Wall clock time and date at job start Sat Apr 11 2020 04:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00161 * 2 1 4 4 H 1.48508 * 109.46921 * 239.99603 * 3 2 1 5 5 H 1.48498 * 109.47091 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47110 * 119.99758 * 3 2 1 7 7 C 1.38822 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99899 * 169.08036 * 7 2 1 9 9 N 1.36933 * 119.99497 * 349.08387 * 7 2 1 10 10 C 1.46682 * 121.33652 * 331.87343 * 9 7 2 11 11 C 1.50808 * 109.67397 * 224.43564 * 10 9 7 12 12 C 1.38842 * 117.80556 * 168.47578 * 11 10 9 13 13 C 1.37956 * 120.50469 * 179.52980 * 12 11 10 14 14 C 1.38261 * 119.72000 * 359.90644 * 13 12 11 15 15 C 1.37911 * 119.82707 * 0.26282 * 14 13 12 16 16 C 1.37672 * 122.34932 * 348.39804 * 11 10 9 17 17 C 1.50593 * 122.85768 * 1.52775 * 16 11 10 18 18 C 1.47230 * 121.32802 * 151.90073 * 9 7 2 19 19 H 1.08998 * 109.77215 * 235.37554 * 18 9 7 20 20 C 1.53001 * 109.77391 * 356.16493 * 18 9 7 21 21 N 1.46505 * 109.46832 * 305.00167 * 20 18 9 22 22 C 1.34770 * 119.99563 * 179.97438 * 21 20 18 23 23 O 1.21551 * 120.00472 * 0.02562 * 22 21 20 24 24 C 1.47852 * 119.99933 * 179.97438 * 22 21 20 25 25 C 1.39571 * 120.14174 * 359.72774 * 24 22 21 26 26 C 1.37963 * 119.85444 * 179.78729 * 25 24 22 27 27 C 1.38359 * 120.13910 * 0.48953 * 26 25 24 28 28 C 1.38353 * 120.29462 * 359.73944 * 27 26 25 29 29 C 1.37957 * 120.14800 * 0.02782 * 28 27 26 30 30 H 0.97002 * 119.99506 * 0.02562 * 1 2 3 31 31 H 1.08992 * 109.43562 * 344.49742 * 10 9 7 32 32 H 1.09003 * 109.43502 * 104.37820 * 10 9 7 33 33 H 1.07999 * 119.74514 * 359.50349 * 12 11 10 34 34 H 1.07998 * 120.14029 * 179.88213 * 13 12 11 35 35 H 1.07999 * 120.08702 * 180.28818 * 14 13 12 36 36 H 1.07997 * 119.70927 * 180.02562 * 15 14 13 37 37 H 1.08998 * 109.19810 * 219.44815 * 17 16 11 38 38 H 1.09004 * 109.20790 * 100.16330 * 17 16 11 39 39 H 1.09002 * 109.46669 * 64.99750 * 20 18 9 40 40 H 1.08993 * 109.47328 * 184.99868 * 20 18 9 41 41 H 0.96996 * 120.00122 * 359.97438 * 21 20 18 42 42 H 1.08005 * 120.07404 * 359.97438 * 25 24 22 43 43 H 1.07994 * 119.92846 * 180.23084 * 26 25 24 44 44 H 1.08000 * 119.85091 * 179.71979 * 27 26 25 45 45 H 1.08007 * 119.93113 * 180.02562 * 28 27 26 46 46 H 1.08001 * 120.07429 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2023 0.0005 8 1 3.0756 -1.2108 -0.1766 9 7 1.3441 -2.3772 0.2256 10 6 0.1216 -2.4180 1.0353 11 6 0.1814 -3.5867 1.9865 12 6 -0.7681 -3.6481 2.9977 13 6 -0.7710 -4.6977 3.8929 14 6 0.1780 -5.6969 3.7806 15 6 1.1238 -5.6352 2.7788 16 6 1.1332 -4.5756 1.8796 17 6 2.2130 -4.5603 0.8299 18 6 1.8265 -3.6503 -0.3349 19 1 1.0359 -4.1180 -0.9216 20 6 3.0480 -3.3961 -1.2205 21 7 2.7115 -2.4022 -2.2429 22 6 3.6400 -2.0190 -3.1414 23 8 4.7565 -2.4982 -3.1038 24 6 3.3004 -1.0163 -4.1736 25 6 2.0174 -0.4691 -4.2237 26 6 1.7082 0.4693 -5.1866 27 6 2.6638 0.8605 -6.1076 28 6 3.9360 0.3184 -6.0664 29 6 4.2596 -0.6173 -5.1056 30 1 -0.4849 0.8401 -0.0004 31 1 0.0318 -1.4922 1.6034 32 1 -0.7433 -2.5268 0.3810 33 1 -1.5098 -2.8678 3.0842 34 1 -1.5111 -4.7386 4.6783 35 1 0.1784 -6.5238 4.4754 36 1 1.8640 -6.4170 2.6926 37 1 2.3656 -5.5734 0.4579 38 1 3.1403 -4.1992 1.2746 39 1 3.8694 -3.0238 -0.6082 40 1 3.3471 -4.3266 -1.7028 41 1 1.8205 -2.0200 -2.2731 42 1 1.2692 -0.7773 -3.5084 43 1 0.7170 0.8963 -5.2242 44 1 2.4153 1.5921 -6.8622 45 1 4.6775 0.6283 -6.7879 46 1 5.2530 -1.0400 -5.0748 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054029607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:39:12 Heat of formation + Delta-G solvation = 39.770432 kcal Electronic energy + Delta-G solvation = -28954.413772 eV Core-core repulsion = 25195.107966 eV Total energy + Delta-G solvation = -3759.305807 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 336.158 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.81574 -39.26886 -37.92499 -36.52016 -33.79382 -32.97214 -31.50043 -31.15878 -30.71977 -30.01662 -28.88700 -25.74944 -25.55785 -23.26066 -22.83344 -22.23696 -21.56843 -21.02920 -19.85267 -19.08694 -17.78648 -16.38330 -16.25135 -15.85624 -15.48578 -15.29931 -14.66517 -14.58918 -14.41495 -14.27486 -14.09966 -13.91467 -13.54610 -13.35469 -13.02263 -12.77366 -12.62419 -12.50904 -12.43022 -12.06798 -11.67472 -11.59919 -11.45607 -11.14672 -10.90307 -10.88014 -10.87158 -10.72933 -10.55449 -10.22215 -10.03742 -9.76445 -9.38504 -8.82848 -8.80192 -8.76896 -8.28984 -8.22499 -7.87383 -6.85419 -5.95914 -3.40128 1.12853 1.56080 1.84909 1.92519 3.29134 3.32392 3.35678 3.40484 3.79331 4.20586 4.26982 4.35440 5.01064 5.06458 5.11100 5.14609 5.19304 5.25499 5.34628 5.38894 5.45162 5.55361 5.58791 5.67936 5.71227 5.86932 5.92177 5.98884 6.02968 6.07101 6.15944 6.17237 6.28050 6.33132 6.53005 6.54786 6.59853 6.60502 6.63501 6.78785 6.92594 6.93740 7.04802 7.11200 7.12604 7.17037 7.47689 7.61394 7.69389 8.20937 8.25103 8.82591 9.03874 9.63060 10.21565 11.12672 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.014662 B = 0.003770 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.246987 B = 7425.295938 C = 8524.671114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.011 3.989 3 Si 0.893 3.107 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.248 4.248 8 H 0.071 0.929 9 N -0.588 5.588 10 C 0.207 3.793 11 C -0.077 4.077 12 C -0.123 4.123 13 C -0.130 4.130 14 C -0.140 4.140 15 C -0.127 4.127 16 C -0.068 4.068 17 C -0.090 4.090 18 C 0.157 3.843 19 H 0.043 0.957 20 C 0.136 3.864 21 N -0.686 5.686 22 C 0.550 3.450 23 O -0.563 6.563 24 C -0.125 4.125 25 C -0.075 4.075 26 C -0.129 4.129 27 C -0.104 4.104 28 C -0.136 4.136 29 C -0.067 4.067 30 H 0.256 0.744 31 H 0.097 0.903 32 H 0.042 0.958 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.416 0.584 42 H 0.135 0.865 43 H 0.126 0.874 44 H 0.121 0.879 45 H 0.124 0.876 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.182 -4.623 -4.301 6.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.188 4.188 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.312 5.312 10 C 0.082 3.918 11 C -0.079 4.079 12 C -0.142 4.142 13 C -0.149 4.149 14 C -0.158 4.158 15 C -0.146 4.146 16 C -0.068 4.068 17 C -0.130 4.130 18 C 0.050 3.950 19 H 0.060 0.940 20 C 0.012 3.988 21 N -0.337 5.337 22 C 0.337 3.663 23 O -0.445 6.445 24 C -0.128 4.128 25 C -0.094 4.094 26 C -0.147 4.147 27 C -0.122 4.122 28 C -0.154 4.154 29 C -0.086 4.086 30 H 0.067 0.933 31 H 0.115 0.885 32 H 0.060 0.940 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.255 0.745 42 H 0.153 0.847 43 H 0.144 0.856 44 H 0.139 0.861 45 H 0.142 0.858 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.469 -4.799 -4.263 6.436 hybrid contribution -0.089 1.170 0.355 1.225 sum 0.380 -3.629 -3.908 5.347 Atomic orbital electron populations 1.69947 1.04985 1.25847 1.54062 1.24996 0.95306 0.97958 1.00536 0.86496 0.79135 0.83555 0.78593 1.20477 1.21494 1.20976 1.19084 0.91360 0.83247 1.43973 0.91115 1.44022 1.28643 1.02210 1.56297 1.19782 0.88599 0.93109 0.90268 1.21016 0.93243 0.97202 0.96444 1.21117 0.99215 0.98409 0.95454 1.20951 0.99197 0.95219 0.99491 1.20849 0.96707 0.99175 0.99099 1.21126 0.99081 0.98435 0.95922 1.19480 0.96510 0.94006 0.96789 1.20879 0.96964 0.99481 0.95653 1.20726 0.93900 0.88701 0.91667 0.93974 1.21268 0.97750 0.90673 0.89136 1.45856 1.16015 1.42347 1.29456 1.18208 0.84791 0.81766 0.81526 1.90692 1.21630 1.57442 1.74688 1.20079 0.94994 0.99850 0.97883 1.21552 0.95783 0.94928 0.97150 1.21127 0.99885 0.98072 0.95607 1.21296 0.93522 0.98973 0.98403 1.21068 0.96867 0.98121 0.99368 1.21248 0.99200 0.95322 0.92813 0.93339 0.88539 0.93999 0.86479 0.87003 0.87129 0.87081 0.91832 0.90768 0.91417 0.92272 0.74482 0.84676 0.85588 0.86059 0.85828 0.85000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.03 11.07 55.49 0.61 -22.41 16 2 C 0.01 0.28 5.08 -17.43 -0.09 0.19 16 3 Si 0.89 20.74 29.57 -169.99 -5.03 15.72 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.25 -5.93 6.96 -15.06 -0.10 -6.04 16 8 H 0.07 1.77 6.19 -52.49 -0.32 1.45 16 9 N -0.59 -12.83 2.85 -166.39 -0.47 -13.30 16 10 C 0.21 4.51 4.80 -5.04 -0.02 4.49 16 11 C -0.08 -1.48 5.82 -104.55 -0.61 -2.09 16 12 C -0.12 -2.12 9.62 -39.46 -0.38 -2.50 16 13 C -0.13 -1.96 10.05 -39.68 -0.40 -2.36 16 14 C -0.14 -2.04 10.04 -39.69 -0.40 -2.44 16 15 C -0.13 -1.98 9.59 -39.43 -0.38 -2.36 16 16 C -0.07 -1.20 5.76 -104.61 -0.60 -1.80 16 17 C -0.09 -1.51 5.21 -28.05 -0.15 -1.66 16 18 C 0.16 2.91 3.02 -67.64 -0.20 2.71 16 19 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 20 C 0.14 2.48 4.45 -4.04 -0.02 2.47 16 21 N -0.69 -13.08 3.96 -61.25 -0.24 -13.32 16 22 C 0.55 10.80 7.77 -12.33 -0.10 10.70 16 23 O -0.56 -12.28 16.35 5.32 0.09 -12.20 16 24 C -0.13 -2.19 5.87 -104.97 -0.62 -2.81 16 25 C -0.08 -1.23 9.54 -39.18 -0.37 -1.60 16 26 C -0.13 -1.80 10.03 -39.64 -0.40 -2.20 16 27 C -0.10 -1.29 10.04 -39.49 -0.40 -1.68 16 28 C -0.14 -1.75 10.03 -39.64 -0.40 -2.15 16 29 C -0.07 -1.04 9.60 -39.19 -0.38 -1.41 16 30 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 31 H 0.10 2.36 6.46 -51.93 -0.34 2.03 16 32 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.12 1.88 8.05 -52.49 -0.42 1.46 16 34 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 36 H 0.11 1.47 8.05 -52.49 -0.42 1.04 16 37 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 38 H 0.07 1.28 8.01 -51.93 -0.42 0.86 16 39 H 0.07 1.34 7.31 -51.93 -0.38 0.96 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.42 8.14 5.38 -40.82 -0.22 7.92 16 42 H 0.14 2.28 6.41 -52.48 -0.34 1.94 16 43 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 44 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 45 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 46 H 0.13 1.99 7.65 -52.49 -0.40 1.59 16 LS Contribution 373.06 15.07 5.62 5.62 Total: -1.00 -27.87 373.06 -11.62 -39.49 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -6.20 Total: 12.94 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -6.01 Total: -12.54 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.10 Total: -49.03 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.09 Total: -12.20 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -27.87 -11.62 -39.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054029607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.260 kcal (2) G-P(sol) polarization free energy of solvation -27.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds