Wall clock time and date at job start Sat Apr 11 2020 04:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99752 * 2 1 4 4 H 1.48499 * 109.46944 * 270.00054 * 3 2 1 5 5 H 1.48497 * 109.47239 * 30.00488 * 3 2 1 6 6 H 1.48503 * 109.46804 * 150.00287 * 3 2 1 7 7 C 1.38813 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00196 * 359.97438 * 7 2 1 9 9 N 1.36941 * 120.00075 * 179.97438 * 7 2 1 10 10 C 1.46492 * 120.00135 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.91184 * 34.65900 * 10 9 7 12 12 C 1.53872 * 109.91964 * 273.54454 * 10 9 7 13 13 C 1.54132 * 106.53977 * 242.11876 * 12 10 9 14 14 C 1.54923 * 104.59340 * 335.56322 * 13 12 10 15 15 H 1.09005 * 113.69525 * 273.66216 * 14 13 12 16 16 C 1.54210 * 108.06244 * 145.41643 * 14 13 12 17 17 N 1.46906 * 107.63103 * 272.95599 * 16 14 13 18 18 C 1.34783 * 125.61591 * 181.50134 * 17 16 14 19 19 O 1.21282 * 119.99614 * 180.02562 * 18 17 16 20 20 C 1.50693 * 120.00014 * 0.02562 * 18 17 16 21 21 N 1.46501 * 109.46968 * 180.02562 * 20 18 17 22 22 C 1.34766 * 124.17693 * 269.72354 * 21 20 18 23 23 O 1.21238 * 127.15910 * 0.02562 * 22 21 20 24 24 C 1.51586 * 105.68390 * 179.97438 * 22 21 20 25 25 N 1.47309 * 103.59422 * 0.32448 * 24 22 21 26 26 C 1.33789 * 124.17642 * 90.02916 * 21 20 18 27 27 O 1.21538 * 123.77347 * 359.95479 * 26 21 20 28 28 C 1.47337 * 108.76806 * 1.51371 * 17 16 14 29 29 C 1.53713 * 110.09237 * 155.88630 * 10 9 7 30 30 H 1.08998 * 112.96336 * 264.55638 * 29 10 9 31 31 H 0.96998 * 120.00010 * 359.97438 * 1 2 3 32 32 H 0.97000 * 119.99452 * 359.97438 * 9 7 2 33 33 H 1.09002 * 110.05272 * 1.40432 * 12 10 9 34 34 H 1.09000 * 110.05229 * 122.83921 * 12 10 9 35 35 H 1.09001 * 110.40479 * 94.31670 * 13 12 10 36 36 H 1.09003 * 110.40456 * 216.74094 * 13 12 10 37 37 H 1.08993 * 109.82565 * 32.48048 * 16 14 13 38 38 H 1.09003 * 109.82264 * 153.35137 * 16 14 13 39 39 H 1.08997 * 109.47253 * 300.00549 * 20 18 17 40 40 H 1.08999 * 109.46841 * 60.00503 * 20 18 17 41 41 H 1.08999 * 110.76720 * 241.71411 * 24 22 21 42 42 H 1.09003 * 110.56291 * 118.83046 * 24 22 21 43 43 H 0.96997 * 126.69096 * 179.76731 * 25 24 22 44 44 H 1.09005 * 110.30355 * 217.16539 * 28 17 16 45 45 H 1.09007 * 110.29542 * 95.02300 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2022 -0.0011 10 6 4.1121 -2.4708 -0.0022 11 1 3.5675 -3.2134 -0.5853 12 6 4.2974 -2.9705 1.4413 13 6 5.8164 -3.0164 1.6982 14 6 6.4462 -3.1629 0.2903 15 1 6.5220 -4.1956 -0.0503 16 6 7.7789 -2.3871 0.2796 17 7 7.4796 -0.9934 -0.0756 18 6 8.3873 -0.0072 -0.2170 19 8 8.0257 1.1118 -0.5136 20 6 9.8515 -0.2949 -0.0066 21 7 10.6252 0.9313 -0.2165 22 6 11.1354 1.3104 -1.4048 23 8 11.0439 0.7237 -2.4618 24 6 11.8465 2.6238 -1.1452 25 7 11.6413 2.8496 0.2959 26 6 10.9175 1.8101 0.7490 27 8 10.5694 1.6827 1.9065 28 6 6.0237 -0.8512 -0.2515 29 6 5.5170 -2.2689 -0.5924 30 1 5.5707 -2.5089 -1.6543 31 1 -0.4850 0.8400 0.0004 32 1 3.8646 -0.3621 -0.0014 33 1 3.8209 -2.2820 2.1392 34 1 3.8698 -3.9673 1.5495 35 1 6.1503 -2.0919 2.1693 36 1 6.0709 -3.8744 2.3204 37 1 8.2375 -2.4264 1.2676 38 1 8.4534 -2.8213 -0.4585 39 1 10.0088 -0.6538 1.0105 40 1 10.1776 -1.0564 -0.7150 41 1 11.3970 3.4282 -1.7274 42 1 12.9090 2.5352 -1.3720 43 1 11.9648 3.6014 0.8165 44 1 5.8069 -0.1651 -1.0703 45 1 5.5641 -0.4971 0.6714 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026415321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:39:03 Heat of formation + Delta-G solvation = -39.943910 kcal Electronic energy + Delta-G solvation = -30031.267755 eV Core-core repulsion = 25857.656012 eV Total energy + Delta-G solvation = -4173.611743 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 336.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.70506 -40.60191 -38.90944 -38.64385 -36.42708 -35.34923 -34.96526 -33.37760 -31.25546 -30.24457 -28.81558 -28.56835 -27.75873 -25.69328 -23.70546 -23.26324 -22.83709 -21.37249 -19.84066 -19.51127 -19.00787 -18.37751 -18.08185 -17.61525 -17.14517 -16.86195 -16.17304 -15.87306 -15.64453 -15.27284 -15.15002 -14.72588 -14.51189 -14.38882 -14.18418 -13.73197 -13.62239 -13.24368 -13.15236 -12.74391 -12.63738 -12.40693 -12.27008 -12.07716 -11.54045 -11.37132 -10.92098 -10.82115 -10.69513 -10.65252 -10.59571 -10.46424 -10.41844 -10.33231 -9.95721 -9.90389 -9.66683 -9.55763 -8.92676 -8.67713 -7.27441 -5.77237 -3.13196 1.27948 1.67907 2.44262 2.55523 2.74896 3.00099 3.40794 3.45127 3.49714 3.59475 4.18356 4.31494 4.38101 4.55039 4.59968 4.61625 4.68432 4.76867 4.82531 5.00275 5.19385 5.23776 5.30859 5.32579 5.37661 5.51097 5.56503 5.73644 5.74332 5.82323 5.91019 6.03946 6.18151 6.25187 6.29027 6.34947 6.41603 6.51576 6.62452 6.71622 6.96826 6.98348 7.39769 7.73783 7.97682 8.00335 8.41959 9.19773 9.92796 10.10883 11.40927 Molecular weight = 336.16amu Principal moments of inertia in cm(-1) A = 0.013974 B = 0.003358 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.232167 B = 8335.481573 C = 9415.154577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.008 3.992 3 Si 0.876 3.124 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.092 0.908 9 N -0.749 5.749 10 C 0.188 3.812 11 H 0.064 0.936 12 C -0.145 4.145 13 C -0.118 4.118 14 C -0.100 4.100 15 H 0.108 0.892 16 C 0.101 3.899 17 N -0.610 5.610 18 C 0.513 3.487 19 O -0.530 6.530 20 C 0.106 3.894 21 N -0.562 5.562 22 C 0.526 3.474 23 O -0.465 6.465 24 C 0.066 3.934 25 N -0.728 5.728 26 C 0.707 3.293 27 O -0.538 6.538 28 C 0.112 3.888 29 C -0.108 4.108 30 H 0.093 0.907 31 H 0.260 0.740 32 H 0.362 0.638 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.442 0.558 44 H 0.077 0.923 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.856 -2.377 -0.309 28.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.188 4.188 3 Si 0.707 3.293 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.393 5.393 10 C 0.078 3.922 11 H 0.082 0.918 12 C -0.186 4.186 13 C -0.156 4.156 14 C -0.119 4.119 15 H 0.126 0.874 16 C -0.022 4.022 17 N -0.345 5.345 18 C 0.300 3.700 19 O -0.406 6.406 20 C -0.019 4.019 21 N -0.308 5.308 22 C 0.313 3.687 23 O -0.335 6.335 24 C -0.062 4.062 25 N -0.393 5.393 26 C 0.408 3.592 27 O -0.411 6.411 28 C -0.009 4.009 29 C -0.128 4.128 30 H 0.111 0.889 31 H 0.070 0.930 32 H 0.197 0.803 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.287 0.713 44 H 0.096 0.904 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 28.159 -2.226 -0.445 28.251 hybrid contribution 0.570 1.609 0.261 1.727 sum 28.729 -0.616 -0.184 28.737 Atomic orbital electron populations 1.69691 1.05063 1.25840 1.57425 1.24640 0.95174 0.97067 1.01910 0.86689 0.79320 0.85276 0.78055 1.20931 1.21579 1.20316 1.19073 0.80563 0.94690 1.43155 0.89053 1.43053 1.04142 1.01958 1.90196 1.20644 0.88925 0.89445 0.93163 0.91835 1.22937 0.94056 1.01252 1.00337 1.22470 0.96886 1.01209 0.95015 1.23172 0.92669 0.98920 0.97170 0.87423 1.22121 0.98478 0.81303 1.00329 1.48444 1.07895 1.09513 1.68626 1.20293 0.87403 0.84470 0.77881 1.90752 1.80791 1.21549 1.47552 1.21427 0.88788 0.85288 1.06392 1.45827 1.50226 1.23487 1.11280 1.20906 0.77994 0.86805 0.82989 1.90839 1.57357 1.59404 1.25854 1.22448 1.03499 0.96750 0.83460 1.45341 1.58384 1.25636 1.09915 1.15760 0.78765 0.80302 0.84404 1.91039 1.57323 1.76876 1.15825 1.22251 0.77958 0.98219 1.02502 1.23263 0.96406 0.93273 0.99808 0.88853 0.93031 0.80286 0.90669 0.92462 0.91831 0.91976 0.90993 0.91362 0.85545 0.85682 0.85644 0.85726 0.71307 0.90419 0.90163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.50 13.97 55.49 0.78 -28.72 16 2 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 23.01 27.73 -169.99 -4.71 18.29 16 4 H -0.28 -7.43 7.11 56.52 0.40 -7.03 16 5 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 6 H -0.28 -7.03 6.52 56.52 0.37 -6.66 16 7 C -0.25 -6.84 10.44 -15.06 -0.16 -7.00 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 N -0.75 -17.41 4.60 -52.63 -0.24 -17.65 16 10 C 0.19 3.39 3.22 -67.11 -0.22 3.18 16 11 H 0.06 1.17 8.09 -51.93 -0.42 0.75 16 12 C -0.15 -2.33 6.56 -25.69 -0.17 -2.50 16 13 C -0.12 -1.46 5.59 -25.13 -0.14 -1.60 16 14 C -0.10 -1.09 4.24 -87.22 -0.37 -1.46 16 15 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 16 C 0.10 0.98 5.71 -3.19 -0.02 0.96 16 17 N -0.61 -8.49 3.32 -171.10 -0.57 -9.06 16 18 C 0.51 7.71 7.92 -10.99 -0.09 7.63 16 19 O -0.53 -10.34 16.68 5.56 0.09 -10.25 16 20 C 0.11 1.12 5.37 -5.20 -0.03 1.09 16 21 N -0.56 -6.18 2.09 -122.02 -0.26 -6.44 16 22 C 0.53 5.17 8.32 -10.55 -0.09 5.08 16 23 O -0.47 -5.84 17.76 5.59 0.10 -5.74 16 24 C 0.07 0.33 7.97 -4.32 -0.03 0.30 16 25 N -0.73 -4.88 6.58 -65.73 -0.43 -5.32 16 26 C 0.71 8.07 8.62 -88.02 -0.76 7.31 16 27 O -0.54 -8.13 17.48 5.33 0.09 -8.04 16 28 C 0.11 1.89 4.41 -2.87 -0.01 1.88 16 29 C -0.11 -1.57 4.03 -87.79 -0.35 -1.93 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 32 H 0.36 8.53 3.22 -40.82 -0.13 8.40 16 33 H 0.07 1.42 7.91 -51.93 -0.41 1.01 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.86 7.28 -51.93 -0.38 0.48 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.59 7.83 -51.93 -0.41 0.18 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.13 1.11 7.86 -51.93 -0.41 0.70 16 40 H 0.13 0.98 8.00 -51.93 -0.42 0.57 16 41 H 0.13 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.13 0.21 8.14 -51.93 -0.42 -0.22 16 43 H 0.44 1.81 8.96 -40.82 -0.37 1.45 16 44 H 0.08 1.47 8.02 -51.93 -0.42 1.05 16 45 H 0.08 1.53 6.32 -51.93 -0.33 1.20 16 LS Contribution 365.71 15.07 5.51 5.51 Total: -1.00 -39.37 365.71 -8.40 -47.77 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -6.23 Total: 6.55 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: -2.53 Total: 13.09 kcal Atomic # 7 Polarization: -66.46 SS G_CDS: -0.72 Total: -67.19 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: 0.29 Total: -24.03 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.71 Total: 18.29 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -39.37 -8.40 -47.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026415321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.829 kcal (2) G-P(sol) polarization free energy of solvation -39.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds