Wall clock time and date at job start Sat Apr 11 2020 04:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86808 * 119.99816 * 2 1 4 4 H 1.48500 * 109.47207 * 270.00061 * 3 2 1 5 5 H 1.48499 * 109.46724 * 30.00414 * 3 2 1 6 6 H 1.48504 * 109.46613 * 150.00041 * 3 2 1 7 7 C 1.38814 * 120.00295 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99709 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99733 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00113 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.94563 * 26.90562 * 10 9 7 12 12 C 1.53954 * 113.66160 * 255.50188 * 10 9 7 13 13 C 1.53956 * 87.28896 * 220.79131 * 12 10 9 14 14 H 1.09000 * 113.65953 * 139.30527 * 13 12 10 15 15 N 1.46505 * 113.66175 * 270.26137 * 13 12 10 16 16 C 1.34778 * 120.00106 * 255.49775 * 15 13 12 17 17 O 1.21285 * 119.99571 * 0.02562 * 16 15 13 18 18 C 1.50692 * 120.00017 * 179.97438 * 16 15 13 19 19 N 1.46504 * 109.47132 * 179.97438 * 18 16 15 20 20 C 1.34774 * 124.17596 * 90.00026 * 19 18 16 21 21 O 1.21228 * 127.15742 * 359.70583 * 20 19 18 22 22 C 1.51580 * 105.68343 * 179.97438 * 20 19 18 23 23 N 1.47315 * 103.59511 * 0.02562 * 22 20 19 24 24 C 1.33791 * 124.17870 * 269.96164 * 19 18 16 25 25 O 1.21532 * 123.77167 * 0.03185 * 24 19 18 26 26 C 1.52902 * 86.78460 * 24.73245 * 13 12 10 27 27 C 1.52904 * 121.14246 * 209.37652 * 26 13 12 28 28 C 1.53958 * 86.78663 * 209.38142 * 27 26 13 29 29 C 1.52918 * 121.13590 * 100.81655 * 26 13 12 30 30 H 0.96998 * 120.00113 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00021 * 0.02562 * 9 7 2 32 32 H 1.08997 * 113.57914 * 106.19421 * 12 10 9 33 33 H 1.08998 * 113.58061 * 335.39079 * 12 10 9 34 34 H 0.96996 * 119.99806 * 75.49696 * 15 13 12 35 35 H 1.08997 * 109.47056 * 60.00038 * 18 16 15 36 36 H 1.09000 * 109.47247 * 299.99866 * 18 16 15 37 37 H 1.09002 * 110.59530 * 118.52828 * 22 20 19 38 38 H 1.08991 * 110.60543 * 241.47524 * 22 20 19 39 39 H 0.96994 * 126.69054 * 179.97438 * 23 22 20 40 40 H 1.09004 * 113.66184 * 323.85292 * 27 26 13 41 41 H 1.09001 * 113.66493 * 94.90995 * 27 26 13 42 42 H 1.09002 * 113.57533 * 270.13660 * 28 27 26 43 43 H 1.08997 * 113.58384 * 139.34049 * 28 27 26 44 44 H 1.09000 * 113.66140 * 265.09728 * 29 26 13 45 45 H 1.09000 * 113.66231 * 36.14867 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 3.0458 -3.5773 0.4537 12 6 2.0613 -4.3684 -1.3657 13 6 1.8533 -5.6861 -0.5973 14 1 1.1459 -6.3640 -1.0749 15 7 3.1035 -6.3459 -0.2122 16 6 3.5263 -7.4341 -0.8856 17 8 2.8721 -7.8669 -1.8106 18 6 4.8125 -8.1123 -0.4898 19 7 5.0487 -9.2614 -1.3675 20 6 5.7333 -9.2004 -2.5268 21 8 6.2459 -8.2206 -3.0238 22 6 5.7232 -10.6103 -3.0833 23 7 4.9622 -11.3735 -2.0790 24 6 4.6123 -10.5010 -1.1167 25 8 3.9706 -10.8046 -0.1303 26 6 1.2381 -4.8389 0.5170 27 6 1.3186 -5.2771 1.9797 28 6 -0.0094 -4.5264 2.1875 29 6 -0.2782 -4.7356 0.6862 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3880 -0.0005 32 1 3.0184 -4.3125 -1.8843 33 1 1.2185 -4.0965 -2.0012 34 1 3.6268 -5.9994 0.5274 35 1 4.7406 -8.4532 0.5430 36 1 5.6386 -7.4075 -0.5832 37 1 5.2181 -10.6378 -4.0489 38 1 6.7389 -10.9959 -3.1696 39 1 4.7544 -12.3205 -2.1061 40 1 1.2380 -6.3552 2.1185 41 1 2.1575 -4.8404 2.5217 42 1 0.1201 -3.4804 2.4657 43 1 -0.7115 -5.0530 2.8338 44 1 -0.7150 -3.8663 0.1947 45 1 -0.8076 -5.6615 0.4614 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078802521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:37:55 Heat of formation + Delta-G solvation = -8.506708 kcal Electronic energy + Delta-G solvation = -29484.394993 eV Core-core repulsion = 25312.146469 eV Total energy + Delta-G solvation = -4172.248524 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.68045 -40.62160 -38.98122 -38.85990 -36.41310 -35.17550 -34.83052 -34.07680 -32.35804 -30.08485 -28.88893 -27.81132 -25.46380 -24.67520 -24.13202 -23.26969 -22.54786 -21.57758 -20.50893 -20.02167 -18.46446 -18.13533 -17.85689 -17.21643 -16.93399 -16.62796 -16.17360 -15.63556 -15.59082 -15.16552 -14.98566 -14.81250 -14.50559 -14.42422 -14.28379 -13.85380 -13.60549 -13.35511 -12.85871 -12.56976 -12.36020 -12.00717 -11.75661 -11.70424 -11.37747 -11.32948 -10.89891 -10.82557 -10.75247 -10.62245 -10.60028 -10.17755 -10.13663 -9.94056 -9.85365 -9.74526 -9.58749 -9.39718 -8.85611 -8.74455 -6.98047 -5.80679 -3.09206 1.31023 1.71078 2.50355 2.59758 2.76500 3.19601 3.41561 3.46988 3.48299 3.61923 4.35848 4.51978 4.56276 4.57831 4.72082 4.77861 4.83215 4.99962 5.05200 5.09581 5.20542 5.25702 5.27748 5.44325 5.68791 5.82099 5.94897 6.01120 6.05346 6.10669 6.15450 6.30456 6.35049 6.41269 6.46909 6.56888 6.64163 6.64576 6.87319 6.92167 7.00196 7.05073 7.48849 7.67341 7.75478 8.15088 8.38113 9.49771 10.06952 10.41765 11.41604 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.018002 B = 0.002664 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.004458 B =10506.541744 C =11542.139034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.708 5.708 10 C 0.192 3.808 11 H 0.075 0.925 12 C -0.174 4.174 13 C 0.130 3.870 14 H 0.094 0.906 15 N -0.697 5.697 16 C 0.502 3.498 17 O -0.534 6.534 18 C 0.099 3.901 19 N -0.561 5.561 20 C 0.525 3.475 21 O -0.463 6.463 22 C 0.066 3.934 23 N -0.728 5.728 24 C 0.708 3.292 25 O -0.540 6.540 26 C -0.119 4.119 27 C -0.127 4.127 28 C -0.131 4.131 29 C -0.110 4.110 30 H 0.256 0.744 31 H 0.387 0.613 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.402 0.598 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.442 0.558 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.057 0.943 44 H 0.079 0.921 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.153 -23.454 -1.184 25.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.347 5.347 10 C 0.079 3.921 11 H 0.093 0.907 12 C -0.216 4.216 13 C 0.025 3.975 14 H 0.112 0.888 15 N -0.347 5.347 16 C 0.286 3.714 17 O -0.410 6.410 18 C -0.026 4.026 19 N -0.307 5.307 20 C 0.312 3.688 21 O -0.332 6.332 22 C -0.062 4.062 23 N -0.393 5.393 24 C 0.408 3.592 25 O -0.413 6.413 26 C -0.122 4.122 27 C -0.164 4.164 28 C -0.169 4.169 29 C -0.148 4.148 30 H 0.066 0.934 31 H 0.223 0.777 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.236 0.764 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.286 0.714 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.076 0.924 44 H 0.098 0.902 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.720 -23.094 -1.529 25.507 hybrid contribution 0.276 0.731 0.157 0.797 sum 10.996 -22.363 -1.372 24.958 Atomic orbital electron populations 1.69650 1.05106 1.25765 1.57400 1.24742 0.95493 0.97708 1.02775 0.86208 0.78656 0.83878 0.77538 1.21715 1.21797 1.20765 1.19270 0.91039 0.84173 1.42991 0.91172 1.42398 1.05915 0.99551 1.86876 1.21282 0.94067 0.84548 0.92164 0.90727 1.24277 1.01876 0.95094 1.00377 1.21741 0.85055 0.93371 0.97322 0.88815 1.45482 1.24988 1.28782 1.35412 1.20614 0.86986 0.80764 0.83028 1.90717 1.56808 1.64517 1.28971 1.21479 0.98024 0.87418 0.95693 1.45800 1.51470 1.09765 1.23668 1.20900 0.76675 0.91187 0.80061 1.90854 1.43568 1.36875 1.61864 1.22451 1.00237 0.88646 0.94830 1.45341 1.59205 1.11917 1.22854 1.15751 0.79283 0.80574 0.83552 1.91029 1.41834 1.79497 1.28920 1.23536 0.97488 0.97935 0.93220 1.22660 0.98615 0.99281 0.95865 1.22744 0.96594 1.01457 0.96063 1.22463 0.93639 1.01792 0.96925 0.93438 0.77676 0.92261 0.89568 0.76352 0.85451 0.85527 0.85698 0.85768 0.71379 0.90834 0.91630 0.89166 0.92420 0.90227 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.52 13.06 55.49 0.72 -26.79 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.24 -6.56 9.98 -15.06 -0.15 -6.71 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.71 -16.95 5.35 -52.99 -0.28 -17.24 16 10 C 0.19 3.62 4.28 -67.48 -0.29 3.33 16 11 H 0.07 1.38 8.12 -51.93 -0.42 0.95 16 12 C -0.17 -3.12 7.68 -25.74 -0.20 -3.32 16 13 C 0.13 2.01 4.08 -67.48 -0.28 1.74 16 14 H 0.09 1.58 7.54 -51.93 -0.39 1.19 16 15 N -0.70 -8.85 5.07 -53.37 -0.27 -9.13 16 16 C 0.50 6.81 7.90 -10.99 -0.09 6.73 16 17 O -0.53 -9.41 16.07 5.55 0.09 -9.32 16 18 C 0.10 0.96 6.18 -5.20 -0.03 0.93 16 19 N -0.56 -5.79 2.09 -122.03 -0.26 -6.05 16 20 C 0.52 4.99 8.32 -10.55 -0.09 4.90 16 21 O -0.46 -5.84 17.76 5.60 0.10 -5.74 16 22 C 0.07 0.31 7.97 -4.32 -0.03 0.27 16 23 N -0.73 -4.39 6.58 -65.74 -0.43 -4.82 16 24 C 0.71 7.49 8.62 -88.02 -0.76 6.73 16 25 O -0.54 -7.61 17.48 5.34 0.09 -7.51 16 26 C -0.12 -1.88 0.91 -154.72 -0.14 -2.02 16 27 C -0.13 -1.76 7.43 -26.28 -0.20 -1.95 16 28 C -0.13 -2.01 8.08 -25.75 -0.21 -2.21 16 29 C -0.11 -1.77 7.45 -26.28 -0.20 -1.96 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.39 9.83 5.86 -40.82 -0.24 9.59 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 34 H 0.40 4.07 8.54 -40.82 -0.35 3.72 16 35 H 0.13 0.98 7.86 -51.93 -0.41 0.57 16 36 H 0.13 0.95 8.01 -51.93 -0.42 0.54 16 37 H 0.13 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.12 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.44 1.50 8.96 -40.82 -0.37 1.13 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.08 1.46 6.42 -51.93 -0.33 1.13 16 45 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 379.45 15.07 5.72 5.72 Total: -1.00 -36.89 379.45 -8.56 -45.45 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -6.27 Total: 12.32 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -2.75 Total: 6.06 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: -0.52 Total: -64.02 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: 0.28 Total: -22.57 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.89 -8.56 -45.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078802521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.946 kcal (2) G-P(sol) polarization free energy of solvation -36.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds