.02 2.04 16 44 H 0.10 2.42 7.09 -2.38 -0.02 2.41 16 45 H 0.05 1.75 7.95 -2.38 -0.02 1.73 16 46 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -76.64 363.26 3.00 -73.64 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.99 Total: 14.99 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 4.88 Total: 3.43 kcal Atomic # 7 Polarization: -109.57 SS G_CDS: -4.85 Total: -114.42 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.06 Total: -25.36 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -76.64 3.00 -73.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049198822.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.420 kcal (2) G-P(sol) polarization free energy of solvation -76.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds