Wall clock time and date at job start Sat Apr 11 2020 04:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99583 * 2 1 4 4 H 1.48506 * 109.46876 * 269.99794 * 3 2 1 5 5 H 1.48496 * 109.47311 * 29.99752 * 3 2 1 6 6 H 1.48490 * 109.47145 * 150.00120 * 3 2 1 7 7 C 1.38807 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00129 * 359.97438 * 7 2 1 9 9 N 1.36937 * 120.00023 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99990 * 179.97438 * 9 7 2 11 11 C 1.53044 * 109.46002 * 204.99521 * 10 9 7 12 12 C 1.53191 * 109.31440 * 178.62636 * 11 10 9 13 13 N 1.46926 * 108.89109 * 54.56430 * 12 11 10 14 14 C 1.34780 * 120.62730 * 126.46248 * 13 12 11 15 15 O 1.21276 * 120.00248 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99585 * 180.02562 * 14 13 12 17 17 C 1.53002 * 109.46946 * 179.97438 * 16 14 13 18 18 O 1.42903 * 109.46983 * 179.97438 * 17 16 14 19 19 C 1.35901 * 116.99451 * 180.02562 * 18 17 16 20 20 C 1.38761 * 120.04931 * 359.72419 * 19 18 17 21 21 C 1.38129 * 119.99953 * 179.74610 * 20 19 18 22 22 C 1.38259 * 120.07597 * 0.53350 * 21 20 19 23 23 C 1.38468 * 120.08448 * 359.74499 * 22 21 20 24 24 F 1.35098 * 119.99535 * 179.97438 * 23 22 21 25 25 C 1.38389 * 120.00779 * 359.97438 * 23 22 21 26 26 C 1.46957 * 118.71783 * 306.64359 * 13 12 11 27 27 C 1.53040 * 109.44874 * 84.93573 * 10 9 7 28 28 H 0.96996 * 120.00692 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99680 * 359.97438 * 9 7 2 30 30 H 1.08994 * 109.46315 * 324.96949 * 10 9 7 31 31 H 1.09003 * 109.49852 * 58.67901 * 11 10 9 32 32 H 1.09001 * 109.52587 * 298.59862 * 11 10 9 33 33 H 1.09002 * 109.58786 * 174.42474 * 12 11 10 34 34 H 1.08996 * 109.58870 * 294.70753 * 12 11 10 35 35 H 1.09002 * 109.47438 * 299.99718 * 16 14 13 36 36 H 1.08999 * 109.47522 * 60.00065 * 16 14 13 37 37 H 1.08997 * 109.47578 * 300.00111 * 17 16 14 38 38 H 1.09002 * 109.46912 * 60.00365 * 17 16 14 39 39 H 1.08006 * 119.99680 * 0.02562 * 20 19 18 40 40 H 1.07995 * 119.96498 * 180.27853 * 21 20 19 41 41 H 1.08000 * 119.95491 * 179.76691 * 22 21 20 42 42 H 1.07997 * 120.03962 * 180.02562 * 25 23 22 43 43 H 1.09001 * 109.46843 * 293.57352 * 26 13 12 44 44 H 1.08997 * 109.71602 * 173.28846 * 26 13 12 45 45 H 1.08995 * 109.49643 * 301.32838 * 27 10 9 46 46 H 1.08996 * 109.49892 * 61.43032 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1122 -2.4707 0.0000 11 6 5.4995 -2.2584 0.6103 12 6 6.2497 -3.5937 0.6401 13 7 6.2673 -4.1599 -0.7156 14 6 7.4297 -4.5229 -1.2931 15 8 8.4744 -4.3838 -0.6930 16 6 7.4312 -5.1016 -2.6845 17 6 8.8675 -5.4257 -3.1005 18 8 8.8689 -5.9750 -4.4197 19 6 10.0747 -6.3201 -4.9430 20 6 11.2333 -6.1285 -4.2039 21 6 12.4579 -6.4845 -4.7346 22 6 12.5320 -7.0217 -6.0064 23 6 11.3785 -7.2090 -6.7491 24 9 11.4531 -7.7336 -7.9919 25 6 10.1492 -6.8590 -6.2186 26 6 4.9934 -4.3188 -1.4309 27 6 4.2573 -2.9753 -1.4375 28 1 -0.4851 0.8400 0.0004 29 1 3.8646 -0.3619 0.0004 30 1 3.5648 -3.2061 0.5895 31 1 5.3957 -1.8768 1.6261 32 1 6.0569 -1.5413 0.0075 33 1 7.2720 -3.4310 0.9814 34 1 5.7438 -4.2820 1.3170 35 1 6.8337 -6.0132 -2.6996 36 1 7.0066 -4.3774 -3.3798 37 1 9.4646 -4.5140 -3.0856 38 1 9.2924 -6.1498 -2.4054 39 1 11.1772 -5.7051 -3.2118 40 1 13.3589 -6.3393 -4.1572 41 1 13.4909 -7.2959 -6.4210 42 1 9.2492 -7.0053 -6.7972 43 1 4.3835 -5.0671 -0.9249 44 1 5.1845 -4.6358 -2.4561 45 1 3.2692 -3.1040 -1.8793 46 1 4.8260 -2.2518 -2.0215 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200901607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:39:52 Heat of formation + Delta-G solvation = -100.149387 kcal Electronic energy + Delta-G solvation = -27839.065369 eV Core-core repulsion = 23642.922959 eV Total energy + Delta-G solvation = -4196.142410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.98178 -41.47537 -40.94127 -38.91736 -38.25186 -36.25580 -34.07570 -33.43589 -32.09531 -31.59897 -31.38617 -30.53232 -26.95564 -25.62301 -24.30973 -24.00334 -23.68083 -22.73401 -21.65474 -20.23037 -19.76073 -19.31385 -18.19978 -17.62238 -17.51423 -17.17673 -17.04892 -16.71807 -16.67751 -16.51350 -16.16303 -15.87997 -15.42038 -15.02710 -14.99742 -14.76278 -14.73175 -14.45175 -14.27248 -13.85734 -13.76007 -13.52825 -13.29154 -13.06823 -12.93199 -12.80409 -12.67575 -12.60571 -12.18690 -12.06763 -12.03425 -11.93890 -11.78269 -11.77955 -11.32795 -11.04412 -10.83530 -9.94147 -9.70994 -9.35861 -9.30025 -8.01074 -5.33918 0.07919 0.25241 1.38210 1.40068 1.47549 1.52811 1.62500 2.26333 2.48765 2.55586 3.29777 3.30676 3.48491 3.55362 3.68146 3.82580 3.91456 3.94763 3.97056 4.05644 4.09128 4.17039 4.22815 4.30930 4.38451 4.40396 4.42359 4.61211 4.67956 4.72450 4.78234 4.82956 4.85587 4.97519 5.01488 5.05945 5.07168 5.19780 5.27687 5.32527 5.47191 5.60516 5.68061 5.79392 6.23130 6.24725 6.36910 7.06278 7.09263 7.86291 8.03811 9.20159 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.021873 B = 0.001823 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.786866 B =15355.053034 C =15828.884843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.065 4.065 3 Si 0.951 3.049 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.254 1.254 7 C -0.223 4.223 8 H 0.062 0.938 9 N -0.753 5.753 10 C 0.173 3.827 11 C -0.132 4.132 12 C 0.121 3.879 13 N -0.605 5.605 14 C 0.522 3.478 15 O -0.582 6.582 16 C -0.135 4.135 17 C 0.078 3.922 18 O -0.319 6.319 19 C 0.148 3.852 20 C -0.222 4.222 21 C -0.047 4.047 22 C -0.192 4.192 23 C 0.121 3.879 24 F -0.142 7.142 25 C -0.203 4.203 26 C 0.113 3.887 27 C -0.144 4.144 28 H 0.256 0.744 29 H 0.363 0.637 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.146 0.854 40 H 0.165 0.835 41 H 0.156 0.844 42 H 0.145 0.855 43 H 0.085 0.915 44 H 0.113 0.887 45 H 0.063 0.937 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.842 -16.015 -9.258 31.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.256 4.256 3 Si 0.779 3.221 4 H -0.208 1.208 5 H -0.226 1.226 6 H -0.178 1.178 7 C -0.354 4.354 8 H 0.080 0.920 9 N -0.396 5.396 10 C 0.066 3.934 11 C -0.170 4.170 12 C -0.002 4.002 13 N -0.337 5.337 14 C 0.311 3.689 15 O -0.463 6.463 16 C -0.175 4.175 17 C 0.003 3.997 18 O -0.233 6.233 19 C 0.102 3.898 20 C -0.241 4.241 21 C -0.065 4.065 22 C -0.211 4.211 23 C 0.102 3.898 24 F -0.121 7.121 25 C -0.223 4.223 26 C -0.010 4.010 27 C -0.185 4.185 28 H 0.065 0.935 29 H 0.195 0.805 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.146 0.854 36 H 0.138 0.862 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.163 0.837 40 H 0.183 0.817 41 H 0.174 0.826 42 H 0.163 0.837 43 H 0.103 0.897 44 H 0.131 0.869 45 H 0.082 0.918 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 25.957 -16.061 -9.045 31.836 hybrid contribution -0.326 1.376 -0.075 1.416 sum 25.631 -14.685 -9.120 30.916 Atomic orbital electron populations 1.69869 1.07024 1.26481 1.60047 1.25450 0.96025 1.01029 1.03125 0.85470 0.78622 0.80153 0.77869 1.20785 1.22631 1.17838 1.19030 0.82530 0.93388 1.40471 0.92015 1.42853 1.02489 1.03976 1.90266 1.20434 0.91103 0.87256 0.94646 1.22111 0.95361 0.97688 1.01885 1.21527 1.01698 0.93854 0.83093 1.48206 1.07061 1.61629 1.16796 1.20605 0.82740 0.77320 0.88197 1.90683 1.32149 1.57165 1.66282 1.21492 0.97747 1.05018 0.93219 1.22474 0.97531 0.98993 0.80752 1.85960 1.27487 1.77162 1.32684 1.18725 0.84908 0.93940 0.92239 1.21651 0.92441 1.07570 1.02449 1.21168 0.98189 0.93225 0.93875 1.21363 0.98104 1.05513 0.96140 1.17493 0.94333 0.97516 0.80479 1.91499 1.97154 1.84100 1.39340 1.20369 0.98291 1.07774 0.95829 1.21938 0.83251 0.97082 0.98733 1.22446 1.00262 0.96897 0.98904 0.93506 0.80452 0.93253 0.90424 0.92256 0.89349 0.89928 0.85388 0.86195 0.91211 0.90714 0.83659 0.81723 0.82616 0.83705 0.89723 0.86922 0.91806 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.77 13.97 21.65 0.30 -61.47 16 2 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 3 Si 0.95 44.70 27.74 68.60 1.90 46.60 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 6 H -0.25 -10.77 6.52 99.48 0.65 -10.12 16 7 C -0.22 -12.09 10.41 84.03 0.87 -11.22 16 8 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 9 N -0.75 -32.89 4.92 -322.82 -1.59 -34.48 16 10 C 0.17 5.77 2.73 45.02 0.12 5.89 16 11 C -0.13 -3.57 5.55 30.67 0.17 -3.40 16 12 C 0.12 2.75 6.43 86.36 0.56 3.30 16 13 N -0.60 -12.70 2.98 -818.82 -2.44 -15.14 16 14 C 0.52 11.00 7.70 87.66 0.67 11.67 16 15 O -0.58 -15.97 15.39 -3.02 -0.05 -16.01 16 16 C -0.14 -1.96 4.42 29.85 0.13 -1.82 16 17 C 0.08 1.24 4.03 71.98 0.29 1.53 16 18 O -0.32 -5.67 10.14 -92.44 -0.94 -6.61 16 19 C 0.15 2.59 6.68 22.50 0.15 2.74 16 20 C -0.22 -3.21 9.04 22.37 0.20 -3.01 16 21 C -0.05 -0.53 10.04 22.25 0.22 -0.30 16 22 C -0.19 -2.44 10.02 22.33 0.22 -2.22 16 23 C 0.12 2.02 7.30 22.36 0.16 2.18 16 24 F -0.14 -2.60 17.27 44.97 0.78 -1.82 16 25 C -0.20 -3.55 9.97 22.41 0.22 -3.33 16 26 C 0.11 2.13 6.33 86.36 0.55 2.68 16 27 C -0.14 -4.03 5.66 30.67 0.17 -3.86 16 28 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 29 H 0.36 15.53 5.66 -92.71 -0.52 15.01 16 30 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.09 2.09 7.01 -2.39 -0.02 2.08 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.13 1.34 7.95 -2.39 -0.02 1.32 16 36 H 0.12 1.50 7.69 -2.39 -0.02 1.48 16 37 H 0.07 1.17 7.61 -2.39 -0.02 1.15 16 38 H 0.07 1.17 7.63 -2.39 -0.02 1.16 16 39 H 0.15 1.84 6.30 -2.91 -0.02 1.82 16 40 H 0.17 0.86 8.06 -2.91 -0.02 0.83 16 41 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 42 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 43 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 44 H 0.11 1.48 5.95 -2.39 -0.01 1.47 16 45 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -70.73 378.21 3.58 -67.15 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.41 Total: 24.21 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: 5.19 Total: -2.42 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -3.73 Total: -111.10 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.98 Total: -22.62 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.78 Total: -1.82 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.90 Total: 46.60 kcal Total: -70.73 3.58 -67.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200901607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.998 kcal (2) G-P(sol) polarization free energy of solvation -70.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds