Wall clock time and date at job start Sat Apr 11 2020 04:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99583 * 2 1 4 4 H 1.48506 * 109.46876 * 269.99794 * 3 2 1 5 5 H 1.48496 * 109.47311 * 29.99752 * 3 2 1 6 6 H 1.48490 * 109.47145 * 150.00120 * 3 2 1 7 7 C 1.38807 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00129 * 359.97438 * 7 2 1 9 9 N 1.36937 * 120.00023 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99990 * 179.97438 * 9 7 2 11 11 C 1.53044 * 109.46002 * 204.99521 * 10 9 7 12 12 C 1.53191 * 109.31440 * 178.62636 * 11 10 9 13 13 N 1.46926 * 108.89109 * 54.56430 * 12 11 10 14 14 C 1.34780 * 120.62730 * 126.46248 * 13 12 11 15 15 O 1.21276 * 120.00248 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99585 * 180.02562 * 14 13 12 17 17 C 1.53002 * 109.46946 * 179.97438 * 16 14 13 18 18 O 1.42903 * 109.46983 * 179.97438 * 17 16 14 19 19 C 1.35901 * 116.99451 * 180.02562 * 18 17 16 20 20 C 1.38761 * 120.04931 * 359.72419 * 19 18 17 21 21 C 1.38129 * 119.99953 * 179.74610 * 20 19 18 22 22 C 1.38259 * 120.07597 * 0.53350 * 21 20 19 23 23 C 1.38468 * 120.08448 * 359.74499 * 22 21 20 24 24 F 1.35098 * 119.99535 * 179.97438 * 23 22 21 25 25 C 1.38389 * 120.00779 * 359.97438 * 23 22 21 26 26 C 1.46957 * 118.71783 * 306.64359 * 13 12 11 27 27 C 1.53040 * 109.44874 * 84.93573 * 10 9 7 28 28 H 0.96996 * 120.00692 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99680 * 359.97438 * 9 7 2 30 30 H 1.08994 * 109.46315 * 324.96949 * 10 9 7 31 31 H 1.09003 * 109.49852 * 58.67901 * 11 10 9 32 32 H 1.09001 * 109.52587 * 298.59862 * 11 10 9 33 33 H 1.09002 * 109.58786 * 174.42474 * 12 11 10 34 34 H 1.08996 * 109.58870 * 294.70753 * 12 11 10 35 35 H 1.09002 * 109.47438 * 299.99718 * 16 14 13 36 36 H 1.08999 * 109.47522 * 60.00065 * 16 14 13 37 37 H 1.08997 * 109.47578 * 300.00111 * 17 16 14 38 38 H 1.09002 * 109.46912 * 60.00365 * 17 16 14 39 39 H 1.08006 * 119.99680 * 0.02562 * 20 19 18 40 40 H 1.07995 * 119.96498 * 180.27853 * 21 20 19 41 41 H 1.08000 * 119.95491 * 179.76691 * 22 21 20 42 42 H 1.07997 * 120.03962 * 180.02562 * 25 23 22 43 43 H 1.09001 * 109.46843 * 293.57352 * 26 13 12 44 44 H 1.08997 * 109.71602 * 173.28846 * 26 13 12 45 45 H 1.08995 * 109.49643 * 301.32838 * 27 10 9 46 46 H 1.08996 * 109.49892 * 61.43032 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1122 -2.4707 0.0000 11 6 5.4995 -2.2584 0.6103 12 6 6.2497 -3.5937 0.6401 13 7 6.2673 -4.1599 -0.7156 14 6 7.4297 -4.5229 -1.2931 15 8 8.4744 -4.3838 -0.6930 16 6 7.4312 -5.1016 -2.6845 17 6 8.8675 -5.4257 -3.1005 18 8 8.8689 -5.9750 -4.4197 19 6 10.0747 -6.3201 -4.9430 20 6 11.2333 -6.1285 -4.2039 21 6 12.4579 -6.4845 -4.7346 22 6 12.5320 -7.0217 -6.0064 23 6 11.3785 -7.2090 -6.7491 24 9 11.4531 -7.7336 -7.9919 25 6 10.1492 -6.8590 -6.2186 26 6 4.9934 -4.3188 -1.4309 27 6 4.2573 -2.9753 -1.4375 28 1 -0.4851 0.8400 0.0004 29 1 3.8646 -0.3619 0.0004 30 1 3.5648 -3.2061 0.5895 31 1 5.3957 -1.8768 1.6261 32 1 6.0569 -1.5413 0.0075 33 1 7.2720 -3.4310 0.9814 34 1 5.7438 -4.2820 1.3170 35 1 6.8337 -6.0132 -2.6996 36 1 7.0066 -4.3774 -3.3798 37 1 9.4646 -4.5140 -3.0856 38 1 9.2924 -6.1498 -2.4054 39 1 11.1772 -5.7051 -3.2118 40 1 13.3589 -6.3393 -4.1572 41 1 13.4909 -7.2959 -6.4210 42 1 9.2492 -7.0053 -6.7972 43 1 4.3835 -5.0671 -0.9249 44 1 5.1845 -4.6358 -2.4561 45 1 3.2692 -3.1040 -1.8793 46 1 4.8260 -2.2518 -2.0215 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200901607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:39:53 Heat of formation + Delta-G solvation = -80.931620 kcal Electronic energy + Delta-G solvation = -27838.232024 eV Core-core repulsion = 23642.922959 eV Total energy + Delta-G solvation = -4195.309065 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.30910 -40.68542 -40.11703 -37.88796 -37.45007 -34.73385 -32.91131 -32.02695 -31.23560 -30.72243 -30.03013 -29.72449 -25.79414 -24.49458 -23.35108 -23.10202 -22.48807 -21.84540 -20.39487 -19.26363 -18.83633 -17.64885 -17.26636 -16.94318 -16.79980 -16.55664 -16.27888 -15.97810 -15.67760 -15.28350 -14.91793 -14.75343 -14.19243 -14.14712 -13.88538 -13.87065 -13.47203 -13.31001 -13.16819 -12.86134 -12.64171 -12.48022 -12.20017 -12.11842 -12.02406 -11.95472 -11.36532 -11.16179 -11.10867 -11.08181 -10.97709 -10.64063 -10.31692 -9.98529 -9.94831 -9.65656 -9.32601 -9.00236 -8.74104 -8.69490 -7.35769 -5.83936 -3.20302 0.69229 0.84979 2.36401 2.44419 3.09368 3.15440 3.32445 3.35656 3.41009 3.92254 4.22750 4.34502 4.50332 4.52838 4.54561 4.56226 4.63404 4.84883 4.89410 4.94543 5.00189 5.06232 5.15497 5.24507 5.33731 5.36981 5.40507 5.49062 5.51868 5.55683 5.64180 5.75958 5.78331 5.82724 5.89349 6.00628 6.06792 6.17356 6.27219 6.28949 6.41634 6.70194 6.84590 6.89495 7.29468 7.91013 7.98186 8.34967 9.12882 9.85710 10.05067 11.34088 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.021873 B = 0.001823 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.786866 B =15355.053034 C =15828.884843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.748 5.748 10 C 0.183 3.817 11 C -0.143 4.143 12 C 0.116 3.884 13 N -0.603 5.603 14 C 0.521 3.479 15 O -0.552 6.552 16 C -0.141 4.141 17 C 0.075 3.925 18 O -0.312 6.312 19 C 0.165 3.835 20 C -0.218 4.218 21 C -0.050 4.050 22 C -0.195 4.195 23 C 0.137 3.863 24 F -0.135 7.135 25 C -0.192 4.192 26 C 0.104 3.896 27 C -0.152 4.152 28 H 0.260 0.740 29 H 0.361 0.639 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.144 0.856 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.193 -15.367 -8.945 29.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.108 0.892 9 N -0.390 5.390 10 C 0.073 3.927 11 C -0.182 4.182 12 C -0.006 4.006 13 N -0.336 5.336 14 C 0.309 3.691 15 O -0.431 6.431 16 C -0.181 4.181 17 C 0.000 4.000 18 O -0.225 6.225 19 C 0.119 3.881 20 C -0.237 4.237 21 C -0.068 4.068 22 C -0.214 4.214 23 C 0.118 3.882 24 F -0.113 7.113 25 C -0.211 4.211 26 C -0.019 4.019 27 C -0.193 4.193 28 H 0.070 0.930 29 H 0.194 0.806 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.157 0.843 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.162 0.838 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 23.251 -15.369 -8.722 29.204 hybrid contribution 0.454 1.289 -0.181 1.378 sum 23.705 -14.080 -8.903 28.973 Atomic orbital electron populations 1.69694 1.05104 1.25912 1.57247 1.24679 0.95224 0.97240 1.01886 0.86560 0.79205 0.85014 0.77779 1.21109 1.21719 1.20353 1.19054 0.80505 0.94690 1.43354 0.89152 1.42793 1.04033 1.01948 1.90219 1.20144 0.90205 0.89490 0.92851 1.22251 0.97203 0.96400 1.02317 1.21618 1.02065 0.94736 0.82207 1.48160 1.06654 1.61722 1.17025 1.20145 0.83479 0.78025 0.87419 1.90691 1.31158 1.55951 1.65302 1.21507 0.97406 1.03972 0.95220 1.22523 0.97390 0.99210 0.80899 1.85994 1.27113 1.76906 1.32477 1.18568 0.84562 0.93077 0.91904 1.21456 0.92296 1.07760 1.02197 1.20818 0.97581 0.94400 0.93982 1.21067 0.97770 1.06416 0.96127 1.17280 0.93744 0.96785 0.80430 1.91521 1.97105 1.83878 1.38841 1.20268 0.97920 1.07356 0.95584 1.21944 0.83919 0.99359 0.96681 1.22649 1.00628 0.94684 1.01358 0.93002 0.80631 0.92460 0.90382 0.91936 0.89230 0.91210 0.87539 0.87413 0.90703 0.90733 0.84342 0.84567 0.84607 0.83813 0.90963 0.90091 0.89938 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.49 13.97 55.49 0.78 -27.71 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 21.57 27.74 -169.99 -4.71 16.85 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.37 6.52 56.52 0.37 -6.01 16 7 C -0.25 -6.60 10.41 -15.06 -0.16 -6.75 16 8 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 9 N -0.75 -16.60 4.92 -53.39 -0.26 -16.86 16 10 C 0.18 3.14 2.73 -67.89 -0.19 2.96 16 11 C -0.14 -2.06 5.55 -26.61 -0.15 -2.21 16 12 C 0.12 1.45 6.43 -3.71 -0.02 1.42 16 13 N -0.60 -7.15 2.98 -172.74 -0.51 -7.67 16 14 C 0.52 6.17 7.70 -10.98 -0.08 6.09 16 15 O -0.55 -8.10 15.39 5.56 0.09 -8.02 16 16 C -0.14 -1.23 4.42 -27.88 -0.12 -1.35 16 17 C 0.08 0.67 4.03 37.16 0.15 0.82 16 18 O -0.31 -3.00 10.14 -19.43 -0.20 -3.20 16 19 C 0.17 1.54 6.68 -39.23 -0.26 1.27 16 20 C -0.22 -1.76 9.04 -39.43 -0.36 -2.11 16 21 C -0.05 -0.34 10.04 -39.61 -0.40 -0.74 16 22 C -0.19 -1.43 10.02 -39.49 -0.40 -1.82 16 23 C 0.14 1.20 7.30 -39.44 -0.29 0.92 16 24 F -0.13 -1.27 17.27 2.25 0.04 -1.23 16 25 C -0.19 -1.73 9.97 -39.36 -0.39 -2.13 16 26 C 0.10 1.14 6.33 -3.69 -0.02 1.11 16 27 C -0.15 -2.24 5.66 -26.61 -0.15 -2.39 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.36 8.02 5.66 -40.82 -0.23 7.79 16 30 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.09 1.15 7.01 -51.93 -0.36 0.79 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.11 0.76 7.95 -51.93 -0.41 0.35 16 36 H 0.11 0.86 7.69 -51.93 -0.40 0.46 16 37 H 0.07 0.68 7.61 -51.93 -0.40 0.29 16 38 H 0.07 0.65 7.63 -51.93 -0.40 0.25 16 39 H 0.14 1.00 6.30 -52.48 -0.33 0.67 16 40 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 41 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 0.69 5.95 -51.93 -0.31 0.38 16 45 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 378.21 15.07 5.70 5.70 Total: -1.00 -32.15 378.21 -8.68 -40.82 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -6.65 Total: 6.16 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -2.93 Total: -4.85 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: 0.00 Total: -52.24 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: -0.11 Total: -11.21 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.71 Total: 16.85 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.15 -8.68 -40.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200901607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.108 kcal (2) G-P(sol) polarization free energy of solvation -32.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds